| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is fct [H]
Identifier: 146301075
GI number: 146301075
Start: 3979539
End: 3981839
Strand: Direct
Name: fct [H]
Synonym: Fjoh_3331
Alternate gene names: 146301075
Gene position: 3979539-3981839 (Clockwise)
Preceding gene: 146301074
Following gene: 146301076
Centisome position: 65.27
GC content: 37.77
Gene sequence:
>2301_bases ATGAAAAATATATTCTCTTTTTTACTTTTAATAAGCGGTACACATTTCATCCAGGCACAAAATAACAATAACAAAGTTAA AGACAGTATTGCAAAAGATTCTCTGGAAATGCAAACCAAACGAAATGAATTGCAGACCGTTGAAATTGTAGGCCGTTCGA CCAAGAAATACAACAGCGATTATTCGTTTGCAGCAACTAAAATTGCCGCTTTAAACAAAGATATTCCGCAGTCTATTTCT ACAATTACCAAAGAATTAATTGCTGACAAAGGTGCTTTTTATCTGGCCGATGCAGTAAAAATGTCGAGCGGTGTAATTCC GGCTAGTTATTATAATCAATATACAATTCGCGGTATCAGCCAGAATGAAGAAGGCCAGATAATTAACGGAATGCGAACAC GCCAGTATTATTTTTTACAGCCTTTAACTAGTAATATTGAACGTGTTGAAGTGATAAAAGGTCCCTCGAGTGCCACATTT TCTTCTGTTGATCCGGGCGGAAGTATCAATATGGTGACCAAAAAACCTTTGGCAATAGACCGAAAAGAAATCAGCATGAG CGTGGGGAGTTTCAGCACTTTGCGCGGAACACTTGATTTTACCGGACCTTTAAACGAATCAAAAACACTTTTATATCGTG TAAACGGTGCCTATCAGCAGGCAAAATCATTTCGGGATTTAGTTAATAATAAATCGTTTTTGATCTCGCCTTCTTTCAGT TATATCCCAAATGAAAAAACGGCCATTAACACCGAGTTAATTTTAAGTGACATGACGGGAATTCTGGATCGCGGACAGCC TATTTTTGGTGCTGTCGCCGGAAAAACAAGTTTAAATAAAACACCAATAAGTTTAAATCTGGGCGCTCCAAGTGATTTTT TTAAATCGAAGGAAATGATCCTGATGACCAATTTTGCGCATAAATTCAATTCTAAAATTGGTTTTAATGCGTCGTATATG AAACAAACCTGGACAGAAGATCTTCAGGAACACCGAACTACAAATGCTTTTGCGGTTGACATGAACAATCAGCCGGTTAC GAGTCTGGCTATGATGCAGTTTGTACAGCGTCAGCAAAACTGGGATATCGACAATTTGAGTGCATATTTAAACTTCGATT TAAAAACCGGAAAACTCCATCATAAATTACTGACAGGTTATGATTTAAGCAGCTGGAACAAAAATAAAGGCGGCGGACAA AACGCGGCGCGAGGTTATCTGTTGAAAGACGGAACTGTTGCGAGCAGTTTTGTTTTAGCAAATGCATCAAATTATCAAAC CGTAACCGTTGACGGCGTTGTAATGCCAAAACCAAATGTTGATTATTTTAATTTGAATAATCCAATTTACAGACTGACCA GTCCTGAAGATTATACACTGAATGTGAGAACAGCGCTTCCATCAGCATTAACTACTACAAATGCCATTTATATTCAGGAT CAGATTCAATGGGAAAAGTTTACTTTTTTATTGGGACTTCGAAACGAATGGTTTGAAGATATTACGAACTATGAAACCAA CAACGAACTGAAAGTCAAAAAATCGGCTTTACTGCCAAGAATTGGAATTACGTATGCCGTAAACAGTGCCATAAATGTGT ACACAACGTATCTAGAAGGTTATCAGCCTCAATCGAATACCGTTACTTTAATGCCTCAAACAGCAAGTTTACCGGGCGGC AGTTTATTTGACCCGCTGGAAAGTGATTTAAAAGAAGTAGGAATCAAAACTACTTTTTTAAACAACTCGATGAGTTTTAA TGCGGCAATTTACGAAATCAGACAGCGCAACATTTTAATGAATGCTAATGATCCCGTAAATCCTGATTTACTGGTAACGA GAGGCGGTGAACGAAGCCGTGGTTTTGAATGTGATTTAGCAGGTTATATCACACCAGACTGGCAGATTAATGCCTCGTAC AGTTATATTGATGCCGAAATTACAAAAGATAATAATCCCGCCCTAATTGGTGCCAGAAAGCAAAACACGCCAAAAAACAG TGCCAATTTATGGACGCGTTACAATTTTGCATCCGATTCTGATTTACAAGATTTTGGAATTGGAATTGGAATGCAGTATC AAAGCACTAAAGTACCTTGGTTTACAAGAGATTTTACACTTCCAGATTTTACCATTTTTGATGCTGCTTTGTTTTACAAA CCAAATAAAAGCAATGTGCAGATTGCTGTAAATGCGGGAAATTTATTAAACAAAACGTATTGGCTGGGCGCTCAGAATTA TCTGCGTTTATTTCCGGGAAGTCCGCGAAACGTTACGCTTACGGTAACTTATAAATTTTAA
Upstream 100 bases:
>100_bases CACATCGGAATTATGAAACAGGGAAATTTAGTTACCGTTATTGAAGCTGATAAAATATCAGCAAATGAACTGGAAGATTT GTATTTACAAACTGTTTAAG
Downstream 100 bases:
>100_bases TTCGTTGAAGTGAAAAATATTTAAACACATAGAAACATAGCTGTAGATTGATTTTAAAAAAGGCGTTTCACTCGCATAAA TTCAAATAGCTATGTGTTAG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 766; Mature: 766
Protein sequence:
>766_residues MKNIFSFLLLISGTHFIQAQNNNNKVKDSIAKDSLEMQTKRNELQTVEIVGRSTKKYNSDYSFAATKIAALNKDIPQSIS TITKELIADKGAFYLADAVKMSSGVIPASYYNQYTIRGISQNEEGQIINGMRTRQYYFLQPLTSNIERVEVIKGPSSATF SSVDPGGSINMVTKKPLAIDRKEISMSVGSFSTLRGTLDFTGPLNESKTLLYRVNGAYQQAKSFRDLVNNKSFLISPSFS YIPNEKTAINTELILSDMTGILDRGQPIFGAVAGKTSLNKTPISLNLGAPSDFFKSKEMILMTNFAHKFNSKIGFNASYM KQTWTEDLQEHRTTNAFAVDMNNQPVTSLAMMQFVQRQQNWDIDNLSAYLNFDLKTGKLHHKLLTGYDLSSWNKNKGGGQ NAARGYLLKDGTVASSFVLANASNYQTVTVDGVVMPKPNVDYFNLNNPIYRLTSPEDYTLNVRTALPSALTTTNAIYIQD QIQWEKFTFLLGLRNEWFEDITNYETNNELKVKKSALLPRIGITYAVNSAINVYTTYLEGYQPQSNTVTLMPQTASLPGG SLFDPLESDLKEVGIKTTFLNNSMSFNAAIYEIRQRNILMNANDPVNPDLLVTRGGERSRGFECDLAGYITPDWQINASY SYIDAEITKDNNPALIGARKQNTPKNSANLWTRYNFASDSDLQDFGIGIGMQYQSTKVPWFTRDFTLPDFTIFDAALFYK PNKSNVQIAVNAGNLLNKTYWLGAQNYLRLFPGSPRNVTLTVTYKF
Sequences:
>Translated_766_residues MKNIFSFLLLISGTHFIQAQNNNNKVKDSIAKDSLEMQTKRNELQTVEIVGRSTKKYNSDYSFAATKIAALNKDIPQSIS TITKELIADKGAFYLADAVKMSSGVIPASYYNQYTIRGISQNEEGQIINGMRTRQYYFLQPLTSNIERVEVIKGPSSATF SSVDPGGSINMVTKKPLAIDRKEISMSVGSFSTLRGTLDFTGPLNESKTLLYRVNGAYQQAKSFRDLVNNKSFLISPSFS YIPNEKTAINTELILSDMTGILDRGQPIFGAVAGKTSLNKTPISLNLGAPSDFFKSKEMILMTNFAHKFNSKIGFNASYM KQTWTEDLQEHRTTNAFAVDMNNQPVTSLAMMQFVQRQQNWDIDNLSAYLNFDLKTGKLHHKLLTGYDLSSWNKNKGGGQ NAARGYLLKDGTVASSFVLANASNYQTVTVDGVVMPKPNVDYFNLNNPIYRLTSPEDYTLNVRTALPSALTTTNAIYIQD QIQWEKFTFLLGLRNEWFEDITNYETNNELKVKKSALLPRIGITYAVNSAINVYTTYLEGYQPQSNTVTLMPQTASLPGG SLFDPLESDLKEVGIKTTFLNNSMSFNAAIYEIRQRNILMNANDPVNPDLLVTRGGERSRGFECDLAGYITPDWQINASY SYIDAEITKDNNPALIGARKQNTPKNSANLWTRYNFASDSDLQDFGIGIGMQYQSTKVPWFTRDFTLPDFTIFDAALFYK PNKSNVQIAVNAGNLLNKTYWLGAQNYLRLFPGSPRNVTLTVTYKF >Mature_766_residues MKNIFSFLLLISGTHFIQAQNNNNKVKDSIAKDSLEMQTKRNELQTVEIVGRSTKKYNSDYSFAATKIAALNKDIPQSIS TITKELIADKGAFYLADAVKMSSGVIPASYYNQYTIRGISQNEEGQIINGMRTRQYYFLQPLTSNIERVEVIKGPSSATF SSVDPGGSINMVTKKPLAIDRKEISMSVGSFSTLRGTLDFTGPLNESKTLLYRVNGAYQQAKSFRDLVNNKSFLISPSFS YIPNEKTAINTELILSDMTGILDRGQPIFGAVAGKTSLNKTPISLNLGAPSDFFKSKEMILMTNFAHKFNSKIGFNASYM KQTWTEDLQEHRTTNAFAVDMNNQPVTSLAMMQFVQRQQNWDIDNLSAYLNFDLKTGKLHHKLLTGYDLSSWNKNKGGGQ NAARGYLLKDGTVASSFVLANASNYQTVTVDGVVMPKPNVDYFNLNNPIYRLTSPEDYTLNVRTALPSALTTTNAIYIQD QIQWEKFTFLLGLRNEWFEDITNYETNNELKVKKSALLPRIGITYAVNSAINVYTTYLEGYQPQSNTVTLMPQTASLPGG SLFDPLESDLKEVGIKTTFLNNSMSFNAAIYEIRQRNILMNANDPVNPDLLVTRGGERSRGFECDLAGYITPDWQINASY SYIDAEITKDNNPALIGARKQNTPKNSANLWTRYNFASDSDLQDFGIGIGMQYQSTKVPWFTRDFTLPDFTIFDAALFYK PNKSNVQIAVNAGNLLNKTYWLGAQNYLRLFPGSPRNVTLTVTYKF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=749, Percent_Identity=24.6995994659546, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI1787344, Length=286, Percent_Identity=24.8251748251748, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1787024, Length=257, Percent_Identity=27.2373540856031, Blast_Score=73, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85808; Mature: 85808
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIFSFLLLISGTHFIQAQNNNNKVKDSIAKDSLEMQTKRNELQTVEIVGRSTKKYNSD CHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC YSFAATKIAALNKDIPQSISTITKELIADKGAFYLADAVKMSSGVIPASYYNQYTIRGIS CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCHHHCCCEEEEECC QNEEGQIINGMRTRQYYFLQPLTSNIERVEVIKGPSSATFSSVDPGGSINMVTKKPLAID CCCCCCEECCEECCEEEEECHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEC RKEISMSVGSFSTLRGTLDFTGPLNESKTLLYRVNGAYQQAKSFRDLVNNKSFLISPSFS HHHHEEECCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCCC YIPNEKTAINTELILSDMTGILDRGQPIFGAVAGKTSLNKTPISLNLGAPSDFFKSKEMI CCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHCCCCEE LMTNFAHKFNSKIGFNASYMKQTWTEDLQEHRTTNAFAVDMNNQPVTSLAMMQFVQRQQN EEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC WDIDNLSAYLNFDLKTGKLHHKLLTGYDLSSWNKNKGGGQNAARGYLLKDGTVASSFVLA CCCCCEEEEEEEEEECCCEEEHEEECCCCCCCCCCCCCCCCHHCCEEEECCCEEEEEEEE NASNYQTVTVDGVVMPKPNVDYFNLNNPIYRLTSPEDYTLNVRTALPSALTTTNAIYIQD CCCCCEEEEEEEEEECCCCCCEEECCCCEEEECCCCCEEEEEHHHCCCHHHCCEEEEEEE QIQWEKFTFLLGLRNEWFEDITNYETNNELKVKKSALLPRIGITYAVNSAINVYTTYLEG CCCEEEEEEEEECCHHHHHHHHCCCCCCEEEEEHHHCCCCCCEEEEECCCEEEEEEEECC YQPQSNTVTLMPQTASLPGGSLFDPLESDLKEVGIKTTFLNNSMSFNAAIYEIRQRNILM CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHEEEECCCEEE NANDPVNPDLLVTRGGERSRGFECDLAGYITPDWQINASYSYIDAEITKDNNPALIGARK CCCCCCCCCEEEECCCCCCCCEEEEECCEECCCEEECCCEEEEEEEEECCCCCEEEEECC QNTPKNSANLWTRYNFASDSDLQDFGIGIGMQYQSTKVPWFTRDFTLPDFTIFDAALFYK CCCCCCCCCEEEEECCCCCCCCHHHCCEECCEECCCCCCEEEECCCCCCHHHEEEEEEEC PNKSNVQIAVNAGNLLNKTYWLGAQNYLRLFPGSPRNVTLTVTYKF CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEEEEEEEEC >Mature Secondary Structure MKNIFSFLLLISGTHFIQAQNNNNKVKDSIAKDSLEMQTKRNELQTVEIVGRSTKKYNSD CHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC YSFAATKIAALNKDIPQSISTITKELIADKGAFYLADAVKMSSGVIPASYYNQYTIRGIS CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHCCCCCCHHHCCCEEEEECC QNEEGQIINGMRTRQYYFLQPLTSNIERVEVIKGPSSATFSSVDPGGSINMVTKKPLAID CCCCCCEECCEECCEEEEECHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEC RKEISMSVGSFSTLRGTLDFTGPLNESKTLLYRVNGAYQQAKSFRDLVNNKSFLISPSFS HHHHEEECCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCCC YIPNEKTAINTELILSDMTGILDRGQPIFGAVAGKTSLNKTPISLNLGAPSDFFKSKEMI CCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHCCCCEE LMTNFAHKFNSKIGFNASYMKQTWTEDLQEHRTTNAFAVDMNNQPVTSLAMMQFVQRQQN EEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC WDIDNLSAYLNFDLKTGKLHHKLLTGYDLSSWNKNKGGGQNAARGYLLKDGTVASSFVLA CCCCCEEEEEEEEEECCCEEEHEEECCCCCCCCCCCCCCCCHHCCEEEECCCEEEEEEEE NASNYQTVTVDGVVMPKPNVDYFNLNNPIYRLTSPEDYTLNVRTALPSALTTTNAIYIQD CCCCCEEEEEEEEEECCCCCCEEECCCCEEEECCCCCEEEEEHHHCCCHHHCCEEEEEEE QIQWEKFTFLLGLRNEWFEDITNYETNNELKVKKSALLPRIGITYAVNSAINVYTTYLEG CCCEEEEEEEEECCHHHHHHHHCCCCCCEEEEEHHHCCCCCCEEEEECCCEEEEEEEECC YQPQSNTVTLMPQTASLPGGSLFDPLESDLKEVGIKTTFLNNSMSFNAAIYEIRQRNILM CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCHHHEEEECCCEEE NANDPVNPDLLVTRGGERSRGFECDLAGYITPDWQINASYSYIDAEITKDNNPALIGARK CCCCCCCCCEEEECCCCCCCCEEEEECCEECCCEEECCCEEEEEEEEECCCCCEEEEECC QNTPKNSANLWTRYNFASDSDLQDFGIGIGMQYQSTKVPWFTRDFTLPDFTIFDAALFYK CCCCCCCCCEEEEECCCCCCCCHHHCCEECCEECCCCCCEEEECCCCCCHHHEEEEEEEC PNKSNVQIAVNAGNLLNKTYWLGAQNYLRLFPGSPRNVTLTVTYKF CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]