BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is ykvO [H]

Identifier: 146301745

GI number: 146301745

Start: 4789492

End: 4790235

Strand: Reverse

Name: ykvO [H]

Synonym: Fjoh_4007

Alternate gene names: 146301745

Gene position: 4790235-4789492 (Counterclockwise)

Preceding gene: 146301762

Following gene: 146301744

Centisome position: 78.57

GC content: 37.37

Gene sequence:

>744_bases
ATGGACAATTTAAAAGATAAAACAGCCGTAATAACAGGTGGAAACAGCGGTATAGGATATTCTACAGCAAAACTGTTAAA
AGAAGAGGGAGCGCAAGTTATTATTACCGGAAGAAGAAAAGAAGCAATCGAAAAAGCAGCACTGGAATTAGGCGTTACGG
CAATAACAGCAGATCAATCGAGTATTTCTGATATTGAAAGTCTGGCTTTAAAAGTTAAACAGGATTTTGGTAAAGTAGAT
ATTCTTTTCATCAATGCTGGAATTGCCGGATTAGGTAATATCGAACAAGCATCAGAAGAACAATTCGATAGTATTATGAA
TGTGAATTTTAAAGGTGCTTATTTCACATTAAGCCGATTTATTCCGATTTTAAATGATGGTGCTTCGGTTGTTTTTCTTT
CTTCAAATACTGCCAGTATGCCAGGACCGGAATCTTCGGTTTATTCTGCAAGTAAGACTGCTTTGAATTCAGTTATGAAA
TCAGCTGCTTTAGAATTAGCGCCTAGAAAAATCAGAGTGAATTCTGTTAGTCCGGGACCAACTCAAACGGAGGTTATGAA
GAAAGTAGGTTTAGACGAAGCCACTGTAAATGGTATTATGGATATGGTGGTAGAAAAAGTGCCGTTAAAACAAATGGGTA
AAGCCGAAGACGTTGCCAAAATGGTTTCTTATGTAAGCAGTGATGCAGCAAAATTCATTACCGGAGCAGATTTTATTATG
GACGGCGGAATGGTGTTAGCTTAA

Upstream 100 bases:

>100_bases
TAAATGTTAAAATCGACTTTCCAGTATACTCAATGATACCGTTAAAAAAGCAATAGCTTTTGCAATTTAACTTTGTCCCG
TTAATTTAAAACATATAAAA

Downstream 100 bases:

>100_bases
TGGTGAATTGTGAATTATTAATTGTGAATTATTAATTGTGAATTGAGATTTAACCGCAAAGCGCGCTAAGGTTTACGCAA
AGGTCGCAAAGTTATTACAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDNLKDKTAVITGGNSGIGYSTAKLLKEEGAQVIITGRRKEAIEKAALELGVTAITADQSSISDIESLALKVKQDFGKVD
ILFINAGIAGLGNIEQASEEQFDSIMNVNFKGAYFTLSRFIPILNDGASVVFLSSNTASMPGPESSVYSASKTALNSVMK
SAALELAPRKIRVNSVSPGPTQTEVMKKVGLDEATVNGIMDMVVEKVPLKQMGKAEDVAKMVSYVSSDAAKFITGADFIM
DGGMVLA

Sequences:

>Translated_247_residues
MDNLKDKTAVITGGNSGIGYSTAKLLKEEGAQVIITGRRKEAIEKAALELGVTAITADQSSISDIESLALKVKQDFGKVD
ILFINAGIAGLGNIEQASEEQFDSIMNVNFKGAYFTLSRFIPILNDGASVVFLSSNTASMPGPESSVYSASKTALNSVMK
SAALELAPRKIRVNSVSPGPTQTEVMKKVGLDEATVNGIMDMVVEKVPLKQMGKAEDVAKMVSYVSSDAAKFITGADFIM
DGGMVLA
>Mature_247_residues
MDNLKDKTAVITGGNSGIGYSTAKLLKEEGAQVIITGRRKEAIEKAALELGVTAITADQSSISDIESLALKVKQDFGKVD
ILFINAGIAGLGNIEQASEEQFDSIMNVNFKGAYFTLSRFIPILNDGASVVFLSSNTASMPGPESSVYSASKTALNSVMK
SAALELAPRKIRVNSVSPGPTQTEVMKKVGLDEATVNGIMDMVVEKVPLKQMGKAEDVAKMVSYVSSDAAKFITGADFIM
DGGMVLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=33.739837398374, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=36.7875647668394, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=29.8039215686275, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=28.957528957529, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.2404371584699, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=28.9795918367347, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=27.6, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=27.2030651340996, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI66933014, Length=226, Percent_Identity=26.9911504424779, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=30.5699481865285, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=221, Percent_Identity=26.2443438914027, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=28.5171102661597, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI146231950, Length=121, Percent_Identity=34.7107438016529, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=29.7560975609756, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7657478, Length=215, Percent_Identity=31.6279069767442, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4503817, Length=186, Percent_Identity=24.7311827956989, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI109715829, Length=256, Percent_Identity=27.734375, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=28.90625, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=31.0483870967742, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=30.7392996108949, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=29.6, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=29.718875502008, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.8537549407115, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=28.740157480315, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.968253968254, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=29.3172690763052, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787905, Length=261, Percent_Identity=29.1187739463602, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.2373540856031, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=30, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787820, Length=175, Percent_Identity=26.2857142857143, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=30.1020408163265, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1788891, Length=230, Percent_Identity=28.695652173913, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=32.1428571428571, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=33.0612244897959, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=32.1969696969697, Blast_Score=113, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=244, Percent_Identity=30.327868852459, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=29.6992481203008, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.2, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.0380228136882, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=31.203007518797, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.9433962264151, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=29.3172690763052, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=30.7984790874525, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.0751879699248, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=30.9701492537313, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=29.3233082706767, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=30.5343511450382, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=29.9625468164794, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=30.6772908366534, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=28.996282527881, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=29.6153846153846, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.8973384030418, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=26.5917602996255, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.1368821292776, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.1023622047244, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=30.078125, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=226, Percent_Identity=28.3185840707965, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=244, Percent_Identity=29.0983606557377, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=26.8774703557312, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.5193798449612, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322067, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=241, Percent_Identity=28.2157676348548, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=33.4677419354839, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=34, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=32.8, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.4516129032258, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=33.1967213114754, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=27.710843373494, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=29.4354838709677, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=27.7551020408163, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281364892, Length=205, Percent_Identity=28.2926829268293, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571387, Length=204, Percent_Identity=26.9607843137255, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641388, Length=248, Percent_Identity=27.8225806451613, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648944, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26052; Mature: 26052

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLKDKTAVITGGNSGIGYSTAKLLKEEGAQVIITGRRKEAIEKAALELGVTAITADQS
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCEEEECCCH
SISDIESLALKVKQDFGKVDILFINAGIAGLGNIEQASEEQFDSIMNVNFKGAYFTLSRF
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IPILNDGASVVFLSSNTASMPGPESSVYSASKTALNSVMKSAALELAPRKIRVNSVSPGP
HHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
TQTEVMKKVGLDEATVNGIMDMVVEKVPLKQMGKAEDVAKMVSYVSSDAAKFITGADFIM
CHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHC
DGGMVLA
CCCEEEC
>Mature Secondary Structure
MDNLKDKTAVITGGNSGIGYSTAKLLKEEGAQVIITGRRKEAIEKAALELGVTAITADQS
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCEEEECCCH
SISDIESLALKVKQDFGKVDILFINAGIAGLGNIEQASEEQFDSIMNVNFKGAYFTLSRF
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IPILNDGASVVFLSSNTASMPGPESSVYSASKTALNSVMKSAALELAPRKIRVNSVSPGP
HHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
TQTEVMKKVGLDEATVNGIMDMVVEKVPLKQMGKAEDVAKMVSYVSSDAAKFITGADFIM
CHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHC
DGGMVLA
CCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]