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The map label for this gene is xerC [H]

Identifier: 146301334

GI number: 146301334

Start: 4286593

End: 4287852

Strand: Reverse

Name: xerC [H]

Synonym: Fjoh_3592

Alternate gene names: 146301334

Gene position: 4287852-4286593 (Counterclockwise)

Preceding gene: 146301335

Following gene: 146301333

Centisome position: 70.33

GC content: 41.43

Gene sequence:

>1260_bases
ATGAAACAATTAGCAAAAACCAAAGTGACCGTGCGTCTTCGAAAAGCAGATGACCGAAAAGAATGGTATGTTTACATAGA
AAGCTATCCTGTTGAGGTTTCTGGAAGGAAAACTCCCCAGAGAATCCGTGAATATTTGAACAGAACCGTAACAACAGTGG
AGTGGGATAAGAAAAGGACTGCCCGGACAGATGCAGCGGGATCAAAGTCCTACAAACCCAAACGCAGCGATAACGGAATT
ATAATCTGCAGAAGCGAAAGCGACTGTGCAATAATGTTGTATGCTGACGGAGTACGTAAAATAAGGCAGAAAGAATACGA
TAATATTGATCTATATACTGATGCTGATAAACTGTTGGCTGAACAGAAAGAAAAAGGAAAAGAGGATTTTATTAAATATG
TTGCTGCTGTTGCTGCTAAAAGGCACAACCGAAGTTCAAAATCCATTCGCATCAATTGGGAGCGGTTGGCAGAATTTTTA
AAAAGCTTTTCAAATGGCAGCTTGAATTTTTCTCAGATTGACAGCAGAATGGCTGAAGATTTTAAACTGTTTCTGCTGGG
CGCGCCACAGGGAGGAGGCAAAAAGGGAACCATTTCCCGTAACACTGCGGGAACTTATTTTGCGATATTTAAAGCGGCTG
TAAAGCAGGCATTTATCGACGGATATCTAACAGTTGATTTATCTTCAAAAATAAAAGGCATTCCAGAGGAGGAGTCAAGA
CGTGAATATCTGACTATTGAAGAATTAAATGCACTGGCATCAACTGATTGTGAAAAAGACGTTCTCAAAAGAGCCGCGCT
TTTCTCGGCCCTCACAGGTCTGAGGCATTCTGACATTCAGAAGCTGCGCTGGAAAGAAATAGCTGTAGAAGATGGGATGG
CTAAACTGCATTTTACGCAGAAAAAGACAAAGGGTGTGGAATATATGCCTATTTCCCAGCAGGCTCTCCAGCTATGTGGA
GAGCCGAGGCTTCCCGGGCAGCTTGTTTTTGAAGATCTTCCAGACCCGTCGTGGATTTCTCGCCCTCTGAAAAAATGGGT
TCTATCGGCAGGCATTAAAAAAAATATTACCTTCCACTGCTTCCGACATACATTTGCAACACTGCAGTTATCCAGCGGTA
CAGACATTTATACGGTAAGTAAAATGCTGGGACATACCAACGTAAAAACTACTCAAATCTATGCAAAAGTGGTAGATGAG
AAGAAAAATAAAGCATCAGAAGCAATACAACTGGTATCTTTAAAGAAAAAAGAGTTATGA

Upstream 100 bases:

>100_bases
GCCATATCAGAAAATATTCAATCCCGACCAGACAAATTGGAAAGCATGTATATGCTCCAAAAAGCGAAATTGATAATTTG
TATAACGGAAATGATTTTAT

Downstream 100 bases:

>100_bases
AAACAAAGTACTTCGAATATATTGCAGTTTACCTGTCTGTATTTTTGGTGTGTGTCTTTGTCGGCATAATAGGGCGAATG
GTGCTTCTGGAAAAAGGGGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKQLAKTKVTVRLRKADDRKEWYVYIESYPVEVSGRKTPQRIREYLNRTVTTVEWDKKRTARTDAAGSKSYKPKRSDNGI
IICRSESDCAIMLYADGVRKIRQKEYDNIDLYTDADKLLAEQKEKGKEDFIKYVAAVAAKRHNRSSKSIRINWERLAEFL
KSFSNGSLNFSQIDSRMAEDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESR
REYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQKKTKGVEYMPISQQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDE
KKNKASEAIQLVSLKKKEL

Sequences:

>Translated_419_residues
MKQLAKTKVTVRLRKADDRKEWYVYIESYPVEVSGRKTPQRIREYLNRTVTTVEWDKKRTARTDAAGSKSYKPKRSDNGI
IICRSESDCAIMLYADGVRKIRQKEYDNIDLYTDADKLLAEQKEKGKEDFIKYVAAVAAKRHNRSSKSIRINWERLAEFL
KSFSNGSLNFSQIDSRMAEDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESR
REYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQKKTKGVEYMPISQQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDE
KKNKASEAIQLVSLKKKEL
>Mature_419_residues
MKQLAKTKVTVRLRKADDRKEWYVYIESYPVEVSGRKTPQRIREYLNRTVTTVEWDKKRTARTDAAGSKSYKPKRSDNGI
IICRSESDCAIMLYADGVRKIRQKEYDNIDLYTDADKLLAEQKEKGKEDFIKYVAAVAAKRHNRSSKSIRINWERLAEFL
KSFSNGSLNFSQIDSRMAEDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESR
REYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQKKTKGVEYMPISQQALQLCG
EPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDE
KKNKASEAIQLVSLKKKEL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47702; Mature: 47702

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLAKTKVTVRLRKADDRKEWYVYIESYPVEVSGRKTPQRIREYLNRTVTTVEWDKKRT
CCCHHHCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCHH
ARTDAAGSKSYKPKRSDNGIIICRSESDCAIMLYADGVRKIRQKEYDNIDLYTDADKLLA
CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCEEEECHHHHHH
EQKEKGKEDFIKYVAAVAAKRHNRSSKSIRINWERLAEFLKSFSNGSLNFSQIDSRMAED
HHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCC
FKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESR
EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCC
REYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQ
CCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEEH
KKTKGVEYMPISQQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHC
HHHCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
FRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKASEAIQLVSLKKKEL
EEHEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQLAKTKVTVRLRKADDRKEWYVYIESYPVEVSGRKTPQRIREYLNRTVTTVEWDKKRT
CCCHHHCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEEECCCHH
ARTDAAGSKSYKPKRSDNGIIICRSESDCAIMLYADGVRKIRQKEYDNIDLYTDADKLLA
CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCEEEECHHHHHH
EQKEKGKEDFIKYVAAVAAKRHNRSSKSIRINWERLAEFLKSFSNGSLNFSQIDSRMAED
HHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCC
FKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSKIKGIPEEESR
EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCC
REYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVEDGMAKLHFTQ
CCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEEH
KKTKGVEYMPISQQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHC
HHHCCCEECCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
FRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKASEAIQLVSLKKKEL
EEHEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA