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The map label for this gene is yggS [C]

Identifier: 146301191

GI number: 146301191

Start: 4116102

End: 4116761

Strand: Direct

Name: yggS [C]

Synonym: Fjoh_3449

Alternate gene names: 146301191

Gene position: 4116102-4116761 (Clockwise)

Preceding gene: 146301190

Following gene: 146301192

Centisome position: 67.51

GC content: 33.33

Gene sequence:

>660_bases
ATGTCGATTCAATCGAATTTAAATACAATTAAAGCAACTTTACCTGAACACGTAACTCTAGTTGCCGTTTCAAAAACAAA
ACCTGTTTCAGATTTGATGCAGGCTTATGAAGCTGGCCAGCGCATTTTTGGAGAAAACAAAATACAGGAAATGACTGAGA
AATGGGAACAAATGCCAAAAGACATTCAATGGCATATGATAGGTCATGTTCAGTCGAATAAGGTCAAATTTATGGCTCCT
TATGTAACTTTGATTCATGGTGTTGACAGTTTGAAATTATTACAGGAAATCAATAAACAAGCTTTAAAAAATAACAGAAC
AATAGATTGCCTTCTTCAAATATATATTGCTGAAGAAGAATCTAAATTTGGTCTAGACGAAAACGAATTAAATGAACTTT
TAACTTCTGTGGAGTTTAAAGAGTTAAAAAATATTCGTATCTTAGGTTTAATGGGAATGGCAACATTCACAGAAGATCAA
AACCAGATAAAAAAAGAATTTACCCATTTAAAATCCATTTTTAATTCGATAAAAAATCTGAAAACTGAAAACTGCAGCCT
GAACACCATATCGATGGGAATGTCTGGAGATTATCAATTGGCAATAGAATGCGGAAGCACAATGGTACGCATTGGAAGCA
GCATTTTTGGAGGCAGATAA

Upstream 100 bases:

>100_bases
TGGTAAACTTGGGGTTAAATCCGGTGAAGGTTTTTACGATTACAGCGAAAGCAAAAAAGCTGAGAAAATCTCGAAACAGT
TTTTATAAAAAAGAAATATC

Downstream 100 bases:

>100_bases
TTTTTCAATATCAATGACAATTTCAAAAATCAATATCAATTAAAAAGATAAGGGTAATTTAAATGGAAAAAATATTCAAT
TTTGAAGATCGATTAGTTCG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSIQSNLNTIKATLPEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPKDIQWHMIGHVQSNKVKFMAP
YVTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEESKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQ
NQIKKEFTHLKSIFNSIKNLKTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR

Sequences:

>Translated_219_residues
MSIQSNLNTIKATLPEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPKDIQWHMIGHVQSNKVKFMAP
YVTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEESKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQ
NQIKKEFTHLKSIFNSIKNLKTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR
>Mature_218_residues
SIQSNLNTIKATLPEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPKDIQWHMIGHVQSNKVKFMAPY
VTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEESKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQN
QIKKEFTHLKSIFNSIKNLKTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=217, Percent_Identity=40.0921658986175, Blast_Score=125, Evalue=2e-29,
Organism=Escherichia coli, GI1789321, Length=209, Percent_Identity=38.755980861244, Blast_Score=151, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17533025, Length=210, Percent_Identity=34.2857142857143, Blast_Score=98, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=36.0576923076923, Blast_Score=118, Evalue=6e-28,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=38.9671361502347, Blast_Score=132, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24834; Mature: 24703

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQSNLNTIKATLPEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPK
CCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
DIQWHMIGHVQSNKVKFMAPYVTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEE
CCEEHEEEEECCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHEEHEECCC
SKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQNQIKKEFTHLKSIFNSIKNL
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
KTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR
CCCCCCCEEEEECCCCCEEEEEECCCHHHHHCCHHCCCC
>Mature Secondary Structure 
SIQSNLNTIKATLPEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPK
CCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
DIQWHMIGHVQSNKVKFMAPYVTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEE
CCEEHEEEEECCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHEEHEECCC
SKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQNQIKKEFTHLKSIFNSIKNL
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
KTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR
CCCCCCCEEEEECCCCCEEEEEECCCHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]