| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300239
Identifier: 146300239
GI number: 146300239
Start: 2973703
End: 2974341
Strand: Direct
Name: 146300239
Synonym: Fjoh_2484
Alternate gene names: NA
Gene position: 2973703-2974341 (Clockwise)
Preceding gene: 146300231
Following gene: 146300240
Centisome position: 48.77
GC content: 29.73
Gene sequence:
>639_bases ATGAATGATTTAGCTCATCAAATTGAAACATTGAATATCGAACTTTTAAAACAGGTTCCACAAGAAATACTGGGAGCTTT CCAAAAATCAATTCAAGATTTGAAAAGTCTGAATATAGAAATTAATAGTTTAAAAGTTGGAGATAAAATTCCAGATTTTT CTTTAAAAAATGCAGTAAATGATACCATTACATCTGACTGTATTTTAAGGAATGGAAAAATGATAATCGCGTTTTACAGA GGAAGCTGGTGTCCTTATTGCAATTTGGAGTTAAGAACATTACAAGAAAATCTTTTGAGAATTACGGCAAAAAATACGAC TTTAGTCGCAATCTCACCGCAGAGTTCAGATAATAGTTTAACACTTAAAGAAAAACACAATTTACAGTTTGAAGTGCTTA CAGATTTACATAATGCTTATGCAAAACAGTTAGGGATTACTTTTCAGCTGCAGGATTTTGTCATACCGCATTATCAAACT CTTGGTATTAATCTTGAAGATTTTAATAAAGATCAAGAGAATACATTGCCGGTTCCTGCTGTTTTTGCAGTAAACGAAAA CGGAATTATAATTTATAAATTCCTAGATGTAAATTATATGAATAGGATTGATATTGAAGAATTAATTAACGTATTATGA
Upstream 100 bases:
>100_bases TAAAATTGACTTTTATATCCCTATGAGACAAAAATATGCGGTATTGCCAGACCTATCCGGCTTTCCGATCTTTGCAAAAA TAATCAAAAATTAAAGTAGA
Downstream 100 bases:
>100_bases AGGAAGTAAAACGTAAAGGGGCGCGATCTGCCAAAGATATTCCAGTCTCTATTTTAGAACAGCTTAATAAAGGTGAAATT GAATCAGCAAATTTGGTTGA
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Redoxin Domain-Containing Protein; Redoxin; AhpC/Tsa Family Protein; Peroxiredoxin-Like Protein; Redoxin Superfamily; Peroxiredoxin/AhpC/Tsa Family Protein; Antioxidant AhpC/TSA Family; AhpC/Tsa Family Protein Selenocysteine-Containing; Peroxiredoxin Thioredoxin-Like Fold Protein; AhpC-TSA; Alkyl Hydroperoxide Reductase; Peroxiredoxin Family Protein; Helix-Turn-Helix Fis-Type; Antioxidant AhpC/TSA Family Protein; Alkyl Hydroperoxide Reductase/Thiol Specific Antioxidant
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MNDLAHQIETLNIELLKQVPQEILGAFQKSIQDLKSLNIEINSLKVGDKIPDFSLKNAVNDTITSDCILRNGKMIIAFYR GSWCPYCNLELRTLQENLLRITAKNTTLVAISPQSSDNSLTLKEKHNLQFEVLTDLHNAYAKQLGITFQLQDFVIPHYQT LGINLEDFNKDQENTLPVPAVFAVNENGIIIYKFLDVNYMNRIDIEELINVL
Sequences:
>Translated_212_residues MNDLAHQIETLNIELLKQVPQEILGAFQKSIQDLKSLNIEINSLKVGDKIPDFSLKNAVNDTITSDCILRNGKMIIAFYR GSWCPYCNLELRTLQENLLRITAKNTTLVAISPQSSDNSLTLKEKHNLQFEVLTDLHNAYAKQLGITFQLQDFVIPHYQT LGINLEDFNKDQENTLPVPAVFAVNENGIIIYKFLDVNYMNRIDIEELINVL >Mature_212_residues MNDLAHQIETLNIELLKQVPQEILGAFQKSIQDLKSLNIEINSLKVGDKIPDFSLKNAVNDTITSDCILRNGKMIIAFYR GSWCPYCNLELRTLQENLLRITAKNTTLVAISPQSSDNSLTLKEKHNLQFEVLTDLHNAYAKQLGITFQLQDFVIPHYQT LGINLEDFNKDQENTLPVPAVFAVNENGIIIYKFLDVNYMNRIDIEELINVL
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24179; Mature: 24179
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDLAHQIETLNIELLKQVPQEILGAFQKSIQDLKSLNIEINSLKVGDKIPDFSLKNAVN CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHH DTITSDCILRNGKMIIAFYRGSWCPYCNLELRTLQENLLRITAKNTTLVAISPQSSDNSL HHHHHHHEEECCCEEEEEECCCCCCCCCCHHHHHHHHHEEEEECCEEEEEECCCCCCCEE TLKEKHNLQFEVLTDLHNAYAKQLGITFQLQDFVIPHYQTLGINLEDFNKDQENTLPVPA EEECCCCCEEEHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCHHHCCCCCCCCCCCCE VFAVNENGIIIYKFLDVNYMNRIDIEELINVL EEEECCCCEEEEEEECCCCCCCCCHHHHHHCC >Mature Secondary Structure MNDLAHQIETLNIELLKQVPQEILGAFQKSIQDLKSLNIEINSLKVGDKIPDFSLKNAVN CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHH DTITSDCILRNGKMIIAFYRGSWCPYCNLELRTLQENLLRITAKNTTLVAISPQSSDNSL HHHHHHHEEECCCEEEEEECCCCCCCCCCHHHHHHHHHEEEEECCEEEEEECCCCCCCEE TLKEKHNLQFEVLTDLHNAYAKQLGITFQLQDFVIPHYQTLGINLEDFNKDQENTLPVPA EEECCCCCEEEHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCHHHCCCCCCCCCCCCE VFAVNENGIIIYKFLDVNYMNRIDIEELINVL EEEECCCCEEEEEEECCCCCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA