| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is cmtB [H]
Identifier: 146301732
GI number: 146301732
Start: 4778106
End: 4778840
Strand: Reverse
Name: cmtB [H]
Synonym: Fjoh_3994
Alternate gene names: 146301732
Gene position: 4778840-4778106 (Counterclockwise)
Preceding gene: 146301733
Following gene: 146301731
Centisome position: 78.38
GC content: 37.82
Gene sequence:
>735_bases ATGAAAAAACAAACTATAATCGTTACCGGAGCTGCTTCGGGAATTGGAAAAGGAATCGCTAAATATTTTTTAGACAGAGG CGATAATGTAGTAATCAATTCGTTAACAGAAAGTGCATTAGAAAAAACGTTCAATGAATTTGGTGCAGGCGATAATCTGG CAAAATTTGCCGGAGATGTAAGCGATAAAAAAACAGGAGAACAACTGGTTAAAATTGCTTTAGAAAAATTTGGTTCTGTA GATGTATTAATCAATAATGCCGGAATTTTTGCCAGTAAACCATTTTTAGAAGTAGACGAAGCGTATTTAGATACCTTTCT AAAAACCAATTTAAAAGGAACTTATTTCACAACTCAATCTGTTATTCCGCAAATGCTTAAACAGCAGGGAGGCGTAGTAA TTAATATCGGAACGCCATTGGTAAATCATGGTTTAGGCGGATGGCCCGCTTCGGCACCTATTTCAAGTAAAGGAGCAATT CATGCCTTGACGATTCAGTTAGCGGCCGAATTTGGAAAACAAAATATTCGTGTCAATACCGTTGCTCCGGGTGTAATTCG TACGCCAATGCATGGTGACAATGCTGATCAGAGTGCCGGACTGCATTTATTAAACAGAGTAGGAGAGACCGATGATGTTT CTGAAATTGTTTACACTGTTGCCAAAAGTAATTTTATTACCGGAGCCATTATTAATGTTGACGGCGGAAAAGGTGCAGGA CACAATTTAAATTAA
Upstream 100 bases:
>100_bases GTTGTGATTCAGGAAATAGAACTGGACGATTGGGGGTATGCAGGAGAACAAGTATCAGTATTAAGAGAAAAAGGCATAAC AGCCGATAAAAAATAACATC
Downstream 100 bases:
>100_bases ATGAAAACGATTTTATTAACTGCTTTTATGCTCTGGAATTTTCAGGGCATAAAAGCTCAAAATACAATTAAAATGGAAAA TCAAATAGAAATTCAGGCTA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: Biphenyl-2,3-dihydro-2,3-diol dehydrogenase [H]
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKKQTIIVTGAASGIGKGIAKYFLDRGDNVVINSLTESALEKTFNEFGAGDNLAKFAGDVSDKKTGEQLVKIALEKFGSV DVLINNAGIFASKPFLEVDEAYLDTFLKTNLKGTYFTTQSVIPQMLKQQGGVVINIGTPLVNHGLGGWPASAPISSKGAI HALTIQLAAEFGKQNIRVNTVAPGVIRTPMHGDNADQSAGLHLLNRVGETDDVSEIVYTVAKSNFITGAIINVDGGKGAG HNLN
Sequences:
>Translated_244_residues MKKQTIIVTGAASGIGKGIAKYFLDRGDNVVINSLTESALEKTFNEFGAGDNLAKFAGDVSDKKTGEQLVKIALEKFGSV DVLINNAGIFASKPFLEVDEAYLDTFLKTNLKGTYFTTQSVIPQMLKQQGGVVINIGTPLVNHGLGGWPASAPISSKGAI HALTIQLAAEFGKQNIRVNTVAPGVIRTPMHGDNADQSAGLHLLNRVGETDDVSEIVYTVAKSNFITGAIINVDGGKGAG HNLN >Mature_244_residues MKKQTIIVTGAASGIGKGIAKYFLDRGDNVVINSLTESALEKTFNEFGAGDNLAKFAGDVSDKKTGEQLVKIALEKFGSV DVLINNAGIFASKPFLEVDEAYLDTFLKTNLKGTYFTTQSVIPQMLKQQGGVVINIGTPLVNHGLGGWPASAPISSKGAI HALTIQLAAEFGKQNIRVNTVAPGVIRTPMHGDNADQSAGLHLLNRVGETDDVSEIVYTVAKSNFITGAIINVDGGKGAG HNLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=31.7647058823529, Blast_Score=107, Evalue=8e-24, Organism=Homo sapiens, GI40254992, Length=231, Percent_Identity=30.7359307359307, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=30.5555555555556, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=29.9595141700405, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.0395256916996, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4758504, Length=246, Percent_Identity=29.2682926829268, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=31.9796954314721, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI40254986, Length=224, Percent_Identity=27.2321428571429, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=32.2033898305085, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI126723750, Length=245, Percent_Identity=27.7551020408163, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=29.2929292929293, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI66933014, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=28.7292817679558, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=30.9236947791165, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787335, Length=236, Percent_Identity=30.5084745762712, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=31.5789473684211, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.5220883534137, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=28.8, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.0487804878049, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787820, Length=227, Percent_Identity=27.3127753303965, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=29.4820717131474, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=29.4605809128631, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=27.027027027027, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=31.8897637795276, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=29.4117647058824, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.9317269076305, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.1954887218045, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25147288, Length=237, Percent_Identity=28.2700421940928, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=26.5384615384615, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17555706, Length=239, Percent_Identity=28.4518828451883, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17568967, Length=186, Percent_Identity=32.7956989247312, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=31.0483870967742, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=28, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=31.1023622047244, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=28.4046692607004, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=26.1538461538462, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=29.7619047619048, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=26.8482490272374, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17551412, Length=208, Percent_Identity=29.3269230769231, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17564282, Length=239, Percent_Identity=25.9414225941423, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=26.171875, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=27.979274611399, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=24.21875, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=31.3432835820896, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=31.3432835820896, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=28.2352941176471, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=25.7731958762887, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=28.4210526315789, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=28.2945736434109, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17555612, Length=213, Percent_Identity=29.5774647887324, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17557668, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558628, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17562908, Length=194, Percent_Identity=26.8041237113402, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=28.8659793814433, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=259, Percent_Identity=26.2548262548263, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=25.6281407035176, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=34.1085271317829, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=6e-22, Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=32.0987654320988, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=30.5785123966942, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=31.496062992126, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=28.2868525896414, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=27.6, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581726, Length=193, Percent_Identity=28.4974093264249, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=26.4822134387352, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=29.3172690763052, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI18859837, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.0816326530612, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641232, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584748, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=199, Percent_Identity=29.6482412060301, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.3.1.58 [H]
Molecular weight: Translated: 25697; Mature: 25697
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQTIIVTGAASGIGKGIAKYFLDRGDNVVINSLTESALEKTFNEFGAGDNLAKFAGDV CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHCCC SDKKTGEQLVKIALEKFGSVDVLINNAGIFASKPFLEVDEAYLDTFLKTNLKGTYFTTQS CCHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEHHH VIPQMLKQQGGVVINIGTPLVNHGLGGWPASAPISSKGAIHALTIQLAAEFGKQNIRVNT HHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEEE VAPGVIRTPMHGDNADQSAGLHLLNRVGETDDVSEIVYTVAKSNFITGAIINVDGGKGAG ECCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC HNLN CCCC >Mature Secondary Structure MKKQTIIVTGAASGIGKGIAKYFLDRGDNVVINSLTESALEKTFNEFGAGDNLAKFAGDV CCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHHHHCCC SDKKTGEQLVKIALEKFGSVDVLINNAGIFASKPFLEVDEAYLDTFLKTNLKGTYFTTQS CCHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEHHH VIPQMLKQQGGVVINIGTPLVNHGLGGWPASAPISSKGAIHALTIQLAAEFGKQNIRVNT HHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEEEE VAPGVIRTPMHGDNADQSAGLHLLNRVGETDDVSEIVYTVAKSNFITGAIINVDGGKGAG ECCCEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCC HNLN CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8631713 [H]