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The map label for this gene is ycjR [C]

Identifier: 146301781

GI number: 146301781

Start: 4825893

End: 4826744

Strand: Direct

Name: ycjR [C]

Synonym: Fjoh_4045

Alternate gene names: 146301781

Gene position: 4825893-4826744 (Clockwise)

Preceding gene: 146301780

Following gene: 146301782

Centisome position: 79.15

GC content: 35.56

Gene sequence:

>852_bases
ATGAAAATAAAAATAGGCGCTTCACTCCTATCCTGGACAACTCCAAACTGGACTCCGGAATCAGGACATTATGCCATAAA
GGAAACTGCAAAAAATGGCTTTGATCTGATTGAAATTCTTCTGCCTTCTAATATGGAATTTGATGCGACAACGGTAAAAA
AACAACTTCAGGAAAATAATCTTGATGCTGTATGCTCGTTAAATCTTCCTAAAGAAGCGCATATTCCATTTTATCCTAAG
GAAGCTTTGACACTTATCTTCAAAGCTTTGGATAAAACTGCTCAATTAGAAACCACTTTTTTAGGAGGCGTTCTGCACAG
CGGAATTGGTGTTTTTACCGGAAATCCTGTTACAAATCAGGAAAAGGAAATTATTATAAATGTTTTGGGTGAAGCCGCTC
TTTATGCTGCTAAACTTGGCATTACGATTGGAATTGAACCAATAAACCGTTATGAAAGCTATGTGTGCAATACAGCATCA
AATGTATTGGAAATTATCAATAGAATTAATGCTGATAATCTTGCTGTTCATTTGGACACTTTTCATATGAATGTAGAAGA
AAACAACTTTTATGATCCTATAATTAAAGCGGGGAAAAAACTAAAACATTTTCATATTACCGAAAGTAACCGCGGCATGC
CCGGCGAAGGAACCGTAAATTGGGATGAACTTTTTAAAGCTTTAAAAGCCATAAACTTTGAAGGAAATCTGGTATTAGAA
AACTTTTCTTCATCAATTCCCGGAATGCAGCAAGCGGTTTCTTTATGGCAGACTTCACCACATAATGCCGAAGAACTAGC
CGTAGGCAGTTTAAATTTTATCAAACAAAAAGTTTTTGAATATCAAACATAA

Upstream 100 bases:

>100_bases
ATTACAAACCACATACACTTGGACAGCCTTATGTACTTTCTAAAAGAGACATTGTGCGTTAAACTTTCAAAATAAAACAT
TCTTCTTCAAAAAATACACA

Downstream 100 bases:

>100_bases
GCTATTTTCTACATCGCAAAGCGGCACGTAATTTTTATCTACATCAAAAAAGGGATTTCATGACATGAAATCCCTTTTTC
GTGACATATTTTTCCTCCTT

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKIKIGASLLSWTTPNWTPESGHYAIKETAKNGFDLIEILLPSNMEFDATTVKKQLQENNLDAVCSLNLPKEAHIPFYPK
EALTLIFKALDKTAQLETTFLGGVLHSGIGVFTGNPVTNQEKEIIINVLGEAALYAAKLGITIGIEPINRYESYVCNTAS
NVLEIINRINADNLAVHLDTFHMNVEENNFYDPIIKAGKKLKHFHITESNRGMPGEGTVNWDELFKALKAINFEGNLVLE
NFSSSIPGMQQAVSLWQTSPHNAEELAVGSLNFIKQKVFEYQT

Sequences:

>Translated_283_residues
MKIKIGASLLSWTTPNWTPESGHYAIKETAKNGFDLIEILLPSNMEFDATTVKKQLQENNLDAVCSLNLPKEAHIPFYPK
EALTLIFKALDKTAQLETTFLGGVLHSGIGVFTGNPVTNQEKEIIINVLGEAALYAAKLGITIGIEPINRYESYVCNTAS
NVLEIINRINADNLAVHLDTFHMNVEENNFYDPIIKAGKKLKHFHITESNRGMPGEGTVNWDELFKALKAINFEGNLVLE
NFSSSIPGMQQAVSLWQTSPHNAEELAVGSLNFIKQKVFEYQT
>Mature_283_residues
MKIKIGASLLSWTTPNWTPESGHYAIKETAKNGFDLIEILLPSNMEFDATTVKKQLQENNLDAVCSLNLPKEAHIPFYPK
EALTLIFKALDKTAQLETTFLGGVLHSGIGVFTGNPVTNQEKEIIINVLGEAALYAAKLGITIGIEPINRYESYVCNTAS
NVLEIINRINADNLAVHLDTFHMNVEENNFYDPIIKAGKKLKHFHITESNRGMPGEGTVNWDELFKALKAINFEGNLVLE
NFSSSIPGMQQAVSLWQTSPHNAEELAVGSLNFIKQKVFEYQT

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=224, Percent_Identity=27.2321428571429, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 31450; Mature: 31450

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKIGASLLSWTTPNWTPESGHYAIKETAKNGFDLIEILLPSNMEFDATTVKKQLQENN
CEEEECCHHHHCCCCCCCCCCCCEEEHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC
LDAVCSLNLPKEAHIPFYPKEALTLIFKALDKTAQLETTFLGGVLHSGIGVFTGNPVTNQ
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
EKEIIINVLGEAALYAAKLGITIGIEPINRYESYVCNTASNVLEIINRINADNLAVHLDT
HHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
FHMNVEENNFYDPIIKAGKKLKHFHITESNRGMPGEGTVNWDELFKALKAINFEGNLVLE
EEEEECCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
NFSSSIPGMQQAVSLWQTSPHNAEELAVGSLNFIKQKVFEYQT
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKIGASLLSWTTPNWTPESGHYAIKETAKNGFDLIEILLPSNMEFDATTVKKQLQENN
CEEEECCHHHHCCCCCCCCCCCCEEEHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC
LDAVCSLNLPKEAHIPFYPKEALTLIFKALDKTAQLETTFLGGVLHSGIGVFTGNPVTNQ
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
EKEIIINVLGEAALYAAKLGITIGIEPINRYESYVCNTASNVLEIINRINADNLAVHLDT
HHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
FHMNVEENNFYDPIIKAGKKLKHFHITESNRGMPGEGTVNWDELFKALKAINFEGNLVLE
EEEEECCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
NFSSSIPGMQQAVSLWQTSPHNAEELAVGSLNFIKQKVFEYQT
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA