Click here to switch to the map view.

The map label for this gene is hypC [H]

Identifier: 146301642

GI number: 146301642

Start: 4650251

End: 4650487

Strand: Reverse

Name: hypC [H]

Synonym: Fjoh_3903

Alternate gene names: 146301642

Gene position: 4650487-4650251 (Counterclockwise)

Preceding gene: 146301643

Following gene: 146301641

Centisome position: 76.28

GC content: 36.71

Gene sequence:

>237_bases
ATGTGTTTAGCAGTTCCCGGTCGACTTGAAAAAATCACAGATGAGCTTGATGAAACGTTTAGAATTGGAAATGTTTCTTT
TGACGGTATTATCAAAGAAGTCAATTTAGCACTTGTTCCAGAGGCAGTAGAAGGTGATTACCTTTTAGTTCATGTTGGCG
CTGCAATTGGAATTATTGATGAAGATGAAGCCAAAAGGACAATGGAGATTTTAAAAGAAATGGGCGAAGAGATTTAA

Upstream 100 bases:

>100_bases
AGGTAAATCCGCATTTGACTTTCTTTGAAGTTTCTGCAGCATCAGGAGAAGGTTTAGCAGCCTGGTACGATTATTTAACA
AAATCTATAAAACAATAAGT

Downstream 100 bases:

>100_bases
TGCATAAAAAATGGAAAAAGAACAGGAAGTAATTCACCTGCATCACGGAAGCGGCGGTGAACACATGACCAAATTACTCA
ATGAAGTAATTTTTAAGATT

Product: hydrogenase assembly chaperone hypC/hupF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MCLAVPGRLEKITDELDETFRIGNVSFDGIIKEVNLALVPEAVEGDYLLVHVGAAIGIIDEDEAKRTMEILKEMGEEI

Sequences:

>Translated_78_residues
MCLAVPGRLEKITDELDETFRIGNVSFDGIIKEVNLALVPEAVEGDYLLVHVGAAIGIIDEDEAKRTMEILKEMGEEI
>Mature_78_residues
MCLAVPGRLEKITDELDETFRIGNVSFDGIIKEVNLALVPEAVEGDYLLVHVGAAIGIIDEDEAKRTMEILKEMGEEI

Specific function: May Have A Specific Role In The Maturation Of The Large Subunits Of Hyd1 And Hyd2. [C]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

Organism=Escherichia coli, GI1789364, Length=82, Percent_Identity=39.0243902439024, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 8587; Mature: 8587

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLAVPGRLEKITDELDETFRIGNVSFDGIIKEVNLALVPEAVEGDYLLVHVGAAIGIID
CEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECCEEECCC
EDEAKRTMEILKEMGEEI
CHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCLAVPGRLEKITDELDETFRIGNVSFDGIIKEVNLALVPEAVEGDYLLVHVGAAIGIID
CEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECCEEECCC
EDEAKRTMEILKEMGEEI
CHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]