| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301083
Identifier: 146301083
GI number: 146301083
Start: 3992543
End: 3994021
Strand: Direct
Name: 146301083
Synonym: Fjoh_3339
Alternate gene names: NA
Gene position: 3992543-3994021 (Clockwise)
Preceding gene: 146301082
Following gene: 146301084
Centisome position: 65.49
GC content: 34.55
Gene sequence:
>1479_bases ATGACTCGTATTAAGATATTCAGTATATTATTTACAGCTCTGTTATATATTTCATGTTCAAAAGATGATTATAAATTAGG TTCAGATATTGATCCTTTTTTAAGATTTAATTTTTTAGTAAAAAGTGATAACACACCTTTAGAATACCCGGCTGTAAACG GAAATCTAGTTCCTCAGTCAACTTATGACAACAAAGCGATAAGAACATTAAAAGTTCCTGTAGCTTTAACAACACGTGCC TTAAAGGGAACTGTTACAGCCAATTTTAGTGCCGAAACAAATGGTGCCAGCGACAGTTTCAGCGTAAATCCTGTAAATCA GCTTACTTTTCAAGGCAGTAAATTAACTGATACTATTTATGTGTCATTTGATAAAAGATGGGCTGCAAGTCAAAATATTA AGCTAAAATTGGAAACCGTTTCCGATCCTGATATTCATATTGGAAATCTAAATTCTGCATATCCAAACGATACTTTCAAT ATCAATTTAGGAACTATCGCTACTAATTATACTTTTCCTGTAACAAAGTACAATGTAAAAGGCGAAATAGGTGAAACAAT TGATTTTAAAGTATACTATCCTAATGGTTTTTTCCCGGAAGAAATTGAAAATGCTTCTATTTTTAAGTTCCAAAACGGAT TCGAATATTCTTTAACACATGACGATTATGGTGATAACAGAACTTCTGTAAACTATCATTTAACTCTTTTAGAAGATCTT CAAAACGATGATGCTCAATACGAGTCTAAATTAACGTTAATCAATATTCCAAATTATACGGCTACAGGAAATATCAGCTT AACTATTACAAAACCAATAAAAATACCAAGAGATATTCAGGCATATCCAGCTTCGAAATTTACAGATCCAACAAATGCCT TTTATCTAACATATGGTGAACATTGGTTTAACAATAATGGTGCTTGTTCGTGGCAGACTTTCAATGCTCTAACTTTCCCG GTTATTGTTACTAAAGACGATCCTAATGCCATATTATACAGTGATAGAGGAACTACAAACCCAAATGATGACATTTACCA CGATGCTTTTAAAATTGGCTTTAACGTTGCCAGCGGAACCAACACTGTAAACTCTTTTGGTTTAAAGAGATGGTTCTCTA ACGAAAGCAACTCAGCGTCCATTTCTCCAGGGTTCAACATTACTTCGGCATTGGAGTTTTTCCCTGCAAATGGAAACAGC AAAACTGAAGGAACGGTTCTCGTAATTCCGCAGGACATTACCATTGGATCTGCCGCAACGGCTTCAGTTCCATCAAAGTC ACATATCATTGCTATTTCCGGCGAAGGAACTTACAAAGAAATCAGCAATGGTTTATATGAAATTTCATTTGAATTGAAAC TAACAAATGACGAACTTTTTGGAGGAACAGTTTCGACACAATACAGAATGTTCAACAACAGAACATATCCAAAACCTGCT GCTTTGAGTATTCCGTGTCCTAAGGAGGTTACGCTTTAA
Upstream 100 bases:
>100_bases GGCTGTATCGCCACAGTTTGCAGTTTGACTTATCCGTCTTTAAAATACGTCCTGCCAATACCAACATACAACACTAATCT TAACCCAAACTTGCAGCAAA
Downstream 100 bases:
>100_bases GTATTTAGTCGCAGTTAACAGTCGCAGTTAACAGTCTGGAATCTTTATTCAAGCTTTGTCAAAGTTTAAAACTTTGACAA AGCTTTTGAAGTCTAAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 492; Mature: 491
Protein sequence:
>492_residues MTRIKIFSILFTALLYISCSKDDYKLGSDIDPFLRFNFLVKSDNTPLEYPAVNGNLVPQSTYDNKAIRTLKVPVALTTRA LKGTVTANFSAETNGASDSFSVNPVNQLTFQGSKLTDTIYVSFDKRWAASQNIKLKLETVSDPDIHIGNLNSAYPNDTFN INLGTIATNYTFPVTKYNVKGEIGETIDFKVYYPNGFFPEEIENASIFKFQNGFEYSLTHDDYGDNRTSVNYHLTLLEDL QNDDAQYESKLTLINIPNYTATGNISLTITKPIKIPRDIQAYPASKFTDPTNAFYLTYGEHWFNNNGACSWQTFNALTFP VIVTKDDPNAILYSDRGTTNPNDDIYHDAFKIGFNVASGTNTVNSFGLKRWFSNESNSASISPGFNITSALEFFPANGNS KTEGTVLVIPQDITIGSAATASVPSKSHIIAISGEGTYKEISNGLYEISFELKLTNDELFGGTVSTQYRMFNNRTYPKPA ALSIPCPKEVTL
Sequences:
>Translated_492_residues MTRIKIFSILFTALLYISCSKDDYKLGSDIDPFLRFNFLVKSDNTPLEYPAVNGNLVPQSTYDNKAIRTLKVPVALTTRA LKGTVTANFSAETNGASDSFSVNPVNQLTFQGSKLTDTIYVSFDKRWAASQNIKLKLETVSDPDIHIGNLNSAYPNDTFN INLGTIATNYTFPVTKYNVKGEIGETIDFKVYYPNGFFPEEIENASIFKFQNGFEYSLTHDDYGDNRTSVNYHLTLLEDL QNDDAQYESKLTLINIPNYTATGNISLTITKPIKIPRDIQAYPASKFTDPTNAFYLTYGEHWFNNNGACSWQTFNALTFP VIVTKDDPNAILYSDRGTTNPNDDIYHDAFKIGFNVASGTNTVNSFGLKRWFSNESNSASISPGFNITSALEFFPANGNS KTEGTVLVIPQDITIGSAATASVPSKSHIIAISGEGTYKEISNGLYEISFELKLTNDELFGGTVSTQYRMFNNRTYPKPA ALSIPCPKEVTL >Mature_491_residues TRIKIFSILFTALLYISCSKDDYKLGSDIDPFLRFNFLVKSDNTPLEYPAVNGNLVPQSTYDNKAIRTLKVPVALTTRAL KGTVTANFSAETNGASDSFSVNPVNQLTFQGSKLTDTIYVSFDKRWAASQNIKLKLETVSDPDIHIGNLNSAYPNDTFNI NLGTIATNYTFPVTKYNVKGEIGETIDFKVYYPNGFFPEEIENASIFKFQNGFEYSLTHDDYGDNRTSVNYHLTLLEDLQ NDDAQYESKLTLINIPNYTATGNISLTITKPIKIPRDIQAYPASKFTDPTNAFYLTYGEHWFNNNGACSWQTFNALTFPV IVTKDDPNAILYSDRGTTNPNDDIYHDAFKIGFNVASGTNTVNSFGLKRWFSNESNSASISPGFNITSALEFFPANGNSK TEGTVLVIPQDITIGSAATASVPSKSHIIAISGEGTYKEISNGLYEISFELKLTNDELFGGTVSTQYRMFNNRTYPKPAA LSIPCPKEVTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54583; Mature: 54452
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRIKIFSILFTALLYISCSKDDYKLGSDIDPFLRFNFLVKSDNTPLEYPAVNGNLVPQS CCEEEHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCC TYDNKAIRTLKVPVALTTRALKGTVTANFSAETNGASDSFSVNPVNQLTFQGSKLTDTIY CCCCCEEEEEEECEEEEEEEEEEEEEEEEECCCCCCCCCEECCCCHHEEECCCEEEEEEE VSFDKRWAASQNIKLKLETVSDPDIHIGNLNSAYPNDTFNINLGTIATNYTFPVTKYNVK EEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEEECEEEEEEEEEEEEEEEC GEIGETIDFKVYYPNGFFPEEIENASIFKFQNGFEYSLTHDDYGDNRTSVNYHLTLLEDL CCCCCEEEEEEECCCCCCHHHCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC QNDDAQYESKLTLINIPNYTATGNISLTITKPIKIPRDIQAYPASKFTDPTNAFYLTYGE CCCCCCHHCEEEEEECCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECH HWFNNNGACSWQTFNALTFPVIVTKDDPNAILYSDRGTTNPNDDIYHDAFKIGFNVASGT HEECCCCEEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCCEECEEEEEEEEECCC NTVNSFGLKRWFSNESNSASISPGFNITSALEFFPANGNSKTEGTVLVIPQDITIGSAAT CCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCEEEEEECCEEECCCCC ASVPSKSHIIAISGEGTYKEISNGLYEISFELKLTNDELFGGTVSTQYRMFNNRTYPKPA CCCCCCCEEEEEECCCCHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCC ALSIPCPKEVTL EEECCCCCCCCC >Mature Secondary Structure TRIKIFSILFTALLYISCSKDDYKLGSDIDPFLRFNFLVKSDNTPLEYPAVNGNLVPQS CEEEHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCC TYDNKAIRTLKVPVALTTRALKGTVTANFSAETNGASDSFSVNPVNQLTFQGSKLTDTIY CCCCCEEEEEEECEEEEEEEEEEEEEEEEECCCCCCCCCEECCCCHHEEECCCEEEEEEE VSFDKRWAASQNIKLKLETVSDPDIHIGNLNSAYPNDTFNINLGTIATNYTFPVTKYNVK EEECCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEEECEEEEEEEEEEEEEEEC GEIGETIDFKVYYPNGFFPEEIENASIFKFQNGFEYSLTHDDYGDNRTSVNYHLTLLEDL CCCCCEEEEEEECCCCCCHHHCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC QNDDAQYESKLTLINIPNYTATGNISLTITKPIKIPRDIQAYPASKFTDPTNAFYLTYGE CCCCCCHHCEEEEEECCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECH HWFNNNGACSWQTFNALTFPVIVTKDDPNAILYSDRGTTNPNDDIYHDAFKIGFNVASGT HEECCCCEEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCCEECEEEEEEEEECCC NTVNSFGLKRWFSNESNSASISPGFNITSALEFFPANGNSKTEGTVLVIPQDITIGSAAT CCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCCEEEEEECCEEECCCCC ASVPSKSHIIAISGEGTYKEISNGLYEISFELKLTNDELFGGTVSTQYRMFNNRTYPKPA CCCCCCCEEEEEECCCCHHHHCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCC ALSIPCPKEVTL EEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA