| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301408
Identifier: 146301408
GI number: 146301408
Start: 4360588
End: 4362147
Strand: Reverse
Name: 146301408
Synonym: Fjoh_3666
Alternate gene names: NA
Gene position: 4362147-4360588 (Counterclockwise)
Preceding gene: 146301409
Following gene: 146301407
Centisome position: 71.55
GC content: 28.72
Gene sequence:
>1560_bases ATGGGAATGTTTGACATTAAAGAGCGAAGATTAATTCCTAATTGGAGGGACTTTAAAAGAACTGTGCAATTGGGTGAGTT GAGTATATCAAATAAAAATATTGATAAAGTAGAAATAAATATCGATCATGTCATTCATGATTGGGGCTATAAAAAAAATG CAGGAACTGCTGCTGAAATGATTAATGCCTGCTATATTTCAGGAATTGCTAATATTTTAGAAATTAAGGAAGCGATTGAC TTTATCCATAAAAATCCTGAAAATAGTTCTGAAAGTTTATTAGAGCTGATTAATATTATTAATGAAAGTTCACAACAAGG GCATCAACAAAATTTCAAGCATTTATTAGAGACTGATTACGAAACAATAGAACAGTTCCAATCTCTTATTAATAATAAAG TTTTATACAAACTAATTAATAAAACAAAAAATAAAATAAGAGAAGAAATTCTTAATCCAATTAATTGGATTGAATTAGCA CGTTTATATTCTATAAATGGTCAATCAGATCAGGCAAAACCATCAGTATTAACAGCTTTACATTTAGCCCCTGATAATCG TTTTATATTGAGATCAGCAACTAGATACTTTATTCACAACGGTGATTATGATCAAGCACTTTATTATCTAAAAAAATCTA AATCATTAAAAAACGACCCTTGGCTTATTTCTGCTCATATTGCCACTTCTTCTTTAATGAATCGATATTCGCCATTAATT AAGACAGGTATTAGTTTAACTTCTTCTGGTCAATTTTCAAATTTTGAGTTAACGGAATTGTCTGGTTCTCTCGGTACATT AGAATTTAATGCAGGATCATTTAAAAATGCAAAACGATTATTTGAAAAATCTATGTTGGCTCCAAATGATAATAGTCTGG CTCAAATTGAATGGATAGCAAAAGATGACTATAGATTTAAAATAAACCTCTCTGAATTTGATAGTGTAATTAATCCTTTT GAGGCATATGCTATTGATAAGTTTGAAAAAGGGGATTGGAAAGAAGCCTTTTATAACTGTTTAAAATGGTTTTCGGATAC TCCATTTTCAAAAAGGCCAATATTACTTGGCTGCTATTTAGCAGGTTCATTGTTAAATGATGTTGATGCTGCAATAACGC TGTGTAAAATTGGACTAAAAGCCAATCCTCATCATGTTGTACTATTAAATAACATCATTTACTATTCAGCATTAGCTGGT AAATTTGAAAAAATTGACCATTATTTTGAGCAAATGAATATTTCTACTTTTGAGGATTTGCCAGAAAATGATAAGCCTGT TATTCAAGCTACTGCTGGATTGACAAATTTTAGAAGAGGAAAAATAGATGATGGGAAAAAATGGTATAAATTAGCGATTG TAAATAGTGAAAAAATTAAAAACGATTACTTTAAAAATTCAGCGATTCTTAACTATACCAGAGAATTGATAATAAGCAGA CAGCCAGAAAGATTTGAATATATTGAGACTGTTAAGAAAATGAAATTAGTAAATAAAGATTTAATATTTATAAAAGAAAG TATTTTAAAATTAAATCAATCAAGTGAAATAGTAATTTAG
Upstream 100 bases:
>100_bases TTCCTGTCGTATTTTCAACTACTAGAAACCAGTATGATTTCGGTAAGATAGTTACTAAACTGGATATTTTGGCAAAAAAA TCTTATTTAAAACTTTAGTT
Downstream 100 bases:
>100_bases ATTCTCTCAAGTTTTAAAAATAATGCTATAGAGTTTACAAGTATCTTTTAAATAATTTTTTAACTTACTTTAGATCAAAG TTGGTTTTCACATCTAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MGMFDIKERRLIPNWRDFKRTVQLGELSISNKNIDKVEINIDHVIHDWGYKKNAGTAAEMINACYISGIANILEIKEAID FIHKNPENSSESLLELINIINESSQQGHQQNFKHLLETDYETIEQFQSLINNKVLYKLINKTKNKIREEILNPINWIELA RLYSINGQSDQAKPSVLTALHLAPDNRFILRSATRYFIHNGDYDQALYYLKKSKSLKNDPWLISAHIATSSLMNRYSPLI KTGISLTSSGQFSNFELTELSGSLGTLEFNAGSFKNAKRLFEKSMLAPNDNSLAQIEWIAKDDYRFKINLSEFDSVINPF EAYAIDKFEKGDWKEAFYNCLKWFSDTPFSKRPILLGCYLAGSLLNDVDAAITLCKIGLKANPHHVVLLNNIIYYSALAG KFEKIDHYFEQMNISTFEDLPENDKPVIQATAGLTNFRRGKIDDGKKWYKLAIVNSEKIKNDYFKNSAILNYTRELIISR QPERFEYIETVKKMKLVNKDLIFIKESILKLNQSSEIVI
Sequences:
>Translated_519_residues MGMFDIKERRLIPNWRDFKRTVQLGELSISNKNIDKVEINIDHVIHDWGYKKNAGTAAEMINACYISGIANILEIKEAID FIHKNPENSSESLLELINIINESSQQGHQQNFKHLLETDYETIEQFQSLINNKVLYKLINKTKNKIREEILNPINWIELA RLYSINGQSDQAKPSVLTALHLAPDNRFILRSATRYFIHNGDYDQALYYLKKSKSLKNDPWLISAHIATSSLMNRYSPLI KTGISLTSSGQFSNFELTELSGSLGTLEFNAGSFKNAKRLFEKSMLAPNDNSLAQIEWIAKDDYRFKINLSEFDSVINPF EAYAIDKFEKGDWKEAFYNCLKWFSDTPFSKRPILLGCYLAGSLLNDVDAAITLCKIGLKANPHHVVLLNNIIYYSALAG KFEKIDHYFEQMNISTFEDLPENDKPVIQATAGLTNFRRGKIDDGKKWYKLAIVNSEKIKNDYFKNSAILNYTRELIISR QPERFEYIETVKKMKLVNKDLIFIKESILKLNQSSEIVI >Mature_518_residues GMFDIKERRLIPNWRDFKRTVQLGELSISNKNIDKVEINIDHVIHDWGYKKNAGTAAEMINACYISGIANILEIKEAIDF IHKNPENSSESLLELINIINESSQQGHQQNFKHLLETDYETIEQFQSLINNKVLYKLINKTKNKIREEILNPINWIELAR LYSINGQSDQAKPSVLTALHLAPDNRFILRSATRYFIHNGDYDQALYYLKKSKSLKNDPWLISAHIATSSLMNRYSPLIK TGISLTSSGQFSNFELTELSGSLGTLEFNAGSFKNAKRLFEKSMLAPNDNSLAQIEWIAKDDYRFKINLSEFDSVINPFE AYAIDKFEKGDWKEAFYNCLKWFSDTPFSKRPILLGCYLAGSLLNDVDAAITLCKIGLKANPHHVVLLNNIIYYSALAGK FEKIDHYFEQMNISTFEDLPENDKPVIQATAGLTNFRRGKIDDGKKWYKLAIVNSEKIKNDYFKNSAILNYTRELIISRQ PERFEYIETVKKMKLVNKDLIFIKESILKLNQSSEIVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59762; Mature: 59631
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMFDIKERRLIPNWRDFKRTVQLGELSISNKNIDKVEINIDHVIHDWGYKKNAGTAAEM CCCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCCEEEEEHHHHEECCCCCCCCCHHHHH INACYISGIANILEIKEAIDFIHKNPENSSESLLELINIINESSQQGHQQNFKHLLETDY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH ETIEQFQSLINNKVLYKLINKTKNKIREEILNPINWIELARLYSINGQSDQAKPSVLTAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEE HLAPDNRFILRSATRYFIHNGDYDQALYYLKKSKSLKNDPWLISAHIATSSLMNRYSPLI EECCCCCEEEEHHHHHEEECCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH KTGISLTSSGQFSNFELTELSGSLGTLEFNAGSFKNAKRLFEKSMLAPNDNSLAQIEWIA HHCCCEECCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEEE KDDYRFKINLSEFDSVINPFEAYAIDKFEKGDWKEAFYNCLKWFSDTPFSKRPILLGCYL CCCEEEEEEHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHH AGSLLNDVDAAITLCKIGLKANPHHVVLLNNIIYYSALAGKFEKIDHYFEQMNISTFEDL HHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC PENDKPVIQATAGLTNFRRGKIDDGKKWYKLAIVNSEKIKNDYFKNSAILNYTRELIISR CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHCC QPERFEYIETVKKMKLVNKDLIFIKESILKLNQSSEIVI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GMFDIKERRLIPNWRDFKRTVQLGELSISNKNIDKVEINIDHVIHDWGYKKNAGTAAEM CCCCCCCCCCCCCHHHHHHHHHHHCEEECCCCCCEEEEEHHHHEECCCCCCCCCHHHHH INACYISGIANILEIKEAIDFIHKNPENSSESLLELINIINESSQQGHQQNFKHLLETDY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH ETIEQFQSLINNKVLYKLINKTKNKIREEILNPINWIELARLYSINGQSDQAKPSVLTAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCEEEE HLAPDNRFILRSATRYFIHNGDYDQALYYLKKSKSLKNDPWLISAHIATSSLMNRYSPLI EECCCCCEEEEHHHHHEEECCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHH KTGISLTSSGQFSNFELTELSGSLGTLEFNAGSFKNAKRLFEKSMLAPNDNSLAQIEWIA HHCCCEECCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEEE KDDYRFKINLSEFDSVINPFEAYAIDKFEKGDWKEAFYNCLKWFSDTPFSKRPILLGCYL CCCEEEEEEHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHH AGSLLNDVDAAITLCKIGLKANPHHVVLLNNIIYYSALAGKFEKIDHYFEQMNISTFEDL HHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHC PENDKPVIQATAGLTNFRRGKIDDGKKWYKLAIVNSEKIKNDYFKNSAILNYTRELIISR CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCHHHHHHHHHHHCC QPERFEYIETVKKMKLVNKDLIFIKESILKLNQSSEIVI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA