Click here to switch to the map view.

The map label for this gene is ydzF [H]

Identifier: 146301772

GI number: 146301772

Start: 4813602

End: 4813946

Strand: Direct

Name: ydzF [H]

Synonym: Fjoh_4034

Alternate gene names: 146301772

Gene position: 4813602-4813946 (Clockwise)

Preceding gene: 146301765

Following gene: 146301773

Centisome position: 78.95

GC content: 33.62

Gene sequence:

>345_bases
ATGGAACGAAATCAAAAAGAAGAATTTCAGGCGCTTCAGGATACTTTATATGTTTTGGGCGGTAAATGGAAACTGCCTAT
CATTAATTCTATTTGTAACGGAAATAGTCGTTTTAAGGAAATAAAAGACAGCATTCCGGGCATTACGGCTCGAATGTTAT
CGAAGGAATTAAAAGATATGGAGCTTAATAATCTGGTAAAAAGAACAGAAGACCGAGATGCCAAAGTACCCATTCTTTAT
GAGTCAACATCATATTGTCAATCTTTTGGACCTATCATTTCTGAAATGATTAAATGGGGAATTTCACATCGAAATCATAT
TAAAAAACAGCAGGAAAAAATTTAA

Upstream 100 bases:

>100_bases
AAGCGAAGTTTTTTAATACTGCATTTCAAATGATTCTATAAGATTTATGGGCAGTCAAAAAAATTAAAATTTCTTATATA
ACTTTTAGGGTTTAGAAAAT

Downstream 100 bases:

>100_bases
AATATAGTGTATGAATTTTAGAAACGCCGTTATTGCTGACTTAGCAGTAATAAACGAAATAGAAAATGCTTGTTTTCCGC
CAAACGAGGCAGCAGGTTTA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MERNQKEEFQALQDTLYVLGGKWKLPIINSICNGNSRFKEIKDSIPGITARMLSKELKDMELNNLVKRTEDRDAKVPILY
ESTSYCQSFGPIISEMIKWGISHRNHIKKQQEKI

Sequences:

>Translated_114_residues
MERNQKEEFQALQDTLYVLGGKWKLPIINSICNGNSRFKEIKDSIPGITARMLSKELKDMELNNLVKRTEDRDAKVPILY
ESTSYCQSFGPIISEMIKWGISHRNHIKKQQEKI
>Mature_114_residues
MERNQKEEFQALQDTLYVLGGKWKLPIINSICNGNSRFKEIKDSIPGITARMLSKELKDMELNNLVKRTEDRDAKVPILY
ESTSYCQSFGPIISEMIKWGISHRNHIKKQQEKI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13284; Mature: 13284

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERNQKEEFQALQDTLYVLGGKWKLPIINSICNGNSRFKEIKDSIPGITARMLSKELKDM
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
ELNNLVKRTEDRDAKVPILYESTSYCQSFGPIISEMIKWGISHRNHIKKQQEKI
HHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MERNQKEEFQALQDTLYVLGGKWKLPIINSICNGNSRFKEIKDSIPGITARMLSKELKDM
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH
ELNNLVKRTEDRDAKVPILYESTSYCQSFGPIISEMIKWGISHRNHIKKQQEKI
HHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]