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The map label for this gene is yrdD [C]

Identifier: 146301433

GI number: 146301433

Start: 4383609

End: 4384388

Strand: Reverse

Name: yrdD [C]

Synonym: Fjoh_3691

Alternate gene names: 146301433

Gene position: 4384388-4383609 (Counterclockwise)

Preceding gene: 146301435

Following gene: 146301432

Centisome position: 71.91

GC content: 25.64

Gene sequence:

>780_bases
ATGCTTTATATTAGATCAAATTTAAAACTAGAATTTATGGAACTAATTTTATTAATTCTATTTTTTTTACTAATGCTTAT
TTTTGGTTCTTATAAGTCAAAAATTAAAGGGATAATTGGAGAGAAAAAGGTTTCTTCAATATTATATTTTTTAGATAAGT
CGGATTATAAGGTTATTAATAATGTGATCATAAAAACAGGTAATATAAGTGCTCAAATTGATCATATAGTAATTTCTAGT
TTTGGAGTTTTTGTTATTGAAACGAAAAATTATAAAGGATGGATTGTGGGATATGAAAACTCTAAATACTGGACTCAAGT
AATATATAAATATAAAAAAAAGTTTTATAATCCCATTCTCCAAAATGCAGGGCATATAAGAGCCTTGAAAAACTACCTAA
AAGGATACAAAGATTTAGAGTATAGATCTATTGTCGTTTTCTGTACAAAAGCCAGGATAAAAGTAGACTCCGACAGTGAC
GTTGTTAATGCAAATAGTCTTATAAAAACGATTAAAAAATATTCAAGTGTAAATCTATCGAAAACCGATAAAGAAAATAT
TTTTCAAATAATTAGTACTTCTAACTTAGTAAAATCAATTGATCAAAGAGAACATATTAATTCTGTTAAACAAAGAATTA
ATTTTCTTGATAAGAAGACAATCCAAGAAATTAAATGTCCAAAATGCGGAAATAAAATGATTCAACGCCAAGGGAAATTC
GGAATTTTTTTGGGATGTAAATCGTATCCAAAGTGTAATTATACTCAACAAGAATTTTAA

Upstream 100 bases:

>100_bases
TAAGATATTTTTTTCTAAAAAGTTCAGATTTATCTTTTTCTTCATATCTAAATAATTTGCCGAAGATTTTTATATAATAT
TTAGTTGATAGTATTCTCTT

Downstream 100 bases:

>100_bases
TAAACTTTGCATGGAAAATACTGCTAGTGACATCTCTTGAAATCGAAATAAATAAAATTTCAAAAAATGTTGTATATAAA
AATTCAAATGTTCTACGAAA

Product: NERD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLYIRSNLKLEFMELILLILFFLLMLIFGSYKSKIKGIIGEKKVSSILYFLDKSDYKVINNVIIKTGNISAQIDHIVISS
FGVFVIETKNYKGWIVGYENSKYWTQVIYKYKKKFYNPILQNAGHIRALKNYLKGYKDLEYRSIVVFCTKARIKVDSDSD
VVNANSLIKTIKKYSSVNLSKTDKENIFQIISTSNLVKSIDQREHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKF
GIFLGCKSYPKCNYTQQEF

Sequences:

>Translated_259_residues
MLYIRSNLKLEFMELILLILFFLLMLIFGSYKSKIKGIIGEKKVSSILYFLDKSDYKVINNVIIKTGNISAQIDHIVISS
FGVFVIETKNYKGWIVGYENSKYWTQVIYKYKKKFYNPILQNAGHIRALKNYLKGYKDLEYRSIVVFCTKARIKVDSDSD
VVNANSLIKTIKKYSSVNLSKTDKENIFQIISTSNLVKSIDQREHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKF
GIFLGCKSYPKCNYTQQEF
>Mature_259_residues
MLYIRSNLKLEFMELILLILFFLLMLIFGSYKSKIKGIIGEKKVSSILYFLDKSDYKVINNVIIKTGNISAQIDHIVISS
FGVFVIETKNYKGWIVGYENSKYWTQVIYKYKKKFYNPILQNAGHIRALKNYLKGYKDLEYRSIVVFCTKARIKVDSDSD
VVNANSLIKTIKKYSSVNLSKTDKENIFQIISTSNLVKSIDQREHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKF
GIFLGCKSYPKCNYTQQEF

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NERD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011528 [H]

Pfam domain/function: PF08378 NERD [H]

EC number: NA

Molecular weight: Translated: 30151; Mature: 30151

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYIRSNLKLEFMELILLILFFLLMLIFGSYKSKIKGIIGEKKVSSILYFLDKSDYKVIN
CEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
NVIIKTGNISAQIDHIVISSFGVFVIETKNYKGWIVGYENSKYWTQVIYKYKKKFYNPIL
HHHEECCCCCHHHHHEEECCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
QNAGHIRALKNYLKGYKDLEYRSIVVFCTKARIKVDSDSDVVNANSLIKTIKKYSSVNLS
HCCCHHHHHHHHHCCCCCCCCEEEEEEEEECEEEECCCCCEECHHHHHHHHHHHHCCCCC
KTDKENIFQIISTSNLVKSIDQREHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCE
GIFLGCKSYPKCNYTQQEF
EEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLYIRSNLKLEFMELILLILFFLLMLIFGSYKSKIKGIIGEKKVSSILYFLDKSDYKVIN
CEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
NVIIKTGNISAQIDHIVISSFGVFVIETKNYKGWIVGYENSKYWTQVIYKYKKKFYNPIL
HHHEECCCCCHHHHHEEECCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
QNAGHIRALKNYLKGYKDLEYRSIVVFCTKARIKVDSDSDVVNANSLIKTIKKYSSVNLS
HCCCHHHHHHHHHCCCCCCCCEEEEEEEEECEEEECCCCCEECHHHHHHHHHHHHCCCCC
KTDKENIFQIISTSNLVKSIDQREHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCE
GIFLGCKSYPKCNYTQQEF
EEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10515943; 12004073 [H]