| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301281
Identifier: 146301281
GI number: 146301281
Start: 4227569
End: 4228858
Strand: Reverse
Name: 146301281
Synonym: Fjoh_3539
Alternate gene names: NA
Gene position: 4228858-4227569 (Counterclockwise)
Preceding gene: 146301282
Following gene: 146301280
Centisome position: 69.36
GC content: 39.15
Gene sequence:
>1290_bases ATGGAAACAAAAACTTTATCGATAAAAGAAGTAAAAAAAAGAAAAATGCTTTTGGTTCTGCCTTTAATAACACTTCCATT CATAACACTACTGTTTTACGTTCTGGGAGGCGGCAGAATGGAAGCGGCAGTATCTTCAAGCGAACATAAAAAAGGGTTTA ATTTTAATCTGCCCATGCCAAAATTTAAAGAAGATTCTGCCCTTGATAAAATGAGTTATTATGAAGAGGCGGCCACCGAT TCATTAAAGCTTTTGGAACAGATTAAAAAAGATCCAAATTATTCCAAGAGTGCGATTTCAAATGACCTCGATGATGAATT TACGGCAGAAGATTTTGAGAAGCACCTATTTTCAAAAGGCATTAAAGGATTCAATTCAGCTCCGCTTGAACAGGGAAAGG AAGAGAAAGTATACGAAAAAATAAAAGCTCTTCAAAAGATAATCAGACAGCCTGTAACTGCGGACAGCTATGGGCAGGAC ATGAGTGAATTTGAATCGTATGGCAGATCAAAAGAAAGTTCCCAAGAGATAAAAAAACTCGAGCAGATGATGGCATCCAT GGGAACTGTACAGGAACCTGATCCAGAACTGCAGCAGCTTGGCGGAATGCTTGAAAATATACTGGATATTCAGCATCCGC AGCGTGTACAGGAAAGATTAAAACAGTCCTCTGAAAGTAAAAAAGGAAAAGTTTTTACTGTTGACCCTAATATAGAAATT GATATATCCACGTCATTACAGAAGACCTCAAGCATCATAGACAATTCAAAAAGTAATTCATTCTATTCCGCAGATGAGAG CGCAGAACTTGACAGCCAGCCGAATGCTATTCAGGCTGTAATTCATGAGACGCAGATCATTGTGAACGGATCAATTGTAA AACTAAGGCTAAGCAATGATATTAATCTGCAGGGAACTGTGATTCCTAAGAATACATTCTTGTATGGAACGGCATCGCTG AAAGGGGAGAGGCTCGAAGTAAAGGTGGATAATATCCAGTTTAGAAATTCTATTTTCCCAGTTGAACTGACAATATATGA TCTGGATGGCATTAGTGGAATTTATATTCCGGGTGCTATAAACAGGGATGTCGCTAAAGCCTCTGCCGAAAGGTCGATAC AGACTTTGGGTCTAACGGGAATTTCAGATTCGTGGGGTGCGCAGGCTGCCGGTATGGGAGTTGAGGCGGCAAAAAGTCTT ATAAGTAAAAAGGTCAAGCTCATTAAAGTAGTGCTAAAAGCAGGCTATCAGGTACTGCTTTATGATGAGAAACAAAAGAA TTTGAAGTAA
Upstream 100 bases:
>100_bases ATTTATAATATCTGCAGGAGCGTATTTGCAGAGCGCTTTCCAGCTAAATATAGACCTGAAGTTTCTAAGGTTTTGCCAAT TAATCAAAAAAAAATGAATT
Downstream 100 bases:
>100_bases CTAAAAGAATTTAAAGATGAAAAAATATAACTTGATCTATTTTATCAGTTTCTCCTTTTTAGCAATATCAAGCTTCGCGC AGTTGAATAATAGAAAGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues METKTLSIKEVKKRKMLLVLPLITLPFITLLFYVLGGGRMEAAVSSSEHKKGFNFNLPMPKFKEDSALDKMSYYEEAATD SLKLLEQIKKDPNYSKSAISNDLDDEFTAEDFEKHLFSKGIKGFNSAPLEQGKEEKVYEKIKALQKIIRQPVTADSYGQD MSEFESYGRSKESSQEIKKLEQMMASMGTVQEPDPELQQLGGMLENILDIQHPQRVQERLKQSSESKKGKVFTVDPNIEI DISTSLQKTSSIIDNSKSNSFYSADESAELDSQPNAIQAVIHETQIIVNGSIVKLRLSNDINLQGTVIPKNTFLYGTASL KGERLEVKVDNIQFRNSIFPVELTIYDLDGISGIYIPGAINRDVAKASAERSIQTLGLTGISDSWGAQAAGMGVEAAKSL ISKKVKLIKVVLKAGYQVLLYDEKQKNLK
Sequences:
>Translated_429_residues METKTLSIKEVKKRKMLLVLPLITLPFITLLFYVLGGGRMEAAVSSSEHKKGFNFNLPMPKFKEDSALDKMSYYEEAATD SLKLLEQIKKDPNYSKSAISNDLDDEFTAEDFEKHLFSKGIKGFNSAPLEQGKEEKVYEKIKALQKIIRQPVTADSYGQD MSEFESYGRSKESSQEIKKLEQMMASMGTVQEPDPELQQLGGMLENILDIQHPQRVQERLKQSSESKKGKVFTVDPNIEI DISTSLQKTSSIIDNSKSNSFYSADESAELDSQPNAIQAVIHETQIIVNGSIVKLRLSNDINLQGTVIPKNTFLYGTASL KGERLEVKVDNIQFRNSIFPVELTIYDLDGISGIYIPGAINRDVAKASAERSIQTLGLTGISDSWGAQAAGMGVEAAKSL ISKKVKLIKVVLKAGYQVLLYDEKQKNLK >Mature_429_residues METKTLSIKEVKKRKMLLVLPLITLPFITLLFYVLGGGRMEAAVSSSEHKKGFNFNLPMPKFKEDSALDKMSYYEEAATD SLKLLEQIKKDPNYSKSAISNDLDDEFTAEDFEKHLFSKGIKGFNSAPLEQGKEEKVYEKIKALQKIIRQPVTADSYGQD MSEFESYGRSKESSQEIKKLEQMMASMGTVQEPDPELQQLGGMLENILDIQHPQRVQERLKQSSESKKGKVFTVDPNIEI DISTSLQKTSSIIDNSKSNSFYSADESAELDSQPNAIQAVIHETQIIVNGSIVKLRLSNDINLQGTVIPKNTFLYGTASL KGERLEVKVDNIQFRNSIFPVELTIYDLDGISGIYIPGAINRDVAKASAERSIQTLGLTGISDSWGAQAAGMGVEAAKSL ISKKVKLIKVVLKAGYQVLLYDEKQKNLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47767; Mature: 47767
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METKTLSIKEVKKRKMLLVLPLITLPFITLLFYVLGGGRMEAAVSSSEHKKGFNFNLPMP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCCCCCCCC KFKEDSALDKMSYYEEAATDSLKLLEQIKKDPNYSKSAISNDLDDEFTAEDFEKHLFSKG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHH IKGFNSAPLEQGKEEKVYEKIKALQKIIRQPVTADSYGQDMSEFESYGRSKESSQEIKKL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH EQMMASMGTVQEPDPELQQLGGMLENILDIQHPQRVQERLKQSSESKKGKVFTVDPNIEI HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCEEE DISTSLQKTSSIIDNSKSNSFYSADESAELDSQPNAIQAVIHETQIIVNGSIVKLRLSND EECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCEEEEEECCC INLQGTVIPKNTFLYGTASLKGERLEVKVDNIQFRNSIFPVELTIYDLDGISGIYIPGAI CCEEEEEEECCEEEEEECCCCCCEEEEEECCEEECCCEEEEEEEEEECCCCCEEEECCCC NRDVAKASAERSIQTLGLTGISDSWGAQAAGMGVEAAKSLISKKVKLIKVVLKAGYQVLL CHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE YDEKQKNLK EECHHCCCC >Mature Secondary Structure METKTLSIKEVKKRKMLLVLPLITLPFITLLFYVLGGGRMEAAVSSSEHKKGFNFNLPMP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCCCCCCCC KFKEDSALDKMSYYEEAATDSLKLLEQIKKDPNYSKSAISNDLDDEFTAEDFEKHLFSKG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHH IKGFNSAPLEQGKEEKVYEKIKALQKIIRQPVTADSYGQDMSEFESYGRSKESSQEIKKL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHH EQMMASMGTVQEPDPELQQLGGMLENILDIQHPQRVQERLKQSSESKKGKVFTVDPNIEI HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCEEE DISTSLQKTSSIIDNSKSNSFYSADESAELDSQPNAIQAVIHETQIIVNGSIVKLRLSND EECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCEEEEEECCC INLQGTVIPKNTFLYGTASLKGERLEVKVDNIQFRNSIFPVELTIYDLDGISGIYIPGAI CCEEEEEEECCEEEEEECCCCCCEEEEEECCEEECCCEEEEEEEEEECCCCCEEEECCCC NRDVAKASAERSIQTLGLTGISDSWGAQAAGMGVEAAKSLISKKVKLIKVVLKAGYQVLL CHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE YDEKQKNLK EECHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA