| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301283
Identifier: 146301283
GI number: 146301283
Start: 4229766
End: 4230965
Strand: Reverse
Name: 146301283
Synonym: Fjoh_3541
Alternate gene names: NA
Gene position: 4230965-4229766 (Counterclockwise)
Preceding gene: 146301284
Following gene: 146301282
Centisome position: 69.4
GC content: 44.58
Gene sequence:
>1200_bases ATGAAAAAAATTGAAAAATTGTTTTTGATAATTGGGATGCTGCTTTTTCAATCCAGCGTCCAAGCTCAGGGACTGGGAGA TGAGATGCAAAGTCTTCATTCGGTATTAGAACAGCTTTACGATGAGATGATGCCTTTATGCAGCAACTTACTGGCTGTAG GGCAGGGGATAGCAGGTTTTGCAACGATCTGGTTTATCGCCTCGCGTGTGTGGCGTCACATTGCAAATGCAGAACCTATA GACTTTTATCCTCTTTTCAGGCCCTTTGTAATAGGTTTCTGCATTATGATTTTTCCATCTGTTCTGGCCCTTATCAACGG GGTTATGAAACCCACGGTAACTGCCACGGCAGCAATGGTTTCAGGTTCTAATAACGCGGTTGCTGTGCTTTTAAAGGAGA AGGAAAAAGCGATTAAAGAAACCGATCCGTGGAAGATGTATGTTGGCGTAACAGGATCGGGTGACAGGGACAGATGGTAT AAATACACGCATGATGAAGATCCCTCTGATGAAAGCATGCTGGCGGGAATCGGGAACGATGTCAAGTTTGCAATGGAAAA GGCGTCATATAACTTTAGGAATTCTGTAAAGGAGTGGTTGAGTGAGGTGCTACGAGTACTCTTTGAGGCTGCTGCCTTGT GTATTGACACACTTAGGACGTTTCAGCTTGTTGTCTTGTCAATTCTGGGGCCCCTTGTATTTGGAATAGCAGTTTTTGAC GGCTTTCAGCATACCCTCACCGTATGGCTGGCCAGGTATATCAATATTTATCTCTGGCTTCCTGTAGCCAATATTTTTGG AAGCATTATCGGAAAAATTCAGGAACTGATGCTGAAGGTTGATCTCTCGCAGGTGCAGGCTACAGGAGATACCTTTTTCA GCAGGACTGACATGTCTTATCTCATATTTATGATAATTGGAATCATCGGCTATTTTACTGTTCCGTCAGTAGCAAACTAT ATTGTACATGCTGCAGGAGGCGGAGCTTTGGGACAGAAAGTTACGAGCTTATTTGGCAGCTCTGCAAATTCGGTAGTTTC CAGAACGGCGCAAGGCGCCGGAATGGTTCTCGATGCAATGGGAGACGCAGACACAAGAATGACAAGGTGCATGGCATCTT CGGCAGGAAGCAGTCCCTACTTTAAGGAAAAGGGAAATTATATGGGCGACAAGCTCAGCGGGAATTTAAAACATACCTAA
Upstream 100 bases:
>100_bases GCATCATCAAGCGTGCTGCTTTTGCAGAGAGCAAAAGAATCAAATGATGTTTCCGCTTCCAAGCAATTTCATGAATTAAA AAACTAGGGATATGATTTCT
Downstream 100 bases:
>100_bases AAGATCCTAACTATGTTTACTAAAATGAAAAATATTGATTCGGCATTCAGATATGTCAGGGGATTTACGATGCTTGTTAT TGTCGGATGTTCAGTGATTT
Product: TraJ family protein conjugative transposon
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MKKIEKLFLIIGMLLFQSSVQAQGLGDEMQSLHSVLEQLYDEMMPLCSNLLAVGQGIAGFATIWFIASRVWRHIANAEPI DFYPLFRPFVIGFCIMIFPSVLALINGVMKPTVTATAAMVSGSNNAVAVLLKEKEKAIKETDPWKMYVGVTGSGDRDRWY KYTHDEDPSDESMLAGIGNDVKFAMEKASYNFRNSVKEWLSEVLRVLFEAAALCIDTLRTFQLVVLSILGPLVFGIAVFD GFQHTLTVWLARYINIYLWLPVANIFGSIIGKIQELMLKVDLSQVQATGDTFFSRTDMSYLIFMIIGIIGYFTVPSVANY IVHAAGGGALGQKVTSLFGSSANSVVSRTAQGAGMVLDAMGDADTRMTRCMASSAGSSPYFKEKGNYMGDKLSGNLKHT
Sequences:
>Translated_399_residues MKKIEKLFLIIGMLLFQSSVQAQGLGDEMQSLHSVLEQLYDEMMPLCSNLLAVGQGIAGFATIWFIASRVWRHIANAEPI DFYPLFRPFVIGFCIMIFPSVLALINGVMKPTVTATAAMVSGSNNAVAVLLKEKEKAIKETDPWKMYVGVTGSGDRDRWY KYTHDEDPSDESMLAGIGNDVKFAMEKASYNFRNSVKEWLSEVLRVLFEAAALCIDTLRTFQLVVLSILGPLVFGIAVFD GFQHTLTVWLARYINIYLWLPVANIFGSIIGKIQELMLKVDLSQVQATGDTFFSRTDMSYLIFMIIGIIGYFTVPSVANY IVHAAGGGALGQKVTSLFGSSANSVVSRTAQGAGMVLDAMGDADTRMTRCMASSAGSSPYFKEKGNYMGDKLSGNLKHT >Mature_399_residues MKKIEKLFLIIGMLLFQSSVQAQGLGDEMQSLHSVLEQLYDEMMPLCSNLLAVGQGIAGFATIWFIASRVWRHIANAEPI DFYPLFRPFVIGFCIMIFPSVLALINGVMKPTVTATAAMVSGSNNAVAVLLKEKEKAIKETDPWKMYVGVTGSGDRDRWY KYTHDEDPSDESMLAGIGNDVKFAMEKASYNFRNSVKEWLSEVLRVLFEAAALCIDTLRTFQLVVLSILGPLVFGIAVFD GFQHTLTVWLARYINIYLWLPVANIFGSIIGKIQELMLKVDLSQVQATGDTFFSRTDMSYLIFMIIGIIGYFTVPSVANY IVHAAGGGALGQKVTSLFGSSANSVVSRTAQGAGMVLDAMGDADTRMTRCMASSAGSSPYFKEKGNYMGDKLSGNLKHT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43848; Mature: 43848
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIEKLFLIIGMLLFQSSVQAQGLGDEMQSLHSVLEQLYDEMMPLCSNLLAVGQGIAGF CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ATIWFIASRVWRHIANAEPIDFYPLFRPFVIGFCIMIFPSVLALINGVMKPTVTATAAMV HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SGSNNAVAVLLKEKEKAIKETDPWKMYVGVTGSGDRDRWYKYTHDEDPSDESMLAGIGND CCCCCEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCH VKFAMEKASYNFRNSVKEWLSEVLRVLFEAAALCIDTLRTFQLVVLSILGPLVFGIAVFD HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFQHTLTVWLARYINIYLWLPVANIFGSIIGKIQELMLKVDLSQVQATGDTFFSRTDMSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIFMIIGIIGYFTVPSVANYIVHAAGGGALGQKVTSLFGSSANSVVSRTAQGAGMVLDAM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECC GDADTRMTRCMASSAGSSPYFKEKGNYMGDKLSGNLKHT CCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKIEKLFLIIGMLLFQSSVQAQGLGDEMQSLHSVLEQLYDEMMPLCSNLLAVGQGIAGF CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ATIWFIASRVWRHIANAEPIDFYPLFRPFVIGFCIMIFPSVLALINGVMKPTVTATAAMV HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH SGSNNAVAVLLKEKEKAIKETDPWKMYVGVTGSGDRDRWYKYTHDEDPSDESMLAGIGND CCCCCEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCH VKFAMEKASYNFRNSVKEWLSEVLRVLFEAAALCIDTLRTFQLVVLSILGPLVFGIAVFD HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFQHTLTVWLARYINIYLWLPVANIFGSIIGKIQELMLKVDLSQVQATGDTFFSRTDMSY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIFMIIGIIGYFTVPSVANYIVHAAGGGALGQKVTSLFGSSANSVVSRTAQGAGMVLDAM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECC GDADTRMTRCMASSAGSSPYFKEKGNYMGDKLSGNLKHT CCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA