Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 146301674

GI number: 146301674

Start: 4689339

End: 4691612

Strand: Reverse

Name: bphB [H]

Synonym: Fjoh_3936

Alternate gene names: 146301674

Gene position: 4691612-4689339 (Counterclockwise)

Preceding gene: 146301675

Following gene: 146301672

Centisome position: 76.95

GC content: 35.05

Gene sequence:

>2274_bases
ATGAATATTAAAGATATAGTCAATCGCGATCTTGTTACCTTAACCAATTGTGAACACGAACCCATACATATCCCGGGAAG
TATCCAGCCTCACGGTTTTTTGATAGGTCTTGATTCTGATTTGAAAATAGATTTCTGCACAGCAAATATTTCTTTATTTG
TCGATTTACAGCATACCGATATTTTAGGGAAAAATTTTACAGCTATTTTTGGTTCAAAACAGCAAAAACAAATTCTTGAT
TATATCAATGAAGATAAAATTCAGAATGTATTTCCTTTAGAAATTAATTTATTAGGAAAGTCATTTCAGGTCAGCATACA
TAAAAGTTATGATATTTATGTGCTGGAAGCAGAACTCAAATTTGCCGACAGAGAAAAACTGGCCGATGTTTACACACAAA
CGATTCAGTTTGTGACCCAAATGAATAATACAACTTCGCTTAAAGACTTGTGCGCGCTGGTTGCAGAAGGAACACGGGAA
ATTACAGGTTATGACCGTGTAATGATCTATAAGTTTGACGAGCTGTATAATGGTGAAGTATTTGCCGAAAGCTGCCGTGA
AGATCTTGAACCATTTTTGGGGCTGCATTATCCGCATACTGATATTCCGGTTCAGGCCAGAGAATTGTATATCAAAAATC
AGCTTCGATTAATTGTAGATATTAATTATAAACCCGTTCCAATATTTACGATTGATGATAATAAAGAAAATAAAAATCTC
GATTTAAGCCTTTCTATATTAAGAAGTACGTCTCCAATTCACGTAGAATATTTAAAAAATATGGGAGTTGGCGCAACACT
TACCATTTCGCTTATTCATCACGACAGACTTTGGGGATTAATTGCCTGTCATCATTATTCTAAAAAGAATATTTCGCCGG
AAATTAGACTGGCAGCAAAACTTCAGGGACAGTTTATAACTTCTCAAATTGATATCAGGCAATCAAATGATGAGAATGTA
AGCGCGCAAAGAGCATCTTTAGCTCTTGAAGAATTAACGAGTTTAGAACTGCCGCTTTCAGATGACTCATTAGAAACGAT
TGTCAATACTCAGGAAATTTTAAATTTATGCAATGCCTCTGGTGTATCTGTTTCAACAAAGGATAAAATTTATAAAAGTA
CTTTAGCACCTTCTGATGATTATATCAGAACCTTAACAGAGCAGATTACCAAACAAATACAGGATAAAACTTTTGTTACC
AATAAGCTGAGCGATTATTTTTCTGAAATAGAACGCTGTCCTGATTTTGCAGGTATTTTGTATCATTCTCTAGACAGTCA
CAGCCATATTATTTGGTACAGACCCGAAACAATATCTGAAATTAATTGGGGAGGAGATCCGGAAAAAGCGATTGTAAAAG
ACAATAACGGACTGCATCCTCGAAATTCATTTAATATTTGGAAACAGATTATAAAAAACCAGAGCAATACCTGGAAACAA
TATGAAATAAACACGGCAATACGCTATTCGCATACGCTTCACAATCATTTAATGCTGATAATGCTCAGCAAGGAAGAAGA
AAAATATCGTACGCAGAGTGAGGTATTGAAAGAAACCAATTCAGAACTTGAAAACATCAACTGGATTAGTACACACGATT
TACAGGAACCCCTGCGTAAAATTCAGATGATTACTTCAAAAATGCTTACTGAACTTGATGTTATTCCTCTGGAATCTATT
CACAGCTCATTAGTAAGAGTATCAAAATCAGCAGGCAGAATGAGAATTCTGCTCGAAGACATTTTAAAATTTACCAGAAT
AAAAAACACCAGAGATGTACTGCAAAAAGTAGATTTAAATCAAATTTTAAAAACTACAACGGCAGAAATGAAAGAAAACA
TCAAAGAAAGCAAAGCGGTAATACAAAGCGAAAACCTTCCGGAAGTTTATGCCGTAAGTTTTTTAATGAGACAGCTGTTT
TCAAACCTCATTCAAAATTCGCTAAAATATGCATCGCCGGACAGATCTCCGGTTATTAAAATCACAGCTTCTCAGGAACC
TGAGCTGTTTGGGCATTTAAACAAAATTTACTGCCATTGGGTTAATTTTTCAGATAACGGGATTGGTTTTGAACAACAAT
ATGCCGAAACGATTTTTAAAGTTTTCTCCAGACTTCATAATCAGGATGAATATACCGGTTCTGGAGTAGGTCTGGCTTTA
TGTAAAAAAATCATGCAGACCGTTGGAGGTAATATTGAAGCTGTTGGAAAAGTAGGAGAAGGGACCGAAATAAAAATTTA
TTTTCCGTGTGACCCGGAAGAAACTCTTTTGTAA

Upstream 100 bases:

>100_bases
CAGAGTATGAACAAAATAATAATTGCGCAAATAGTATTATAGAAGGAGCTGTATATGCTTTTGATAGTATTTACAATCAT
TTCGGGAGCATAAAAAAATA

Downstream 100 bases:

>100_bases
TTATATCCATTCTCCCGAAGCATCATAATTACCGGGTAAATAAGTAAGATACTGTACCATTCTGGGGTTCTTGCCTTTAT
TTGGCGTTGCACAATGCGGT

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 757; Mature: 757

Protein sequence:

>757_residues
MNIKDIVNRDLVTLTNCEHEPIHIPGSIQPHGFLIGLDSDLKIDFCTANISLFVDLQHTDILGKNFTAIFGSKQQKQILD
YINEDKIQNVFPLEINLLGKSFQVSIHKSYDIYVLEAELKFADREKLADVYTQTIQFVTQMNNTTSLKDLCALVAEGTRE
ITGYDRVMIYKFDELYNGEVFAESCREDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYKPVPIFTIDDNKENKNL
DLSLSILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPEIRLAAKLQGQFITSQIDIRQSNDENV
SAQRASLALEELTSLELPLSDDSLETIVNTQEILNLCNASGVSVSTKDKIYKSTLAPSDDYIRTLTEQITKQIQDKTFVT
NKLSDYFSEIERCPDFAGILYHSLDSHSHIIWYRPETISEINWGGDPEKAIVKDNNGLHPRNSFNIWKQIIKNQSNTWKQ
YEINTAIRYSHTLHNHLMLIMLSKEEEKYRTQSEVLKETNSELENINWISTHDLQEPLRKIQMITSKMLTELDVIPLESI
HSSLVRVSKSAGRMRILLEDILKFTRIKNTRDVLQKVDLNQILKTTTAEMKENIKESKAVIQSENLPEVYAVSFLMRQLF
SNLIQNSLKYASPDRSPVIKITASQEPELFGHLNKIYCHWVNFSDNGIGFEQQYAETIFKVFSRLHNQDEYTGSGVGLAL
CKKIMQTVGGNIEAVGKVGEGTEIKIYFPCDPEETLL

Sequences:

>Translated_757_residues
MNIKDIVNRDLVTLTNCEHEPIHIPGSIQPHGFLIGLDSDLKIDFCTANISLFVDLQHTDILGKNFTAIFGSKQQKQILD
YINEDKIQNVFPLEINLLGKSFQVSIHKSYDIYVLEAELKFADREKLADVYTQTIQFVTQMNNTTSLKDLCALVAEGTRE
ITGYDRVMIYKFDELYNGEVFAESCREDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYKPVPIFTIDDNKENKNL
DLSLSILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPEIRLAAKLQGQFITSQIDIRQSNDENV
SAQRASLALEELTSLELPLSDDSLETIVNTQEILNLCNASGVSVSTKDKIYKSTLAPSDDYIRTLTEQITKQIQDKTFVT
NKLSDYFSEIERCPDFAGILYHSLDSHSHIIWYRPETISEINWGGDPEKAIVKDNNGLHPRNSFNIWKQIIKNQSNTWKQ
YEINTAIRYSHTLHNHLMLIMLSKEEEKYRTQSEVLKETNSELENINWISTHDLQEPLRKIQMITSKMLTELDVIPLESI
HSSLVRVSKSAGRMRILLEDILKFTRIKNTRDVLQKVDLNQILKTTTAEMKENIKESKAVIQSENLPEVYAVSFLMRQLF
SNLIQNSLKYASPDRSPVIKITASQEPELFGHLNKIYCHWVNFSDNGIGFEQQYAETIFKVFSRLHNQDEYTGSGVGLAL
CKKIMQTVGGNIEAVGKVGEGTEIKIYFPCDPEETLL
>Mature_757_residues
MNIKDIVNRDLVTLTNCEHEPIHIPGSIQPHGFLIGLDSDLKIDFCTANISLFVDLQHTDILGKNFTAIFGSKQQKQILD
YINEDKIQNVFPLEINLLGKSFQVSIHKSYDIYVLEAELKFADREKLADVYTQTIQFVTQMNNTTSLKDLCALVAEGTRE
ITGYDRVMIYKFDELYNGEVFAESCREDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYKPVPIFTIDDNKENKNL
DLSLSILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPEIRLAAKLQGQFITSQIDIRQSNDENV
SAQRASLALEELTSLELPLSDDSLETIVNTQEILNLCNASGVSVSTKDKIYKSTLAPSDDYIRTLTEQITKQIQDKTFVT
NKLSDYFSEIERCPDFAGILYHSLDSHSHIIWYRPETISEINWGGDPEKAIVKDNNGLHPRNSFNIWKQIIKNQSNTWKQ
YEINTAIRYSHTLHNHLMLIMLSKEEEKYRTQSEVLKETNSELENINWISTHDLQEPLRKIQMITSKMLTELDVIPLESI
HSSLVRVSKSAGRMRILLEDILKFTRIKNTRDVLQKVDLNQILKTTTAEMKENIKESKAVIQSENLPEVYAVSFLMRQLF
SNLIQNSLKYASPDRSPVIKITASQEPELFGHLNKIYCHWVNFSDNGIGFEQQYAETIFKVFSRLHNQDEYTGSGVGLAL
CKKIMQTVGGNIEAVGKVGEGTEIKIYFPCDPEETLL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788713, Length=183, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86611; Mature: 86611

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKDIVNRDLVTLTNCEHEPIHIPGSIQPHGFLIGLDSDLKIDFCTANISLFVDLQHTD
CCCHHHHCCCCEEEECCCCCCEECCCCCCCCEEEEECCCCCEEEEEEECEEEEEEEECCC
ILGKNFTAIFGSKQQKQILDYINEDKIQNVFPLEINLLGKSFQVSIHKSYDIYVLEAELK
CCCCCCCEECCCCHHHHHHHHHCHHHCCCCCCEEEEEECCEEEEEEECCEEEEEEEEECC
FADREKLADVYTQTIQFVTQMNNTTSLKDLCALVAEGTREITGYDRVMIYKFDELYNGEV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHCCCHH
FAESCREDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYKPVPIFTIDDNKENKNL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCEEEEEECCCCCEEEEEECCCCCCCCC
DLSLSILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPEIRLAAK
EEEEEEECCCCCEEHHHHHCCCCCEEEEEEEEEHHHHHHHHHEECCCCCCCCCCEEEEEE
LQGQFITSQIDIRQSNDENVSAQRASLALEELTSLELPLSDDSLETIVNTQEILNLCNAS
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
GVSVSTKDKIYKSTLAPSDDYIRTLTEQITKQIQDKTFVTNKLSDYFSEIERCPDFAGIL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
YHSLDSHSHIIWYRPETISEINWGGDPEKAIVKDNNGLHPRNSFNIWKQIIKNQSNTWKQ
HHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEE
YEINTAIRYSHTLHNHLMLIMLSKEEEKYRTQSEVLKETNSELENINWISTHDLQEPLRK
EEECEEEEEHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IQMITSKMLTELDVIPLESIHSSLVRVSKSAGRMRILLEDILKFTRIKNTRDVLQKVDLN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCHH
QILKTTTAEMKENIKESKAVIQSENLPEVYAVSFLMRQLFSNLIQNSLKYASPDRSPVIK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
ITASQEPELFGHLNKIYCHWVNFSDNGIGFEQQYAETIFKVFSRLHNQDEYTGSGVGLAL
EECCCCCHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
CKKIMQTVGGNIEAVGKVGEGTEIKIYFPCDPEETLL
HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MNIKDIVNRDLVTLTNCEHEPIHIPGSIQPHGFLIGLDSDLKIDFCTANISLFVDLQHTD
CCCHHHHCCCCEEEECCCCCCEECCCCCCCCEEEEECCCCCEEEEEEECEEEEEEEECCC
ILGKNFTAIFGSKQQKQILDYINEDKIQNVFPLEINLLGKSFQVSIHKSYDIYVLEAELK
CCCCCCCEECCCCHHHHHHHHHCHHHCCCCCCEEEEEECCEEEEEEECCEEEEEEEEECC
FADREKLADVYTQTIQFVTQMNNTTSLKDLCALVAEGTREITGYDRVMIYKFDELYNGEV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHCCCHH
FAESCREDLEPFLGLHYPHTDIPVQARELYIKNQLRLIVDINYKPVPIFTIDDNKENKNL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCEEEEEECCCCCEEEEEECCCCCCCCC
DLSLSILRSTSPIHVEYLKNMGVGATLTISLIHHDRLWGLIACHHYSKKNISPEIRLAAK
EEEEEEECCCCCEEHHHHHCCCCCEEEEEEEEEHHHHHHHHHEECCCCCCCCCCEEEEEE
LQGQFITSQIDIRQSNDENVSAQRASLALEELTSLELPLSDDSLETIVNTQEILNLCNAS
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
GVSVSTKDKIYKSTLAPSDDYIRTLTEQITKQIQDKTFVTNKLSDYFSEIERCPDFAGIL
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
YHSLDSHSHIIWYRPETISEINWGGDPEKAIVKDNNGLHPRNSFNIWKQIIKNQSNTWKQ
HHHCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCEE
YEINTAIRYSHTLHNHLMLIMLSKEEEKYRTQSEVLKETNSELENINWISTHDLQEPLRK
EEECEEEEEHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
IQMITSKMLTELDVIPLESIHSSLVRVSKSAGRMRILLEDILKFTRIKNTRDVLQKVDLN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCHH
QILKTTTAEMKENIKESKAVIQSENLPEVYAVSFLMRQLFSNLIQNSLKYASPDRSPVIK
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
ITASQEPELFGHLNKIYCHWVNFSDNGIGFEQQYAETIFKVFSRLHNQDEYTGSGVGLAL
EECCCCCHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
CKKIMQTVGGNIEAVGKVGEGTEIKIYFPCDPEETLL
HHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]