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The map label for this gene is xerD [H]

Identifier: 146301452

GI number: 146301452

Start: 4401966

End: 4402883

Strand: Reverse

Name: xerD [H]

Synonym: Fjoh_3710

Alternate gene names: 146301452

Gene position: 4402883-4401966 (Counterclockwise)

Preceding gene: 146301453

Following gene: 146301451

Centisome position: 72.22

GC content: 40.52

Gene sequence:

>918_bases
ATGAAAAACAGGATACAAAATAAAGATTTCCGAAGGCTCTTGGATGCCTTTGACAGTTTTATAAAGGTCAGGAATTACAA
AACAGGAAACAGCAGAATGTACCAGAATACCTTGATAGAATTCTTGGTCTGGCTGGAAGAATCGGGAATCAGCAGGATTC
AGGAGCTGACTTCCAAAGAATCTATTAAATACTTTGAGTATTTAATAGCACGGCCAAAGCTCAGGGGCGAAGGAACACTG
TCACAGAAAAGCATCAAATTTCATCTTTTCGTACAGGGATTGTTCCTTTTGAACCTGATGGAAAACAAGGAAATTGAGAA
CGGGTATTACATACCCAGTTATGAGGGAGGCAATGAGAAAGCCAGAAACACACTTAGTGTTGAAGAAATAAAAAGCTTAT
ATAAAAATGCAGAGAATGAACTTGAACGGGCTTTGCTCTCTGTAGCTTATGGATGCGGGCTGAGGCGTTCTGAAATCAGT
GCGCTGGATTTAAAGGATGTAAAGCTGGCTACGGGAATGGTTGTTGTCAGAAGCGGAAAAAACAGCAAGAGGCGTGAAGT
TCCCATGAGCGATACGGTTATGGGATACTTAAAAAAGTACATTCAGGAAGAGCGCAGTCAAAGGCTTGCGGGAAAAAACC
AGACGGAAGAAGCCTTTTTTATTAATTCCAAAGGCAGGCGAAGTACAGGGGAAAACCTGAATGATATCCTGAAAAAAATG
ATAGAGCAGACTAAGAATTTTGAACTTATCCAAAAGGATATTACGCTCCACTGCCTCAGGCACAGCATTGCCAATCATCT
GGCTGAGAATAATGCAGGGATTGATTTTATAAGAAGGTTTCTGGGGCATTCCGATATCAATACAACCTATATCTACGCTC
TTAAAAACAAGAAACGAAAACCGATCGTAACCTTTTAA

Upstream 100 bases:

>100_bases
AAGCCCAGTGTTTACTGACCATACGATACTGGTGTTCCGTGTTCCACGGAGTGCGCAAGCGACGGGTTTCAATTATAATA
ATTACAGAACACTAAAAAAG

Downstream 100 bases:

>100_bases
ATAATCAGCTATGCCAAAACAGACACTAGAGCAGTTCCTGCTCCAAAGTTATAGCCCACAGACCGTATCAAGCTATTTGT
TTGCTATCAATCACTTTTTA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKNRIQNKDFRRLLDAFDSFIKVRNYKTGNSRMYQNTLIEFLVWLEESGISRIQELTSKESIKYFEYLIARPKLRGEGTL
SQKSIKFHLFVQGLFLLNLMENKEIENGYYIPSYEGGNEKARNTLSVEEIKSLYKNAENELERALLSVAYGCGLRRSEIS
ALDLKDVKLATGMVVVRSGKNSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKM
IEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRKPIVTF

Sequences:

>Translated_305_residues
MKNRIQNKDFRRLLDAFDSFIKVRNYKTGNSRMYQNTLIEFLVWLEESGISRIQELTSKESIKYFEYLIARPKLRGEGTL
SQKSIKFHLFVQGLFLLNLMENKEIENGYYIPSYEGGNEKARNTLSVEEIKSLYKNAENELERALLSVAYGCGLRRSEIS
ALDLKDVKLATGMVVVRSGKNSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKM
IEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRKPIVTF
>Mature_305_residues
MKNRIQNKDFRRLLDAFDSFIKVRNYKTGNSRMYQNTLIEFLVWLEESGISRIQELTSKESIKYFEYLIARPKLRGEGTL
SQKSIKFHLFVQGLFLLNLMENKEIENGYYIPSYEGGNEKARNTLSVEEIKSLYKNAENELERALLSVAYGCGLRRSEIS
ALDLKDVKLATGMVVVRSGKNSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKM
IEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRKPIVTF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=151, Percent_Identity=31.1258278145695, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789261, Length=155, Percent_Identity=29.6774193548387, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35430; Mature: 35430

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRIQNKDFRRLLDAFDSFIKVRNYKTGNSRMYQNTLIEFLVWLEESGISRIQELTSKE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIKYFEYLIARPKLRGEGTLSQKSIKFHLFVQGLFLLNLMENKEIENGYYIPSYEGGNEK
HHHHHHHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH
ARNTLSVEEIKSLYKNAENELERALLSVAYGCGLRRSEISALDLKDVKLATGMVVVRSGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEEECCC
NSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
IEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRK
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCC
PIVTF
CCCCC
>Mature Secondary Structure
MKNRIQNKDFRRLLDAFDSFIKVRNYKTGNSRMYQNTLIEFLVWLEESGISRIQELTSKE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIKYFEYLIARPKLRGEGTLSQKSIKFHLFVQGLFLLNLMENKEIENGYYIPSYEGGNEK
HHHHHHHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH
ARNTLSVEEIKSLYKNAENELERALLSVAYGCGLRRSEISALDLKDVKLATGMVVVRSGK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCEEEEECCC
NSKRREVPMSDTVMGYLKKYIQEERSQRLAGKNQTEEAFFINSKGRRSTGENLNDILKKM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
IEQTKNFELIQKDITLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKRK
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCC
PIVTF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]