| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301429
Identifier: 146301429
GI number: 146301429
Start: 4378411
End: 4380195
Strand: Reverse
Name: 146301429
Synonym: Fjoh_3687
Alternate gene names: NA
Gene position: 4380195-4378411 (Counterclockwise)
Preceding gene: 146301430
Following gene: 146301428
Centisome position: 71.84
GC content: 28.4
Gene sequence:
>1785_bases ATGACTTCAGATAATTTTAAAATAGTAAGTGTTTCCTCAAGTTTTATAAAAATTGAAGTAATAGATCCTTCTTTATTTGA AAATCAATTTAATATTGGAAGCTATATAAAGATCCCATACAAAAATATTGAAAATAAGTATGTGGTTGGTGTAATTGAAA ATTATAATATAAAAGATAATAATATTTCGAAAGGAGATGGAATTGAGGAAACAATATCAAATGGACCATCTTTTGTTCTT GAGGTTAAATTAACTGGTACAATGACTAAATTTAATGATTCAGATTTATTTGAAAGAGGCGGTCATGGTATACCCCTTCC TCCAAATAACGGTATTGAATTGTTAAATGAGAAAGAATTGAATAATATATATTCAGGAAAATTAGTAGAGAATGATAAAT TTTGTTTTTCTAAATTAGTTCAAAATGTAGAGATTGATGTACCAGTTAGTGGCAATAAATTTTTTAATAAACATTTTGCA ATTGTTGGCTCGACCGGTTCAGGAAAATCTCACACTGTTGCTAAAATACTACAGGAGGCTTTAATTGCCAAAAAAGGAAG CTATGAAGGTTTAAACAATTCTCATATTGTAATTTTTGATATTCACGGTGAATATAAAACAGCTTTTCCACAAGCAAACT ATATTGATATACAGAACCTAGTATTGCCATACTGGCTTTTAAATAGTGAAGAATTGGAAGAATTGTTTATCGAAACCGAG GCTAATGATCATAATCAAAGAAGTGCATTTCAAGAGGCTATTACATCAAATAAGAAATTAAAAAGCACATTAGATCCAAA ATTGAAAGCAAAATTAAATTATGATTCTCCATCTTTTTTTGATTTAAATGAGATCTTAATATATTTTAAAAACAGGAATA ATGAGCAAAAACAAAAATCAAATACTATAGAATGGTTTGACTTAAAAGGTGAAAAATTTATATTTAATGAAGAGACAAAT CATAATTTATTTTCAGGAATATTAAAACCGGTTGACGGAGCAACTACTGGCACACAAAATGCCAGATTTATTAATTTTAT AAATAGATTAGAAATTAAATTAAATGATAAACGTTTAGATTTTTTATTAGGTGATGCTTCAAAAAAAATAACTTTTATAG ATACTATCAAGCAATTCATTGGTTATCCTTGTAAGGTACAAAATGAAGAAGGCGTAATCAACAAAGAAAAATCAAATATT ACAATAATTGATTTAGGAGGTATACCTTTTGAAGTGCTTAGTATAACTGTCTCACTGATTTCTAGAATGCTCTTTGAATT TGGTTATCATTCCACTAAACTTGCTAGTCATGAAGATGATTGTGAAGTGCCTTTGTTATTAGTATATGAAGAGGCACATA AGTATGTTCCAAAATCTGACTTGGTAAAATTTAGAGCCTCTAAAAATGCGATTGAACGAATTGCTAAGGAAGGTAGAAAA TATGGAGTTACATTATCGATTGTAAGCCAAAGACCTTCTGAAATTTCAGATACAATTTTTTCTCAATGTAATAATTTTGT AACGATGAGGTTGACTAATCCAGAAGATCAAAATTATGTAAAAAAATTATTACCCGATACTTTAGGGAATTTAACAGACT CTTTATCAACTCTTCAATCTGGAGAGGCTCTAATTATAGGAGAAGCAATTGCTTTGCCTTCATTAGTAAAGATAAATCGA TGTGAACCAGAACCAAAATCTTCTGATATTAAATATTTTGAAATTTGGAAAGATCCTTGGATTGATGCTGAAATTCAAAA GGTTATTGGTCTTTGGCAAAAATAA
Upstream 100 bases:
>100_bases TTTCATGGAAGATTTGAATAATAAATTAGAAGAGAAATCTTTCATAAAAATAGATCAAATAGATACAAAACAAGTTCAAA AACTTTTTAATACTTAAATC
Downstream 100 bases:
>100_bases TCTTTTTTAAAAGTAATGTACGTAGTTTGTGCGAATTATTGTTTTTTATGTGATTTTAATTTCTATAAATTCCTCTTACT TTTAGTGATATTTACAACGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MTSDNFKIVSVSSSFIKIEVIDPSLFENQFNIGSYIKIPYKNIENKYVVGVIENYNIKDNNISKGDGIEETISNGPSFVL EVKLTGTMTKFNDSDLFERGGHGIPLPPNNGIELLNEKELNNIYSGKLVENDKFCFSKLVQNVEIDVPVSGNKFFNKHFA IVGSTGSGKSHTVAKILQEALIAKKGSYEGLNNSHIVIFDIHGEYKTAFPQANYIDIQNLVLPYWLLNSEELEELFIETE ANDHNQRSAFQEAITSNKKLKSTLDPKLKAKLNYDSPSFFDLNEILIYFKNRNNEQKQKSNTIEWFDLKGEKFIFNEETN HNLFSGILKPVDGATTGTQNARFINFINRLEIKLNDKRLDFLLGDASKKITFIDTIKQFIGYPCKVQNEEGVINKEKSNI TIIDLGGIPFEVLSITVSLISRMLFEFGYHSTKLASHEDDCEVPLLLVYEEAHKYVPKSDLVKFRASKNAIERIAKEGRK YGVTLSIVSQRPSEISDTIFSQCNNFVTMRLTNPEDQNYVKKLLPDTLGNLTDSLSTLQSGEALIIGEAIALPSLVKINR CEPEPKSSDIKYFEIWKDPWIDAEIQKVIGLWQK
Sequences:
>Translated_594_residues MTSDNFKIVSVSSSFIKIEVIDPSLFENQFNIGSYIKIPYKNIENKYVVGVIENYNIKDNNISKGDGIEETISNGPSFVL EVKLTGTMTKFNDSDLFERGGHGIPLPPNNGIELLNEKELNNIYSGKLVENDKFCFSKLVQNVEIDVPVSGNKFFNKHFA IVGSTGSGKSHTVAKILQEALIAKKGSYEGLNNSHIVIFDIHGEYKTAFPQANYIDIQNLVLPYWLLNSEELEELFIETE ANDHNQRSAFQEAITSNKKLKSTLDPKLKAKLNYDSPSFFDLNEILIYFKNRNNEQKQKSNTIEWFDLKGEKFIFNEETN HNLFSGILKPVDGATTGTQNARFINFINRLEIKLNDKRLDFLLGDASKKITFIDTIKQFIGYPCKVQNEEGVINKEKSNI TIIDLGGIPFEVLSITVSLISRMLFEFGYHSTKLASHEDDCEVPLLLVYEEAHKYVPKSDLVKFRASKNAIERIAKEGRK YGVTLSIVSQRPSEISDTIFSQCNNFVTMRLTNPEDQNYVKKLLPDTLGNLTDSLSTLQSGEALIIGEAIALPSLVKINR CEPEPKSSDIKYFEIWKDPWIDAEIQKVIGLWQK >Mature_593_residues TSDNFKIVSVSSSFIKIEVIDPSLFENQFNIGSYIKIPYKNIENKYVVGVIENYNIKDNNISKGDGIEETISNGPSFVLE VKLTGTMTKFNDSDLFERGGHGIPLPPNNGIELLNEKELNNIYSGKLVENDKFCFSKLVQNVEIDVPVSGNKFFNKHFAI VGSTGSGKSHTVAKILQEALIAKKGSYEGLNNSHIVIFDIHGEYKTAFPQANYIDIQNLVLPYWLLNSEELEELFIETEA NDHNQRSAFQEAITSNKKLKSTLDPKLKAKLNYDSPSFFDLNEILIYFKNRNNEQKQKSNTIEWFDLKGEKFIFNEETNH NLFSGILKPVDGATTGTQNARFINFINRLEIKLNDKRLDFLLGDASKKITFIDTIKQFIGYPCKVQNEEGVINKEKSNIT IIDLGGIPFEVLSITVSLISRMLFEFGYHSTKLASHEDDCEVPLLLVYEEAHKYVPKSDLVKFRASKNAIERIAKEGRKY GVTLSIVSQRPSEISDTIFSQCNNFVTMRLTNPEDQNYVKKLLPDTLGNLTDSLSTLQSGEALIIGEAIALPSLVKINRC EPEPKSSDIKYFEIWKDPWIDAEIQKVIGLWQK
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1565 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 67283; Mature: 67152
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSDNFKIVSVSSSFIKIEVIDPSLFENQFNIGSYIKIPYKNIENKYVVGVIENYNIKDN CCCCCEEEEEECCCEEEEEEECCHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC NISKGDGIEETISNGPSFVLEVKLTGTMTKFNDSDLFERGGHGIPLPPNNGIELLNEKEL CCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCCCCCCCCCCEECCHHHH NNIYSGKLVENDKFCFSKLVQNVEIDVPVSGNKFFNKHFAIVGSTGSGKSHTVAKILQEA CCCCCCEEECCCHHHHHHHHHCCEEEEECCCCCEECEEEEEEECCCCCCCHHHHHHHHHH LIAKKGSYEGLNNSHIVIFDIHGEYKTAFPQANYIDIQNLVLPYWLLNSEELEELFIETE HHHCCCCCCCCCCCEEEEEEECCCCEECCCCCCCEEHHHHHHHHEECCHHHHHHHHEECC ANDHNQRSAFQEAITSNKKLKSTLDPKLKAKLNYDSPSFFDLNEILIYFKNRNNEQKQKS CCCCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCEEHHHEEEEEECCCCHHHHHC NTIEWFDLKGEKFIFNEETNHNLFSGILKPVDGATTGTQNARFINFINRLEIKLNDKRLD CCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEECCCEEE FLLGDASKKITFIDTIKQFIGYPCKVQNEEGVINKEKSNITIIDLGGIPFEVLSITVSLI EEECCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH SRMLFEFGYHSTKLASHEDDCEVPLLLVYEEAHKYVPKSDLVKFRASKNAIERIAKEGRK HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC YGVTLSIVSQRPSEISDTIFSQCNNFVTMRLTNPEDQNYVKKLLPDTLGNLTDSLSTLQS EEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC GEALIIGEAIALPSLVKINRCEPEPKSSDIKYFEIWKDPWIDAEIQKVIGLWQK CCEEEEECHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC >Mature Secondary Structure TSDNFKIVSVSSSFIKIEVIDPSLFENQFNIGSYIKIPYKNIENKYVVGVIENYNIKDN CCCCEEEEEECCCEEEEEEECCHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC NISKGDGIEETISNGPSFVLEVKLTGTMTKFNDSDLFERGGHGIPLPPNNGIELLNEKEL CCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCHHHHCCCCCCCCCCCCCCEECCHHHH NNIYSGKLVENDKFCFSKLVQNVEIDVPVSGNKFFNKHFAIVGSTGSGKSHTVAKILQEA CCCCCCEEECCCHHHHHHHHHCCEEEEECCCCCEECEEEEEEECCCCCCCHHHHHHHHHH LIAKKGSYEGLNNSHIVIFDIHGEYKTAFPQANYIDIQNLVLPYWLLNSEELEELFIETE HHHCCCCCCCCCCCEEEEEEECCCCEECCCCCCCEEHHHHHHHHEECCHHHHHHHHEECC ANDHNQRSAFQEAITSNKKLKSTLDPKLKAKLNYDSPSFFDLNEILIYFKNRNNEQKQKS CCCCHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCCEEHHHEEEEEECCCCHHHHHC NTIEWFDLKGEKFIFNEETNHNLFSGILKPVDGATTGTQNARFINFINRLEIKLNDKRLD CCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEEEECCCEEE FLLGDASKKITFIDTIKQFIGYPCKVQNEEGVINKEKSNITIIDLGGIPFEVLSITVSLI EEECCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH SRMLFEFGYHSTKLASHEDDCEVPLLLVYEEAHKYVPKSDLVKFRASKNAIERIAKEGRK HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC YGVTLSIVSQRPSEISDTIFSQCNNFVTMRLTNPEDQNYVKKLLPDTLGNLTDSLSTLQS EEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC GEALIIGEAIALPSLVKINRCEPEPKSSDIKYFEIWKDPWIDAEIQKVIGLWQK CCEEEEECHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]