| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146301144
Identifier: 146301144
GI number: 146301144
Start: 4065347
End: 4066681
Strand: Reverse
Name: 146301144
Synonym: Fjoh_3402
Alternate gene names: NA
Gene position: 4066681-4065347 (Counterclockwise)
Preceding gene: 146301145
Following gene: 146301143
Centisome position: 66.7
GC content: 33.18
Gene sequence:
>1335_bases ATGAATTATATTAACAAGAGGTTTGAATTTGTCTTAATAAAAATTAAAATTTTTTGGAGAATGAAATTCTTAAAGAATAT AAATTTTCAGCATAAATTTAAAACAGCAGTTCTGCTATCGATTACACCTTTATTTTTAACTGCACAAATTAAAACAAACC CGGAAGAAAGAGAAATATGTCCGCCCAAAACGATCTTTGAAGTCTTTAAAAAGAAAGATTCAGTTTTAGAAATCAAACCA GCAAAAAACAACTTTTTTCTCGTAATTCCTGCAATAGGATCACAGCCCGCAACCGGATTCTTTTTTGGTGCCGTAGCACA ATATACATTTAAAGGAAAACAAGAATCAGATAAATATTCTGTAGCTAATCTTGGAATTATTTATACCTTAAAAAAGCAGT GGATGATTAATGTAAAAAATAATATCCTGCTTAAAAACAACCGAATATTTTTAAGCGGAGATTATAGACTTTATATTTTT TCACAACCCAATTATGGTTTAGGAACCGATATAATTCCGCCTCGTCGGGATCGTGATCCAGGTTTTAGTATTGATTCTCT GGCTCAGGCAATGGATTATAATTATTTCAAGTTTCACCAAACCGTTTCTTTTGAAGTTAGGAAGAATTTTTATGTTGGCG GCGGTATCAATATCGATTGGTATACAGATATAAAAGATAAAGAATTAGATATTGAAAACGGAAATTTAACCTATCATTAC AATTACAGCCAAAAACACGGTTTTGATAATTTAGAATATTTTCTAACAGGTGTAAGTTTTAATCTCGTTTACGATTCTAG GGACAATCAGGTAAATTCTTCACGAGGCTGGTTTGCCAATATTAATTATAGATTTAATCCTGTATTGTTCGATAATCAAA AATACAGCAATATTTTATATGCAGAATATCGAAATTTTATTCCGGTTTCGCCAAAAAACGATCGATATATTCTCGGTATT TGGGCTTATGGCCAGTTTGTAACCAGAGGTGAAGTTCCGTATTTAAATTTGCCTGCCATTGGCTGGGATCAGCGGAGCAG GAGCGGTGAAGGTTACACGCAGGGATTATTTAGAGGAAACGGTCTCGTTTATCTTTCAACAGAATTTAGATTTCCTCTTA TATGCAATCAAATGCTGAGCGGTACAGTTTTTACCAATTTTGTAACAGCCAGCAATGCAGATAATAATATCGGACTTTTT CATTCTATTCAGCCCGCAGCAGGTGTTGGACTGAGGTTGTTAATAGATAAAAAAACACGAACAAATCTTGTAGCTGATTA CGCCTGGGGAAATAATTCTAAAGGATTTTATCTCAATGCAGGAGAAGTTTTTTAA
Upstream 100 bases:
>100_bases AACAAAATAATATTGTTATAAAAAATATAATAACAAGCCGTCGGTAAATCGACGGCTTTTTTTGTTTTATAGGTAAAAGT TATTGTGTAAAGTCTTGAAA
Downstream 100 bases:
>100_bases TTGTTTTGTTTGTTAACTATTTGATTTTGTGAAAATTATGATTGTAAAATGTTAAAAATTTAGAAGAAAAACCTTAAATT TGATAACCATTTAACTTTCA
Product: surface antigen (D15)
Products: NA
Alternate protein names: Surface Antigen; OMP85 Family Outer Membrane Protein
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MNYINKRFEFVLIKIKIFWRMKFLKNINFQHKFKTAVLLSITPLFLTAQIKTNPEEREICPPKTIFEVFKKKDSVLEIKP AKNNFFLVIPAIGSQPATGFFFGAVAQYTFKGKQESDKYSVANLGIIYTLKKQWMINVKNNILLKNNRIFLSGDYRLYIF SQPNYGLGTDIIPPRRDRDPGFSIDSLAQAMDYNYFKFHQTVSFEVRKNFYVGGGINIDWYTDIKDKELDIENGNLTYHY NYSQKHGFDNLEYFLTGVSFNLVYDSRDNQVNSSRGWFANINYRFNPVLFDNQKYSNILYAEYRNFIPVSPKNDRYILGI WAYGQFVTRGEVPYLNLPAIGWDQRSRSGEGYTQGLFRGNGLVYLSTEFRFPLICNQMLSGTVFTNFVTASNADNNIGLF HSIQPAAGVGLRLLIDKKTRTNLVADYAWGNNSKGFYLNAGEVF
Sequences:
>Translated_444_residues MNYINKRFEFVLIKIKIFWRMKFLKNINFQHKFKTAVLLSITPLFLTAQIKTNPEEREICPPKTIFEVFKKKDSVLEIKP AKNNFFLVIPAIGSQPATGFFFGAVAQYTFKGKQESDKYSVANLGIIYTLKKQWMINVKNNILLKNNRIFLSGDYRLYIF SQPNYGLGTDIIPPRRDRDPGFSIDSLAQAMDYNYFKFHQTVSFEVRKNFYVGGGINIDWYTDIKDKELDIENGNLTYHY NYSQKHGFDNLEYFLTGVSFNLVYDSRDNQVNSSRGWFANINYRFNPVLFDNQKYSNILYAEYRNFIPVSPKNDRYILGI WAYGQFVTRGEVPYLNLPAIGWDQRSRSGEGYTQGLFRGNGLVYLSTEFRFPLICNQMLSGTVFTNFVTASNADNNIGLF HSIQPAAGVGLRLLIDKKTRTNLVADYAWGNNSKGFYLNAGEVF >Mature_444_residues MNYINKRFEFVLIKIKIFWRMKFLKNINFQHKFKTAVLLSITPLFLTAQIKTNPEEREICPPKTIFEVFKKKDSVLEIKP AKNNFFLVIPAIGSQPATGFFFGAVAQYTFKGKQESDKYSVANLGIIYTLKKQWMINVKNNILLKNNRIFLSGDYRLYIF SQPNYGLGTDIIPPRRDRDPGFSIDSLAQAMDYNYFKFHQTVSFEVRKNFYVGGGINIDWYTDIKDKELDIENGNLTYHY NYSQKHGFDNLEYFLTGVSFNLVYDSRDNQVNSSRGWFANINYRFNPVLFDNQKYSNILYAEYRNFIPVSPKNDRYILGI WAYGQFVTRGEVPYLNLPAIGWDQRSRSGEGYTQGLFRGNGLVYLSTEFRFPLICNQMLSGTVFTNFVTASNADNNIGLF HSIQPAAGVGLRLLIDKKTRTNLVADYAWGNNSKGFYLNAGEVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51381; Mature: 51381
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYINKRFEFVLIKIKIFWRMKFLKNINFQHKFKTAVLLSITPLFLTAQIKTNPEEREIC CCCCCCEEEEEEEEEEEEEEEHHHHCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCC PPKTIFEVFKKKDSVLEIKPAKNNFFLVIPAIGSQPATGFFFGAVAQYTFKGKQESDKYS CHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEHHHEEEEECCCCCCCCEE VANLGIIYTLKKQWMINVKNNILLKNNRIFLSGDYRLYIFSQPNYGLGTDIIPPRRDRDP EEEEEEEEEEEEEEEEEECCCEEEECCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCC GFSIDSLAQAMDYNYFKFHQTVSFEVRKNFYVGGGINIDWYTDIKDKELDIENGNLTYHY CCCHHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCEEEEECCCEEEEE NYSQKHGFDNLEYFLTGVSFNLVYDSRDNQVNSSRGWFANINYRFNPVLFDNQKYSNILY ECHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEE AEYRNFIPVSPKNDRYILGIWAYGQFVTRGEVPYLNLPAIGWDQRSRSGEGYTQGLFRGN EHHCCCCCCCCCCCCEEEEEEEECEEEECCCCCEEECCCCCCCCCCCCCCCCEEHEEECC GLVYLSTEFRFPLICNQMLSGTVFTNFVTASNADNNIGLFHSIQPAAGVGLRLLIDKKTR CEEEEEECCCCHHHHHHHHCCEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCC TNLVADYAWGNNSKGFYLNAGEVF CCEEEEEECCCCCCCEEEECCCCC >Mature Secondary Structure MNYINKRFEFVLIKIKIFWRMKFLKNINFQHKFKTAVLLSITPLFLTAQIKTNPEEREIC CCCCCCEEEEEEEEEEEEEEEHHHHCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCC PPKTIFEVFKKKDSVLEIKPAKNNFFLVIPAIGSQPATGFFFGAVAQYTFKGKQESDKYS CHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEHHHEEEEECCCCCCCCEE VANLGIIYTLKKQWMINVKNNILLKNNRIFLSGDYRLYIFSQPNYGLGTDIIPPRRDRDP EEEEEEEEEEEEEEEEEECCCEEEECCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCC GFSIDSLAQAMDYNYFKFHQTVSFEVRKNFYVGGGINIDWYTDIKDKELDIENGNLTYHY CCCHHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCEEEEECCCEEEEE NYSQKHGFDNLEYFLTGVSFNLVYDSRDNQVNSSRGWFANINYRFNPVLFDNQKYSNILY ECHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEE AEYRNFIPVSPKNDRYILGIWAYGQFVTRGEVPYLNLPAIGWDQRSRSGEGYTQGLFRGN EHHCCCCCCCCCCCCEEEEEEEECEEEECCCCCEEECCCCCCCCCCCCCCCCEEHEEECC GLVYLSTEFRFPLICNQMLSGTVFTNFVTASNADNNIGLFHSIQPAAGVGLRLLIDKKTR CEEEEEECCCCHHHHHHHHCCEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCC TNLVADYAWGNNSKGFYLNAGEVF CCEEEEEECCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA