| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300185
Identifier: 146300185
GI number: 146300185
Start: 2909489
End: 2912245
Strand: Direct
Name: 146300185
Synonym: Fjoh_2430
Alternate gene names: NA
Gene position: 2909489-2912245 (Clockwise)
Preceding gene: 146300183
Following gene: 146300186
Centisome position: 47.72
GC content: 33.22
Gene sequence:
>2757_bases ATGTTCTCTCAGGAATTTCCACCCATCGTAAAATATTCGCCTTCTGTTTATGGAGCCGGAAATCAGAGCTGGATGATTTC GCAGGATCATAATAATTATTTGTATTTCGCTAATAATGACGGATTGTTAGAATATAACGGAACAAGCTGGCAGTTATATC CGGGGCCAAACGAAACCATTATTCGATCTGTAAAAGTGATTGGCAATAAAGTGTATACGGGCAGTTATATGAATTTTGGT TTCTGGACGAGACAAGCAGACGGGAAGCTAAAATATACTTCGCTGAGTGACAGTATAAAAAATAAAATTTTAGATGATGA ACAGTTTTGGAATATCCTAAAATATGATCATTGGATATTGTTTCAGTCTTTAAACCGAATTTATATTTATGATACCAAAA TGATGCAGTTTAAAATAATTGCACCCAAAAATGGTGTTGTAAAATCGTTTGCTTCAACCAATGCTATTTATTTTCAGACT TTAAAAGAAGGACTTTTTGAAATAGAAAGCGGTAAAGCCAAATTAGTTTCAGATGATCCGATTTTGAAAAAATTTACCGT TGCCAATGTTTTTGCAGCAGATGAAGGCTTGATAATCCAAACACAGTTAGACGGAATACATAAACTTACGGGAAACTCAT TAAGCCGTATAGTGACAGATGTTGATGCCGAATTAAAAGCAAGTTTTGTTTACAGCAGCCAGCGTTTACAGGACGGCAGT TTTGCTTTAGGAACTGTTTCAAACGGGATTTTTATTTTGTCTGATAAAGGAAAACTGAAATATCACCTGACACAGAGCAA AGGTTTGAGCAATAATACTGCTTTATCTCTTTTTGAAGATAAAGACCAAAATTTATGGACGGGACTCGATAACGGAATAA ACTGCATCAATATGCAGTCGCCGGTGCGTAGTTTTACCGATGATTCGGGTGTTTTAGGAACCGTTTACGCATCTGCAATT CATAACGGAATGCTGTATATTGGAACCAATCAGGGATTGTTTTGCAAACCAAGTCAAAGTAATTCTGATTTTAAATTTAT AAACGGCACAAAAGGGCAGGTCTGGTCTTTAGCAGTTTATGATGATACGCTTTTCTGCGGACATGATTCGGGAACTTTTG TAGTGATAAATGATATTGCCAAAAGTATATTTTCGGCTTCAGGAACCTGGAAATTTGAACCGGTTCCGGGAAATAAAAAC CAATTACTTCAGGGAAATTATTATGGTCTATCGGTTTTAGAAAAAACAGGAAATCAGTGGGTTTTCAAAAATAAAGTACA GGGATTTGATTATTCATCGCGTTATTTTGAAATAGGTGATAATCTCGAAGTATATGTAAGTCATGAATACAAAGGGATTT TTAGATTAAAACTGGATTCGTCTTTATCAAAAACACAAGGATTCTATACGTATAAAAGTCCCGATAAAGGAAAATATGCG AGCTTAACAAAATTCAATAATTCGATTTATTACGCTTATAAAGGCGGTATTTTTAAACTAAACCCAAAAACAAAACAGTT TGTAAAAGACAATGTATTAAGCTCTATTTTTGAAAAAGACGAATATACATCGGGTAAATTAATTGTTGATAATTCAAACA AAATCTGGCTGTTTTCTAAAAACTACATTCATTATTTCTCAGCCAGTAAATTGAGCAGTCAGTTAAAAGAAAATATAATA CCAATTCCGTCTTCGCTGACCAATTCGATGTTAGGATATGAAAATATCACCCAAATTTCAAAATCGACTTATTTAATAGG AACTACAGACGGATATTATACGCTTAATATTGATGATCTGAGTTTTAAAAATTACAATGTTTTTATTACTGATATTATGA CTAATAAACAAAATGAAACCTTTAGAAATGCTGCGATTTTTAACGAAGGAAGTTTTAAGTCTGATGAAAATAACATTACC CTGAATTATACAGTTCCGGAATACAATAAATACATCAATTCTGAATATCAATATCTGCTGGAAGGCTTTCAGAATGAATG GAGCGAATGGAGTACAAAAGCAACGGTGAATTTTAAAAATCTTCCTCCGGGAAAATATACTTTTAGAGTCAGGGCAAAAT ATGCCAATGTAATTTTGCAAAATCCGGCCTCATATACATTTGTGGTTTTAAAACCGTGGTATTTAACTAATCTGGCTTAT TTTATTTATTTTCTTTTGATGCTTGCAATGGCTTATTTTATTAATAAGGCGTATCGAAACTATTATCAAAAGCAGAAAGA AAAACTTATTGAAGAAAACAACCTTTTATTAGAGATTAAAGAGCTTGAAAACGAACAGCAGTTAATGAAACTTCGCAACG AACAGCTTTCTCAGGATGTAGATAATAAAAACCGTGAACTGGCAGTTTCTACGATGAGTTTAAACAGTAAGAACGAATTA CTGGCTTTTATTAAAGAAGATTTGAAAAAAACAGCTCAAAATGACAGTTCAAATATTAAATCTGTAATTAGTACCATCAA TAAAAACATTACCGAAGAAGATTCGTGGAATGTGTTTAAAGAAGCTTTTGATAATGCCGATAAAGATTTCCTTAAACGAA TAAAACAAATGCATCCAGCCTTAACGCCAAATGATCTGCGTTTGTGTGCTTATCTCAGATTGAATCTTTCATCTAAAGAA ATTGCTCCAATGTTTAATATTTCGGTACGAAGCGTTGAGATAAAACGATACCGTTTGCGAAAAAAGATGGATTTGCAACA CGAAATCGGTTTAGTAGAATATATTCTGGCTGTATAG
Upstream 100 bases:
>100_bases AAAAATATCCTACTTTAGAACTGTTTTAGTACTATTTTAATATCCTGACCAAATTTTGAAAACTAAACTATCTACCTTAC TGCTTTTAATTCATTTCCTG
Downstream 100 bases:
>100_bases TAATCCCAAAATCAGTATAAAATACCTATACATTACCACAACATTATGGTTTTATTAGGAATTTAAGAGGGAAATGTTAA CAAAATTAACATTCTGAAAT
Product: putative periplasmic ligand-binding sensor protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 918; Mature: 918
Protein sequence:
>918_residues MFSQEFPPIVKYSPSVYGAGNQSWMISQDHNNYLYFANNDGLLEYNGTSWQLYPGPNETIIRSVKVIGNKVYTGSYMNFG FWTRQADGKLKYTSLSDSIKNKILDDEQFWNILKYDHWILFQSLNRIYIYDTKMMQFKIIAPKNGVVKSFASTNAIYFQT LKEGLFEIESGKAKLVSDDPILKKFTVANVFAADEGLIIQTQLDGIHKLTGNSLSRIVTDVDAELKASFVYSSQRLQDGS FALGTVSNGIFILSDKGKLKYHLTQSKGLSNNTALSLFEDKDQNLWTGLDNGINCINMQSPVRSFTDDSGVLGTVYASAI HNGMLYIGTNQGLFCKPSQSNSDFKFINGTKGQVWSLAVYDDTLFCGHDSGTFVVINDIAKSIFSASGTWKFEPVPGNKN QLLQGNYYGLSVLEKTGNQWVFKNKVQGFDYSSRYFEIGDNLEVYVSHEYKGIFRLKLDSSLSKTQGFYTYKSPDKGKYA SLTKFNNSIYYAYKGGIFKLNPKTKQFVKDNVLSSIFEKDEYTSGKLIVDNSNKIWLFSKNYIHYFSASKLSSQLKENII PIPSSLTNSMLGYENITQISKSTYLIGTTDGYYTLNIDDLSFKNYNVFITDIMTNKQNETFRNAAIFNEGSFKSDENNIT LNYTVPEYNKYINSEYQYLLEGFQNEWSEWSTKATVNFKNLPPGKYTFRVRAKYANVILQNPASYTFVVLKPWYLTNLAY FIYFLLMLAMAYFINKAYRNYYQKQKEKLIEENNLLLEIKELENEQQLMKLRNEQLSQDVDNKNRELAVSTMSLNSKNEL LAFIKEDLKKTAQNDSSNIKSVISTINKNITEEDSWNVFKEAFDNADKDFLKRIKQMHPALTPNDLRLCAYLRLNLSSKE IAPMFNISVRSVEIKRYRLRKKMDLQHEIGLVEYILAV
Sequences:
>Translated_918_residues MFSQEFPPIVKYSPSVYGAGNQSWMISQDHNNYLYFANNDGLLEYNGTSWQLYPGPNETIIRSVKVIGNKVYTGSYMNFG FWTRQADGKLKYTSLSDSIKNKILDDEQFWNILKYDHWILFQSLNRIYIYDTKMMQFKIIAPKNGVVKSFASTNAIYFQT LKEGLFEIESGKAKLVSDDPILKKFTVANVFAADEGLIIQTQLDGIHKLTGNSLSRIVTDVDAELKASFVYSSQRLQDGS FALGTVSNGIFILSDKGKLKYHLTQSKGLSNNTALSLFEDKDQNLWTGLDNGINCINMQSPVRSFTDDSGVLGTVYASAI HNGMLYIGTNQGLFCKPSQSNSDFKFINGTKGQVWSLAVYDDTLFCGHDSGTFVVINDIAKSIFSASGTWKFEPVPGNKN QLLQGNYYGLSVLEKTGNQWVFKNKVQGFDYSSRYFEIGDNLEVYVSHEYKGIFRLKLDSSLSKTQGFYTYKSPDKGKYA SLTKFNNSIYYAYKGGIFKLNPKTKQFVKDNVLSSIFEKDEYTSGKLIVDNSNKIWLFSKNYIHYFSASKLSSQLKENII PIPSSLTNSMLGYENITQISKSTYLIGTTDGYYTLNIDDLSFKNYNVFITDIMTNKQNETFRNAAIFNEGSFKSDENNIT LNYTVPEYNKYINSEYQYLLEGFQNEWSEWSTKATVNFKNLPPGKYTFRVRAKYANVILQNPASYTFVVLKPWYLTNLAY FIYFLLMLAMAYFINKAYRNYYQKQKEKLIEENNLLLEIKELENEQQLMKLRNEQLSQDVDNKNRELAVSTMSLNSKNEL LAFIKEDLKKTAQNDSSNIKSVISTINKNITEEDSWNVFKEAFDNADKDFLKRIKQMHPALTPNDLRLCAYLRLNLSSKE IAPMFNISVRSVEIKRYRLRKKMDLQHEIGLVEYILAV >Mature_918_residues MFSQEFPPIVKYSPSVYGAGNQSWMISQDHNNYLYFANNDGLLEYNGTSWQLYPGPNETIIRSVKVIGNKVYTGSYMNFG FWTRQADGKLKYTSLSDSIKNKILDDEQFWNILKYDHWILFQSLNRIYIYDTKMMQFKIIAPKNGVVKSFASTNAIYFQT LKEGLFEIESGKAKLVSDDPILKKFTVANVFAADEGLIIQTQLDGIHKLTGNSLSRIVTDVDAELKASFVYSSQRLQDGS FALGTVSNGIFILSDKGKLKYHLTQSKGLSNNTALSLFEDKDQNLWTGLDNGINCINMQSPVRSFTDDSGVLGTVYASAI HNGMLYIGTNQGLFCKPSQSNSDFKFINGTKGQVWSLAVYDDTLFCGHDSGTFVVINDIAKSIFSASGTWKFEPVPGNKN QLLQGNYYGLSVLEKTGNQWVFKNKVQGFDYSSRYFEIGDNLEVYVSHEYKGIFRLKLDSSLSKTQGFYTYKSPDKGKYA SLTKFNNSIYYAYKGGIFKLNPKTKQFVKDNVLSSIFEKDEYTSGKLIVDNSNKIWLFSKNYIHYFSASKLSSQLKENII PIPSSLTNSMLGYENITQISKSTYLIGTTDGYYTLNIDDLSFKNYNVFITDIMTNKQNETFRNAAIFNEGSFKSDENNIT LNYTVPEYNKYINSEYQYLLEGFQNEWSEWSTKATVNFKNLPPGKYTFRVRAKYANVILQNPASYTFVVLKPWYLTNLAY FIYFLLMLAMAYFINKAYRNYYQKQKEKLIEENNLLLEIKELENEQQLMKLRNEQLSQDVDNKNRELAVSTMSLNSKNEL LAFIKEDLKKTAQNDSSNIKSVISTINKNITEEDSWNVFKEAFDNADKDFLKRIKQMHPALTPNDLRLCAYLRLNLSSKE IAPMFNISVRSVEIKRYRLRKKMDLQHEIGLVEYILAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105280; Mature: 105280
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSQEFPPIVKYSPSVYGAGNQSWMISQDHNNYLYFANNDGLLEYNGTSWQLYPGPNETI CCCCCCCCCEEECCCEECCCCCCEEEEECCCCEEEEECCCCEEEECCCEEEEECCCCHHH IRSVKVIGNKVYTGSYMNFGFWTRQADGKLKYTSLSDSIKNKILDDEQFWNILKYDHWIL HHHHHHHCCEEEECCEEECCEEEECCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHEEE FQSLNRIYIYDTKMMQFKIIAPKNGVVKSFASTNAIYFQTLKEGLFEIESGKAKLVSDDP ECCCCEEEEEEEEEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCEEEECCCC ILKKFTVANVFAADEGLIIQTQLDGIHKLTGNSLSRIVTDVDAELKASFVYSSQRLQDGS CHHHEEEEEEEECCCCEEEEEECCCHHHHCCCHHHHHHHHCCHHHEEEEEECCCCCCCCC FALGTVSNGIFILSDKGKLKYHLTQSKGLSNNTALSLFEDKDQNLWTGLDNGINCINMQS EEEEEECCCEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC PVRSFTDDSGVLGTVYASAIHNGMLYIGTNQGLFCKPSQSNSDFKFINGTKGQVWSLAVY HHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCEEECCCCCCCCEEEEECCCCCEEEEEEE DDTLFCGHDSGTFVVINDIAKSIFSASGTWKFEPVPGNKNQLLQGNYYGLSVLEKTGNQW CCEEEEECCCCCEEEEHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCEEEEEECCCCEE VFKNKVQGFDYSSRYFEIGDNLEVYVSHEYKGIFRLKLDSSLSKTQGFYTYKSPDKGKYA EEECCCCCCCCCCCEEEECCCEEEEEEECCCEEEEEEECCCHHHHCCEEEECCCCCCCEE SLTKFNNSIYYAYKGGIFKLNPKTKQFVKDNVLSSIFEKDEYTSGKLIVDNSNKIWLFSK EEEEECCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEC NYIHYFSASKLSSQLKENIIPIPSSLTNSMLGYENITQISKSTYLIGTTDGYYTLNIDDL CEEEEEEHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHCCCEEEEECCCCEEEEEECCE SFKNYNVFITDIMTNKQNETFRNAAIFNEGSFKSDENNITLNYTVPEYNKYINSEYQYLL EECCCEEEEEEEECCCCCCCHHHEEEECCCCCCCCCCCEEEEEECCHHHHHHCHHHHHHH EGFQNEWSEWSTKATVNFKNLPPGKYTFRVRAKYANVILQNPASYTFVVLKPWYLTNLAY HHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCEEEEEECCHHHHHHHH FIYFLLMLAMAYFINKAYRNYYQKQKEKLIEENNLLLEIKELENEQQLMKLRNEQLSQDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHC DNKNRELAVSTMSLNSKNELLAFIKEDLKKTAQNDSSNIKSVISTINKNITEEDSWNVFK CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH EAFDNADKDFLKRIKQMHPALTPNDLRLCAYLRLNLSSKEIAPMFNISVRSVEIKRYRLR HHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEHHHHHHH KKMDLQHEIGLVEYILAV HHCCHHHHHHHHHHHHCC >Mature Secondary Structure MFSQEFPPIVKYSPSVYGAGNQSWMISQDHNNYLYFANNDGLLEYNGTSWQLYPGPNETI CCCCCCCCCEEECCCEECCCCCCEEEEECCCCEEEEECCCCEEEECCCEEEEECCCCHHH IRSVKVIGNKVYTGSYMNFGFWTRQADGKLKYTSLSDSIKNKILDDEQFWNILKYDHWIL HHHHHHHCCEEEECCEEECCEEEECCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHEEE FQSLNRIYIYDTKMMQFKIIAPKNGVVKSFASTNAIYFQTLKEGLFEIESGKAKLVSDDP ECCCCEEEEEEEEEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHEECCCCEEEECCCC ILKKFTVANVFAADEGLIIQTQLDGIHKLTGNSLSRIVTDVDAELKASFVYSSQRLQDGS CHHHEEEEEEEECCCCEEEEEECCCHHHHCCCHHHHHHHHCCHHHEEEEEECCCCCCCCC FALGTVSNGIFILSDKGKLKYHLTQSKGLSNNTALSLFEDKDQNLWTGLDNGINCINMQS EEEEEECCCEEEEECCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCC PVRSFTDDSGVLGTVYASAIHNGMLYIGTNQGLFCKPSQSNSDFKFINGTKGQVWSLAVY HHHHCCCCCCCHHHHHHHHHHCCEEEEECCCCEEECCCCCCCCEEEEECCCCCEEEEEEE DDTLFCGHDSGTFVVINDIAKSIFSASGTWKFEPVPGNKNQLLQGNYYGLSVLEKTGNQW CCEEEEECCCCCEEEEHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCEEEEEECCCCEE VFKNKVQGFDYSSRYFEIGDNLEVYVSHEYKGIFRLKLDSSLSKTQGFYTYKSPDKGKYA EEECCCCCCCCCCCEEEECCCEEEEEEECCCEEEEEEECCCHHHHCCEEEECCCCCCCEE SLTKFNNSIYYAYKGGIFKLNPKTKQFVKDNVLSSIFEKDEYTSGKLIVDNSNKIWLFSK EEEEECCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEC NYIHYFSASKLSSQLKENIIPIPSSLTNSMLGYENITQISKSTYLIGTTDGYYTLNIDDL CEEEEEEHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHCCCEEEEECCCCEEEEEECCE SFKNYNVFITDIMTNKQNETFRNAAIFNEGSFKSDENNITLNYTVPEYNKYINSEYQYLL EECCCEEEEEEEECCCCCCCHHHEEEECCCCCCCCCCCEEEEEECCHHHHHHCHHHHHHH EGFQNEWSEWSTKATVNFKNLPPGKYTFRVRAKYANVILQNPASYTFVVLKPWYLTNLAY HHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCEEEEEECCHHHHHHHH FIYFLLMLAMAYFINKAYRNYYQKQKEKLIEENNLLLEIKELENEQQLMKLRNEQLSQDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHC DNKNRELAVSTMSLNSKNELLAFIKEDLKKTAQNDSSNIKSVISTINKNITEEDSWNVFK CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHH EAFDNADKDFLKRIKQMHPALTPNDLRLCAYLRLNLSSKEIAPMFNISVRSVEIKRYRLR HHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEHHHHHHH KKMDLQHEIGLVEYILAV HHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA