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The map label for this gene is pchR [H]

Identifier: 146301060

GI number: 146301060

Start: 3961492

End: 3962484

Strand: Direct

Name: pchR [H]

Synonym: Fjoh_3316

Alternate gene names: 146301060

Gene position: 3961492-3962484 (Clockwise)

Preceding gene: 146301055

Following gene: 146301061

Centisome position: 64.98

GC content: 33.43

Gene sequence:

>993_bases
ATGGCATTTAAAATTGATTCTAATGACTTTGCGGATTTTCTGGAAGTGGATGAAAAGCCAGATCTGGAACTGTCCAGGAT
AGAAATTCAGGATGAAAAAGATATAAAATTTGCCACACCAAAAGGCGATATTTTATTTCATGAACATACTATTACAGATG
AATTATCTATTCTGCAGGGAAATTATCAATTGTATGACGATGTTGCTATTTCTGGTCATGGAGATTCTCCGCTGTTAGAA
ATGCACTTTAACCTTACCAATCAAAAAATTGGATATATAAATCCGGGTTCTTCTAAAGGTTATGCTTCACCAATGTCCGG
CAATATTACTTTTCTTTCAGCCGAAGACAACCATGCAAAAATCGACTTCAAAAAAGATATTATTTACAATACGTTTGATA
TTCATCTTCCTTTAAATGTGCTTACTAAATATGAGGGAGAGTCTAAAGTAATGGACAGTTTTCTCAATAATATTCAGAAA
AACAGCAGTAATGCTTTAGCTAAAAATGAAATAAAAATAAGTGCTAAAATATTCAGCGTTATAGAAGATATTAAAAACTG
TTTTTATCGAGGCCTGACTCGAAAAATCTACATGGAATCTAAAGTCTATGAACTTATTGCTTTAAGTCATCATAATTTAG
ATATCGAAAAACAATCCCGAAACTTAGCCGGCGATGATGTGGAAAAAATAAAGTTTGCAGCGCAGTTAATCCGTGAAAAT
ATTGATAATCCGTTTACAATTGTAGAACTGGCAAGAAAAGTGGGCGTGAACCAAACCAAGCTGAAAGAAGGTTTTAAAAC
TGTTTTTGGCGATACCGTTTTTGGCTATCTGCAGGAAATCAGAATGAATAAAGCCAGACATTATTTATCAGACACTTCAC
TATCAATTCAGGAAATAAGCCACCTTTCCGGTTATCAAAATGTTTCTAATTTTAGTATTGCTTTTAAAAGAATTTTCGGC
TATCCGCCTACTAAATTGAGGCTTAAGGTTTAG

Upstream 100 bases:

>100_bases
AACTTATTATAAATTATATTTGCAGTGCAAAAGTATTTGATTACCGATGGATGCATTTATGAAAGTGGAAGTTTTAATTA
TGAATTTAGAAGTATAAGGA

Downstream 100 bases:

>100_bases
TATTCCGTTTACAGTCGCAGTATTCAGTTGCAGTTTATAGTGTTTTGCTAGATATTGAAATTTAACCGCAAAGCACGCTA
AGATTTTTATCTTATTTTAC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MAFKIDSNDFADFLEVDEKPDLELSRIEIQDEKDIKFATPKGDILFHEHTITDELSILQGNYQLYDDVAISGHGDSPLLE
MHFNLTNQKIGYINPGSSKGYASPMSGNITFLSAEDNHAKIDFKKDIIYNTFDIHLPLNVLTKYEGESKVMDSFLNNIQK
NSSNALAKNEIKISAKIFSVIEDIKNCFYRGLTRKIYMESKVYELIALSHHNLDIEKQSRNLAGDDVEKIKFAAQLIREN
IDNPFTIVELARKVGVNQTKLKEGFKTVFGDTVFGYLQEIRMNKARHYLSDTSLSIQEISHLSGYQNVSNFSIAFKRIFG
YPPTKLRLKV

Sequences:

>Translated_330_residues
MAFKIDSNDFADFLEVDEKPDLELSRIEIQDEKDIKFATPKGDILFHEHTITDELSILQGNYQLYDDVAISGHGDSPLLE
MHFNLTNQKIGYINPGSSKGYASPMSGNITFLSAEDNHAKIDFKKDIIYNTFDIHLPLNVLTKYEGESKVMDSFLNNIQK
NSSNALAKNEIKISAKIFSVIEDIKNCFYRGLTRKIYMESKVYELIALSHHNLDIEKQSRNLAGDDVEKIKFAAQLIREN
IDNPFTIVELARKVGVNQTKLKEGFKTVFGDTVFGYLQEIRMNKARHYLSDTSLSIQEISHLSGYQNVSNFSIAFKRIFG
YPPTKLRLKV
>Mature_329_residues
AFKIDSNDFADFLEVDEKPDLELSRIEIQDEKDIKFATPKGDILFHEHTITDELSILQGNYQLYDDVAISGHGDSPLLEM
HFNLTNQKIGYINPGSSKGYASPMSGNITFLSAEDNHAKIDFKKDIIYNTFDIHLPLNVLTKYEGESKVMDSFLNNIQKN
SSNALAKNEIKISAKIFSVIEDIKNCFYRGLTRKIYMESKVYELIALSHHNLDIEKQSRNLAGDDVEKIKFAAQLIRENI
DNPFTIVELARKVGVNQTKLKEGFKTVFGDTVFGYLQEIRMNKARHYLSDTSLSIQEISHLSGYQNVSNFSIAFKRIFGY
PPTKLRLKV

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37637; Mature: 37506

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIDSNDFADFLEVDEKPDLELSRIEIQDEKDIKFATPKGDILFHEHTITDELSILQG
CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEECCCCCCHHHEEC
NYQLYDDVAISGHGDSPLLEMHFNLTNQKIGYINPGSSKGYASPMSGNITFLSAEDNHAK
CEEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCEE
IDFKKDIIYNTFDIHLPLNVLTKYEGESKVMDSFLNNIQKNSSNALAKNEIKISAKIFSV
EEEECCEEEEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECCCEEEHHHHHHH
IEDIKNCFYRGLTRKIYMESKVYELIALSHHNLDIEKQSRNLAGDDVEKIKFAAQLIREN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
IDNPFTIVELARKVGVNQTKLKEGFKTVFGDTVFGYLQEIRMNKARHYLSDTSLSIQEIS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
HLSGYQNVSNFSIAFKRIFGYPPTKLRLKV
HHHCCCCCHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
AFKIDSNDFADFLEVDEKPDLELSRIEIQDEKDIKFATPKGDILFHEHTITDELSILQG
EEEECCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEECCCCCCHHHEEC
NYQLYDDVAISGHGDSPLLEMHFNLTNQKIGYINPGSSKGYASPMSGNITFLSAEDNHAK
CEEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCEE
IDFKKDIIYNTFDIHLPLNVLTKYEGESKVMDSFLNNIQKNSSNALAKNEIKISAKIFSV
EEEECCEEEEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCEECCCEEEHHHHHHH
IEDIKNCFYRGLTRKIYMESKVYELIALSHHNLDIEKQSRNLAGDDVEKIKFAAQLIREN
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
IDNPFTIVELARKVGVNQTKLKEGFKTVFGDTVFGYLQEIRMNKARHYLSDTSLSIQEIS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
HLSGYQNVSNFSIAFKRIFGYPPTKLRLKV
HHHCCCCCHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]