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The map label for this gene is 146301110

Identifier: 146301110

GI number: 146301110

Start: 4027967

End: 4029049

Strand: Reverse

Name: 146301110

Synonym: Fjoh_3368

Alternate gene names: NA

Gene position: 4029049-4027967 (Counterclockwise)

Preceding gene: 146301111

Following gene: 146301109

Centisome position: 66.08

GC content: 35.64

Gene sequence:

>1083_bases
ATGAATACTGCCAGAACTCAAAAACTAATGAGCCAGCTTATTAAAACACCTCATTTGGTGCTGGAAAAGCTAGAATTAGT
TTACGTAAACAATCAAAATTTGCCTATTGAAAGATGTCAGGGAGAAGATGGTTTTATTTATAAAAAAAACGGACGCTGTA
TTAAGCAGAAAAGCGAAATAAAGCGTTTTAACAGTTTGGTTTTACCGCCGGCCTGGGTAAATGTAAAAATCACCGATTTA
TCAAACGGGCATTTGCAAGCTGTAGGTTTAGATGTTAAAAACAGAAAACAGTACAGATATCATCCAAAATGGAACTTAAT
CCGTAATCAAACCAAGTTTTACAAAATCGCAGAATTCGGACAAAAGCTTCCCTCTATACGAAAACAAGTAGATATTGATT
TAGAACAAAAAGAATGGTCGAAAGAAAAAGTAATTGCACTCGTGATCAGGTTAATGGAAGAAACCCACATCCGAATTGGA
AATGAAAAGTACGCCAAAGACAATAAATCATACGGGCTTTCGACTTTGCGAAAAAGACACATCAATATCAATAAAAATTC
CCTTCGTTTTGAATTCATCGGCAAAAAAGGAAAACAGCACACCATTACCACAAGAAACAAACAGTTGATTAAACTGGTAA
GCCGATGCGAAGAAATTCCGGGCTGGGAAGTTTTTAAATATTACGATAAAAACGGCGAAAGAAGAGTTTTAGACAGTCAC
ATGGTAAATGAATATCTGCACGCTATTTCGGGCGAATATTTTAGTGCCAAAGACTTTAGAACCTGGGCAGCCTCAATTAT
ATTCTTTGAAAATTTGATGGAACTCGGTATTGCATCAGACGAAAAAGAAATCAAAAAAAATATTATTACAGCTTATGATG
CCACTGCTGAGGCATTGGGAAACACCAGAAATGTCTGCAAAAATTATTACGTTCATCCGCTGCTGGTTTCGACATATGAA
GATGGTTCGATTGAGCCGTATTTTGATAAAGTTAAAAAGAGCCGAAGCAATAAAAAATACTTCTCAAGAAGTGAAAGCGT
ATTTGCAGAATTAATTGAAAATTATCAGGTCAGTTTGTTGTAG

Upstream 100 bases:

>100_bases
CAGATTCTCACAGATTGTGTGGGAAGAATAATGAGACAAGAAAAATCTTTTGAATCTGTGAATCCCAATAACAATTAGCA
GCAAAAAAATAAAAACGACC

Downstream 100 bases:

>100_bases
TTTGAAAAAATAGAGTTAATGCATCTTCTTAAAAAGCATGAATTTGAGTAACAAACAAAATCGTTATTAACTAAAATCTA
TTATTATGTTACGTTGGACA

Product: topoisomerase IB-like protein

Products: NA

Alternate protein names: DNA poisomerase I; DNA poisomerase Type I; DNA poisomerase IB; Type I poisomerase; DNA poisomerase I Protein; Poisomerase IB; Poisomerase IB-Like Protein; DNA poisomerase I-Like Protein; Viral-Like DNA poisomerase; DNA poisomerase ; Eukaryotic-Like DNA poisomerase I; DNA poisomerasei; -Like DNA poisomerase I; Type I DNA poisomerase

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MNTARTQKLMSQLIKTPHLVLEKLELVYVNNQNLPIERCQGEDGFIYKKNGRCIKQKSEIKRFNSLVLPPAWVNVKITDL
SNGHLQAVGLDVKNRKQYRYHPKWNLIRNQTKFYKIAEFGQKLPSIRKQVDIDLEQKEWSKEKVIALVIRLMEETHIRIG
NEKYAKDNKSYGLSTLRKRHININKNSLRFEFIGKKGKQHTITTRNKQLIKLVSRCEEIPGWEVFKYYDKNGERRVLDSH
MVNEYLHAISGEYFSAKDFRTWAASIIFFENLMELGIASDEKEIKKNIITAYDATAEALGNTRNVCKNYYVHPLLVSTYE
DGSIEPYFDKVKKSRSNKKYFSRSESVFAELIENYQVSLL

Sequences:

>Translated_360_residues
MNTARTQKLMSQLIKTPHLVLEKLELVYVNNQNLPIERCQGEDGFIYKKNGRCIKQKSEIKRFNSLVLPPAWVNVKITDL
SNGHLQAVGLDVKNRKQYRYHPKWNLIRNQTKFYKIAEFGQKLPSIRKQVDIDLEQKEWSKEKVIALVIRLMEETHIRIG
NEKYAKDNKSYGLSTLRKRHININKNSLRFEFIGKKGKQHTITTRNKQLIKLVSRCEEIPGWEVFKYYDKNGERRVLDSH
MVNEYLHAISGEYFSAKDFRTWAASIIFFENLMELGIASDEKEIKKNIITAYDATAEALGNTRNVCKNYYVHPLLVSTYE
DGSIEPYFDKVKKSRSNKKYFSRSESVFAELIENYQVSLL
>Mature_360_residues
MNTARTQKLMSQLIKTPHLVLEKLELVYVNNQNLPIERCQGEDGFIYKKNGRCIKQKSEIKRFNSLVLPPAWVNVKITDL
SNGHLQAVGLDVKNRKQYRYHPKWNLIRNQTKFYKIAEFGQKLPSIRKQVDIDLEQKEWSKEKVIALVIRLMEETHIRIG
NEKYAKDNKSYGLSTLRKRHININKNSLRFEFIGKKGKQHTITTRNKQLIKLVSRCEEIPGWEVFKYYDKNGERRVLDSH
MVNEYLHAISGEYFSAKDFRTWAASIIFFENLMELGIASDEKEIKKNIITAYDATAEALGNTRNVCKNYYVHPLLVSTYE
DGSIEPYFDKVKKSRSNKKYFSRSESVFAELIENYQVSLL

Specific function: Unknown

COG id: COG3569

COG function: function code L; Topoisomerase IB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42214; Mature: 42214

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTARTQKLMSQLIKTPHLVLEKLELVYVNNQNLPIERCQGEDGFIYKKNGRCIKQKSEI
CCHHHHHHHHHHHHCCHHHHHHCEEEEEECCCCCCHHHCCCCCCEEECCCCCEEHHHHHH
KRFNSLVLPPAWVNVKITDLSNGHLQAVGLDVKNRKQYRYHPKWNLIRNQTKFYKIAEFG
HHHHCEECCCCEEEEEEEECCCCEEEEEECCCCCCCCEEECCCHHHHHCCHHHHHHHHHH
QKLPSIRKQVDIDLEQKEWSKEKVIALVIRLMEETHIRIGNEKYAKDNKSYGLSTLRKRH
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHH
ININKNSLRFEFIGKKGKQHTITTRNKQLIKLVSRCEEIPGWEVFKYYDKNGERRVLDSH
CCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHH
MVNEYLHAISGEYFSAKDFRTWAASIIFFENLMELGIASDEKEIKKNIITAYDATAEALG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
NTRNVCKNYYVHPLLVSTYEDGSIEPYFDKVKKSRSNKKYFSRSESVFAELIENYQVSLL
CHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MNTARTQKLMSQLIKTPHLVLEKLELVYVNNQNLPIERCQGEDGFIYKKNGRCIKQKSEI
CCHHHHHHHHHHHHCCHHHHHHCEEEEEECCCCCCHHHCCCCCCEEECCCCCEEHHHHHH
KRFNSLVLPPAWVNVKITDLSNGHLQAVGLDVKNRKQYRYHPKWNLIRNQTKFYKIAEFG
HHHHCEECCCCEEEEEEEECCCCEEEEEECCCCCCCCEEECCCHHHHHCCHHHHHHHHHH
QKLPSIRKQVDIDLEQKEWSKEKVIALVIRLMEETHIRIGNEKYAKDNKSYGLSTLRKRH
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHH
ININKNSLRFEFIGKKGKQHTITTRNKQLIKLVSRCEEIPGWEVFKYYDKNGERRVLDSH
CCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHH
MVNEYLHAISGEYFSAKDFRTWAASIIFFENLMELGIASDEKEIKKNIITAYDATAEALG
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
NTRNVCKNYYVHPLLVSTYEDGSIEPYFDKVKKSRSNKKYFSRSESVFAELIENYQVSLL
CHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA