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The map label for this gene is aphA [H]

Identifier: 146301097

GI number: 146301097

Start: 4014690

End: 4015907

Strand: Reverse

Name: aphA [H]

Synonym: Fjoh_3355

Alternate gene names: 146301097

Gene position: 4015907-4014690 (Counterclockwise)

Preceding gene: 146301100

Following gene: 146301096

Centisome position: 65.87

GC content: 33.99

Gene sequence:

>1218_bases
ATGGTATTAATTGTAGATGATATCAAGGCAAATATTATTGCCTTAAAGAAAACATTAGAATTGCACGACATTGACGTAGA
TACTGCCGAATCTGGAGAAGAAGCGCTGAAAAAAATATTAAAAACAAACTACTGTCTTATTATTATGGACGTACAAATGC
CGGGACTTGACGGCTTTGAAGTAGTTAAAATTCTCTCAGGTAATAAACGAACAAAAGATATTCCTGTAATTTTTCTTTCA
GCTTTAAATATTGAAAAGAAATACATTTTTAAAGGATATGAAACCGGAGCCGTAGAATATATTACAAAACCGGTTGATAC
TGATTTGCTGATGCTTAAAGTAAAGACTTTCCTTAAAATTTACGAACAGCAGAACGAACTAAAACTTACCAAAGAACTTC
TTTCTAAAGAAATCAAAATTAGAAAAGAAGCACAAGACAATCTCGAAATCAAAATCGCCGAAAGAACCAAAGAACTGGTT
TTAAAAAACGAAGAATTAGAGATGAAAAACCACGAATTGCAGCAGTTTGCCTGGGTGGTGTCGCACGACTTAAACGAACC
TATACGGAAAATCCAGATTTTTATTAAAATAATTAAAGAACTCTATCTCAAAGAAGATGATAAGGGTATTGATTATGTCA
ACCGAACAATAAAATCAGCAGAGAGAATGCAGACTTTAATTACAGATCTTCTGGCTTATTCTCGTTTATCTGCACAGGTT
AAACCTGAAGTTACAGATTTAAATATCGTTTTGCAGGAAGTCCTTTCTGATTTTGATTATTTAATTGAAAGAAAAAATGC
AACTGTAAAAACAACCGAACTTCCAACCATAGATAGTATTCCAAGCCAGCTAAGACAGGTGTTTCAGAATCTTATAGGAA
ATGCACTCAAATTCTCCGGAGCAAATGAACCTCCATTCATCGAAATAACTTCAGAATTAATTGTCGACAAATCGTTTGAC
AGCCCGACTTCTCCGGAAGGTAAATACTGCAGGATTATTGTAAAAGACAACGGAATTGGCTTTGATGAAATTTATCTCGA
CAGGATTTTTATCATTTTTCAAAGCTTAAACGACCGTCAGACTTATGAAGGAACCGGAATTGGTCTTGCAATTGCAAAAA
AAATCATCGAAAAACACAACGGATTAATAACCGCAAGGAGTGAAGTAGGCAAAGGCGCGAGCTTTATAATTATTCTTCCT
TTAAAATACGAAAAATAA

Upstream 100 bases:

>100_bases
ATTTGAAAGTTTTGACTGCTTTTTGAATAGGATCAGATGTTCAAAATAATAAGTAGTAAATAATTTTTTAATTCATAAAC
GCTTTATCCCCCATAACGGC

Downstream 100 bases:

>100_bases
AATAATCTAGAATATATGAATGGTAACTTTAAAAGAAATCTGCTTATAAGTTCATTGGTTTCGCTGTTTGTACTTACTAT
TAGCTCTGTAGCTTCATTTA

Product: response regulator receiver sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MVLIVDDIKANIIALKKTLELHDIDVDTAESGEEALKKILKTNYCLIIMDVQMPGLDGFEVVKILSGNKRTKDIPVIFLS
ALNIEKKYIFKGYETGAVEYITKPVDTDLLMLKVKTFLKIYEQQNELKLTKELLSKEIKIRKEAQDNLEIKIAERTKELV
LKNEELEMKNHELQQFAWVVSHDLNEPIRKIQIFIKIIKELYLKEDDKGIDYVNRTIKSAERMQTLITDLLAYSRLSAQV
KPEVTDLNIVLQEVLSDFDYLIERKNATVKTTELPTIDSIPSQLRQVFQNLIGNALKFSGANEPPFIEITSELIVDKSFD
SPTSPEGKYCRIIVKDNGIGFDEIYLDRIFIIFQSLNDRQTYEGTGIGLAIAKKIIEKHNGLITARSEVGKGASFIIILP
LKYEK

Sequences:

>Translated_405_residues
MVLIVDDIKANIIALKKTLELHDIDVDTAESGEEALKKILKTNYCLIIMDVQMPGLDGFEVVKILSGNKRTKDIPVIFLS
ALNIEKKYIFKGYETGAVEYITKPVDTDLLMLKVKTFLKIYEQQNELKLTKELLSKEIKIRKEAQDNLEIKIAERTKELV
LKNEELEMKNHELQQFAWVVSHDLNEPIRKIQIFIKIIKELYLKEDDKGIDYVNRTIKSAERMQTLITDLLAYSRLSAQV
KPEVTDLNIVLQEVLSDFDYLIERKNATVKTTELPTIDSIPSQLRQVFQNLIGNALKFSGANEPPFIEITSELIVDKSFD
SPTSPEGKYCRIIVKDNGIGFDEIYLDRIFIIFQSLNDRQTYEGTGIGLAIAKKIIEKHNGLITARSEVGKGASFIIILP
LKYEK
>Mature_405_residues
MVLIVDDIKANIIALKKTLELHDIDVDTAESGEEALKKILKTNYCLIIMDVQMPGLDGFEVVKILSGNKRTKDIPVIFLS
ALNIEKKYIFKGYETGAVEYITKPVDTDLLMLKVKTFLKIYEQQNELKLTKELLSKEIKIRKEAQDNLEIKIAERTKELV
LKNEELEMKNHELQQFAWVVSHDLNEPIRKIQIFIKIIKELYLKEDDKGIDYVNRTIKSAERMQTLITDLLAYSRLSAQV
KPEVTDLNIVLQEVLSDFDYLIERKNATVKTTELPTIDSIPSQLRQVFQNLIGNALKFSGANEPPFIEITSELIVDKSFD
SPTSPEGKYCRIIVKDNGIGFDEIYLDRIFIIFQSLNDRQTYEGTGIGLAIAKKIIEKHNGLITARSEVGKGASFIIILP
LKYEK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI145693157, Length=262, Percent_Identity=27.8625954198473, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=27.9352226720648, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI48994928, Length=246, Percent_Identity=25.2032520325203, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788713, Length=240, Percent_Identity=22.9166666666667, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789149, Length=274, Percent_Identity=24.8175182481752, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790346, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082012, Length=137, Percent_Identity=29.1970802919708, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786600, Length=289, Percent_Identity=25.2595155709343, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788549, Length=232, Percent_Identity=26.7241379310345, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87081816, Length=277, Percent_Identity=23.826714801444, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 46271; Mature: 46271

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIVDDIKANIIALKKTLELHDIDVDTAESGEEALKKILKTNYCLIIMDVQMPGLDGFE
CEEEEECCCCCEEEEEHHHEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHH
VVKILSGNKRTKDIPVIFLSALNIEKKYIFKGYETGAVEYITKPVDTDLLMLKVKTFLKI
HHHHHCCCCCCCCCCEEEEEECCCCHHHEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
YEQQNELKLTKELLSKEIKIRKEAQDNLEIKIAERTKELVLKNEELEMKNHELQQFAWVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SHDLNEPIRKIQIFIKIIKELYLKEDDKGIDYVNRTIKSAERMQTLITDLLAYSRLSAQV
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KPEVTDLNIVLQEVLSDFDYLIERKNATVKTTELPTIDSIPSQLRQVFQNLIGNALKFSG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEECCC
ANEPPFIEITSELIVDKSFDSPTSPEGKYCRIIVKDNGIGFDEIYLDRIFIIFQSLNDRQ
CCCCCEEEEEHHHHEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
TYEGTGIGLAIAKKIIEKHNGLITARSEVGKGASFIIILPLKYEK
CCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MVLIVDDIKANIIALKKTLELHDIDVDTAESGEEALKKILKTNYCLIIMDVQMPGLDGFE
CEEEEECCCCCEEEEEHHHEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHH
VVKILSGNKRTKDIPVIFLSALNIEKKYIFKGYETGAVEYITKPVDTDLLMLKVKTFLKI
HHHHHCCCCCCCCCCEEEEEECCCCHHHEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
YEQQNELKLTKELLSKEIKIRKEAQDNLEIKIAERTKELVLKNEELEMKNHELQQFAWVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SHDLNEPIRKIQIFIKIIKELYLKEDDKGIDYVNRTIKSAERMQTLITDLLAYSRLSAQV
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KPEVTDLNIVLQEVLSDFDYLIERKNATVKTTELPTIDSIPSQLRQVFQNLIGNALKFSG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEECCC
ANEPPFIEITSELIVDKSFDSPTSPEGKYCRIIVKDNGIGFDEIYLDRIFIIFQSLNDRQ
CCCCCEEEEEHHHHEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
TYEGTGIGLAIAKKIIEKHNGLITARSEVGKGASFIIILPLKYEK
CCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]