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The map label for this gene is yphC [C]

Identifier: 146301726

GI number: 146301726

Start: 4771596

End: 4772594

Strand: Reverse

Name: yphC [C]

Synonym: Fjoh_3988

Alternate gene names: 146301726

Gene position: 4772594-4771596 (Counterclockwise)

Preceding gene: 146301728

Following gene: 146301725

Centisome position: 78.28

GC content: 33.63

Gene sequence:

>999_bases
ATGAAAGCAGTTATATTACAGGAAAACCGAGAATTTAAGCTCGAAACAGTGGCAATTCCACAGCCAGAACGTAATCAGAT
TCAGGTAAAGATTACAGCTTCAGGATTTAACCCAATTGATTATCAAATGACTGAAAATAAATCTGAAAGAAAACTGATTC
ATTCACCAATTCTGGGACGTGAATTTTCAGGAATAATTACAGCAATTGGTACAGAAATAACAGAATTTAAAATTGGAGAT
GCCGTTTTCTGCGGTTCAGGCAGTATGGGATCTAATGGAACTTATGCCGAATATATTTGTGTTCCAGAGGAAATCGCAGT
TAAAAAACCTCAAAATATTTCTTTTGAAGAAGCAGCAGGAATTCCATCGGCAGGACTTACGGCATTACAATCATTTAAAA
GAATGAATGCTTCTGCAGCTGATTCGATATTTATTACGGGTGCTGCCGGCGGAGTGGGAAATATGTTTATAAAACTTCTT
ACAGCTAATAGTTTTAAAAAATTTTGGGTAACAGCCGGAAATGATGAAAGTATCGCTTCTTTGATAAACCTTGGAGTAAA
ACGAGAGCAAATCATCAATTATAAAAAAGAAAATGTATACGAAACTGCTCTTTCTTTAAACGAAAATAAAAAGTTTGATA
TCGTTGTGGATTTGGTTGGAAATAGTATTGCTGATATCGCTGCAAGACTTTTAAAAATAAACGGAACTTATATTGACGTC
ACAAATTTTTTAACGGCTGAATCCCGCAGTATTCTTTTTTCTAAAGGCGTTGCAATTTACAATATTTCTAATTATGCATA
CGGAATTGAGAAGCAGTATGAATATTACAAAAATGGTTTAAGTGAGTTGAGTTATTTAATAGAAAATGAAATAATTAGTC
CACCCAGTATTTCTGTAATTGGTGAGCTAAATGCGGAAACTGTCAATAAAGCGCTGGCTATTTTGCGTGAGAACAAAACG
TATGGAAGAAAATTAATAATGAAGATTAATAAAGAATGA

Upstream 100 bases:

>100_bases
TTTGCCATACTAGTTTCTCTTTGGTAACCGGTTACCTTGGGTTAACCCATAACAAAAATAAAGTATTACGGCGATACTTT
TGTAAACTAAAACGATAAAA

Downstream 100 bases:

>100_bases
AAACAATACCAAGAAGAATCGTTACGGGCATACGAAACGGAAAATCAATTATCGAACAAAATGAAATCGTGAGCAATGTA
TCAGAGCATTTTCCGGGATT

Product: alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKAVILQENREFKLETVAIPQPERNQIQVKITASGFNPIDYQMTENKSERKLIHSPILGREFSGIITAIGTEITEFKIGD
AVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEAAGIPSAGLTALQSFKRMNASAADSIFITGAAGGVGNMFIKLL
TANSFKKFWVTAGNDESIASLINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNSIADIAARLLKINGTYIDV
TNFLTAESRSILFSKGVAIYNISNYAYGIEKQYEYYKNGLSELSYLIENEIISPPSISVIGELNAETVNKALAILRENKT
YGRKLIMKINKE

Sequences:

>Translated_332_residues
MKAVILQENREFKLETVAIPQPERNQIQVKITASGFNPIDYQMTENKSERKLIHSPILGREFSGIITAIGTEITEFKIGD
AVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEAAGIPSAGLTALQSFKRMNASAADSIFITGAAGGVGNMFIKLL
TANSFKKFWVTAGNDESIASLINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNSIADIAARLLKINGTYIDV
TNFLTAESRSILFSKGVAIYNISNYAYGIEKQYEYYKNGLSELSYLIENEIISPPSISVIGELNAETVNKALAILRENKT
YGRKLIMKINKE
>Mature_332_residues
MKAVILQENREFKLETVAIPQPERNQIQVKITASGFNPIDYQMTENKSERKLIHSPILGREFSGIITAIGTEITEFKIGD
AVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEAAGIPSAGLTALQSFKRMNASAADSIFITGAAGGVGNMFIKLL
TANSFKKFWVTAGNDESIASLINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNSIADIAARLLKINGTYIDV
TNFLTAESRSILFSKGVAIYNISNYAYGIEKQYEYYKNGLSELSYLIENEIISPPSISVIGELNAETVNKALAILRENKT
YGRKLIMKINKE

Specific function: Unknown

COG id: COG0604

COG function: function code CR; NADPH:quinone reductase and related Zn-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily [H]

Homologues:

Organism=Homo sapiens, GI22538446, Length=241, Percent_Identity=28.6307053941909, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI22538444, Length=241, Percent_Identity=28.6307053941909, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI47519420, Length=302, Percent_Identity=27.1523178807947, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI194239674, Length=206, Percent_Identity=27.1844660194175, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI13236495, Length=206, Percent_Identity=27.1844660194175, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI24308257, Length=262, Percent_Identity=26.3358778625954, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI194239676, Length=183, Percent_Identity=28.4153005464481, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI87082125, Length=329, Percent_Identity=24.3161094224924, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790485, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17507255, Length=278, Percent_Identity=26.6187050359712, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71987554, Length=347, Percent_Identity=23.0547550432277, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6319621, Length=198, Percent_Identity=24.7474747474747, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323729, Length=200, Percent_Identity=23.5, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6319520, Length=284, Percent_Identity=28.169014084507, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323961, Length=280, Percent_Identity=22.5, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324486, Length=280, Percent_Identity=20.7142857142857, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR013154
- InterPro:   IPR002085
- InterPro:   IPR014182
- InterPro:   IPR011032
- InterPro:   IPR016040
- InterPro:   IPR002364 [H]

Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]

EC number: NA

Molecular weight: Translated: 36574; Mature: 36574

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVILQENREFKLETVAIPQPERNQIQVKITASGFNPIDYQMTENKSERKLIHSPILGR
CCEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHCCCCCC
EFSGIITAIGTEITEFKIGDAVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEAAG
HHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCEEEEEECCHHHHCCCCCCCCHHHHCC
IPSAGLTALQSFKRMNASAADSIFITGAAGGVGNMFIKLLTANSFKKFWVTAGNDESIAS
CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHEEEEECCCCEEEEEECCCCHHHHH
LINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNSIADIAARLLKINGTYIDV
HHHCCCCHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEE
TNFLTAESRSILFSKGVAIYNISNYAYGIEKQYEYYKNGLSELSYLIENEIISPPSISVI
EHHEECCCCEEEEECCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
GELNAETVNKALAILRENKTYGRKLIMKINKE
ECCCHHHHHHHHHHHHCCCHHCEEEEEEECCC
>Mature Secondary Structure
MKAVILQENREFKLETVAIPQPERNQIQVKITASGFNPIDYQMTENKSERKLIHSPILGR
CCEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHCCCCCC
EFSGIITAIGTEITEFKIGDAVFCGSGSMGSNGTYAEYICVPEEIAVKKPQNISFEEAAG
HHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCEEEEEECCHHHHCCCCCCCCHHHHCC
IPSAGLTALQSFKRMNASAADSIFITGAAGGVGNMFIKLLTANSFKKFWVTAGNDESIAS
CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHEEEEECCCCEEEEEECCCCHHHHH
LINLGVKREQIINYKKENVYETALSLNENKKFDIVVDLVGNSIADIAARLLKINGTYIDV
HHHCCCCHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEE
TNFLTAESRSILFSKGVAIYNISNYAYGIEKQYEYYKNGLSELSYLIENEIISPPSISVI
EHHEECCCCEEEEECCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
GELNAETVNKALAILRENKTYGRKLIMKINKE
ECCCHHHHHHHHHHHHCCCHHCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA