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The map label for this gene is 146300088

Identifier: 146300088

GI number: 146300088

Start: 2804401

End: 2805918

Strand: Direct

Name: 146300088

Synonym: Fjoh_2333

Alternate gene names: NA

Gene position: 2804401-2805918 (Clockwise)

Preceding gene: 146300087

Following gene: 146300090

Centisome position: 46.0

GC content: 25.69

Gene sequence:

>1518_bases
ATGGAAATAGAAGAATGGTTTAAATTAAAACGTTATCCTCATATTGGAGAACCAATAACACAAAAAGATTATAAATGGAT
TAAGAGGTATGTGCAAGATGAAAACTGCATTAAAAAGCATAGTTTTTTACCCTTAGTACATAAATGTATTGTTCAAAGAA
AATATCGTGCTGATTTATCTACAAATACCAGAAATCCTAGTGGAAAAAGAAGACGAATTATAGGAACTCCTAAAATCAGA
AACATTTATTATTCATCTCATTTAGATTCTTTGATATTTTCATATTACAATTATCTACTAAGTGAAAATTATAAAGAATT
GATGAAATTAAAAAATTTCAATAATTCAATCGTAGCTTATCGCAAAATTCCCCTTTTTGAGGGTTCAGAGAAAAACAAAT
GTAATATTGATTTTGCGAAAGATACTTTTGAATATATTGAAAAGAATAAAGAGAAAAAACTCAGTGTAATTGTTGCAGAT
GTAACATCTTTTTTTGATAATTTAAACCATAAAATATTAAAAAAACAGTGGAGTAGACTACTAAATGAGAAAACCTTGCC
AGACTGCCATTTTAATGTATTTAAAGCACTTACAAACCTACGATACGTAGAATCAGATCAATTATTTAATAGTTATTTTG
GAACTATGATTGTGGAAAAAGGTATTCCTAATTCAGATAAAAAAGAATACAAAAGAATAAAAATTAATTCTAATAAATAT
TTCAAAGAAAAAAATGCTGTTGCTTATTGTAGTAAAAGTGATTTTTTAAAGAATAATTTAAATCTTATTATCTCTGCCAA
TAGTACTAAAGGAATACCTCAAGGTAGTCCAATAAGCGCAACATTAGCGAATGTTTATATGATGGATTTTGATCAGGAGG
TATATGATAAGATTGTATCGAACAAAGGTTTTTATCAAAGATACAGCGATGATTTAATTATTATTTGCGAACAAGAATTT
GAAGATGATATAATTAAGTTTGTTAGAGACAGAATTCAGAATTTAGTAAAATTAGAAATTAGTGAAAGTAAAACTAAGGT
TTACAGATTTGAAGAATTAAATGGAAAATTTTTAGGCTTTGAAATAGATGAAAAAACAAAAGAACCTAATTTTAATAAAA
CTTTAGAGTATTTAGGTTTTGAATATAATGGGCAAAAAATTTTAGTTAAAACTTCGGGTTTCTCTAAGTTTTATAGATCA
ATGAAAAGATCTTTTAAAAAATCTACATCTTTGGCAATTAACAGTAAAAATCCAGATAGAGACATTTTCAAATCTAGATT
ATATAAAAGATTTACATATAAAGGGGCAAGAAGAAAATTAATTTTTCGCCCATCAAAAGATAATCCAAGATTGTACTTGA
AAACAAAAGAATATTATTGGGGAAATTATTTAAGTTATCTTTATAAAGCAAATGATAGCATGAAATCAATAAATAGATCT
GATGCCATAAAAAGACAAAGTAAAAAAATTTGGAAAAGTTTTCATAGATTGATGAGATATCATGAAAGTCGATTATGA

Upstream 100 bases:

>100_bases
TACCTGAAGAGAGTAGTGTTGAAATAGCATTTTATGTGAAAGCTTCGAAAGGCATGTGCATTCTAAACCTGCTACTATTA
ATCTGGCCCTCCTTTTTTAT

Downstream 100 bases:

>100_bases
TATTTTCTTTGTTTCCCCGCTAGCGCGAGCGTCTCGCTCGTGAACACAAAGAAATGCACGAGCGAGACGCTCGCGCCAGC
AAAAAAATAAAATTCTATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MEIEEWFKLKRYPHIGEPITQKDYKWIKRYVQDENCIKKHSFLPLVHKCIVQRKYRADLSTNTRNPSGKRRRIIGTPKIR
NIYYSSHLDSLIFSYYNYLLSENYKELMKLKNFNNSIVAYRKIPLFEGSEKNKCNIDFAKDTFEYIEKNKEKKLSVIVAD
VTSFFDNLNHKILKKQWSRLLNEKTLPDCHFNVFKALTNLRYVESDQLFNSYFGTMIVEKGIPNSDKKEYKRIKINSNKY
FKEKNAVAYCSKSDFLKNNLNLIISANSTKGIPQGSPISATLANVYMMDFDQEVYDKIVSNKGFYQRYSDDLIIICEQEF
EDDIIKFVRDRIQNLVKLEISESKTKVYRFEELNGKFLGFEIDEKTKEPNFNKTLEYLGFEYNGQKILVKTSGFSKFYRS
MKRSFKKSTSLAINSKNPDRDIFKSRLYKRFTYKGARRKLIFRPSKDNPRLYLKTKEYYWGNYLSYLYKANDSMKSINRS
DAIKRQSKKIWKSFHRLMRYHESRL

Sequences:

>Translated_505_residues
MEIEEWFKLKRYPHIGEPITQKDYKWIKRYVQDENCIKKHSFLPLVHKCIVQRKYRADLSTNTRNPSGKRRRIIGTPKIR
NIYYSSHLDSLIFSYYNYLLSENYKELMKLKNFNNSIVAYRKIPLFEGSEKNKCNIDFAKDTFEYIEKNKEKKLSVIVAD
VTSFFDNLNHKILKKQWSRLLNEKTLPDCHFNVFKALTNLRYVESDQLFNSYFGTMIVEKGIPNSDKKEYKRIKINSNKY
FKEKNAVAYCSKSDFLKNNLNLIISANSTKGIPQGSPISATLANVYMMDFDQEVYDKIVSNKGFYQRYSDDLIIICEQEF
EDDIIKFVRDRIQNLVKLEISESKTKVYRFEELNGKFLGFEIDEKTKEPNFNKTLEYLGFEYNGQKILVKTSGFSKFYRS
MKRSFKKSTSLAINSKNPDRDIFKSRLYKRFTYKGARRKLIFRPSKDNPRLYLKTKEYYWGNYLSYLYKANDSMKSINRS
DAIKRQSKKIWKSFHRLMRYHESRL
>Mature_505_residues
MEIEEWFKLKRYPHIGEPITQKDYKWIKRYVQDENCIKKHSFLPLVHKCIVQRKYRADLSTNTRNPSGKRRRIIGTPKIR
NIYYSSHLDSLIFSYYNYLLSENYKELMKLKNFNNSIVAYRKIPLFEGSEKNKCNIDFAKDTFEYIEKNKEKKLSVIVAD
VTSFFDNLNHKILKKQWSRLLNEKTLPDCHFNVFKALTNLRYVESDQLFNSYFGTMIVEKGIPNSDKKEYKRIKINSNKY
FKEKNAVAYCSKSDFLKNNLNLIISANSTKGIPQGSPISATLANVYMMDFDQEVYDKIVSNKGFYQRYSDDLIIICEQEF
EDDIIKFVRDRIQNLVKLEISESKTKVYRFEELNGKFLGFEIDEKTKEPNFNKTLEYLGFEYNGQKILVKTSGFSKFYRS
MKRSFKKSTSLAINSKNPDRDIFKSRLYKRFTYKGARRKLIFRPSKDNPRLYLKTKEYYWGNYLSYLYKANDSMKSINRS
DAIKRQSKKIWKSFHRLMRYHESRL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60390; Mature: 60390

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIEEWFKLKRYPHIGEPITQKDYKWIKRYVQDENCIKKHSFLPLVHKCIVQRKYRADLS
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TNTRNPSGKRRRIIGTPKIRNIYYSSHLDSLIFSYYNYLLSENYKELMKLKNFNNSIVAY
CCCCCCCCCCCEEECCCCHHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEE
RKIPLFEGSEKNKCNIDFAKDTFEYIEKNKEKKLSVIVADVTSFFDNLNHKILKKQWSRL
EEEECCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEKTLPDCHFNVFKALTNLRYVESDQLFNSYFGTMIVEKGIPNSDKKEYKRIKINSNKY
HCCCCCCCHHHHHHHHHHHCHHCCHHHHHHHHHHHHHEECCCCCCCCHHHEEEEECCCCC
FKEKNAVAYCSKSDFLKNNLNLIISANSTKGIPQGSPISATLANVYMMDFDQEVYDKIVS
CCCCCCEEEECCHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHC
NKGFYQRYSDDLIIICEQEFEDDIIKFVRDRIQNLVKLEISESKTKVYRFEELNGKFLGF
CCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCHHHEEEEECCCCEEEEE
EIDEKTKEPNFNKTLEYLGFEYNGQKILVKTSGFSKFYRSMKRSFKKSTSLAINSKNPDR
EECCCCCCCCHHHHHHHCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECCCCCH
DIFKSRLYKRFTYKGARRKLIFRPSKDNPRLYLKTKEYYWGNYLSYLYKANDSMKSINRS
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHCCHH
DAIKRQSKKIWKSFHRLMRYHESRL
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIEEWFKLKRYPHIGEPITQKDYKWIKRYVQDENCIKKHSFLPLVHKCIVQRKYRADLS
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
TNTRNPSGKRRRIIGTPKIRNIYYSSHLDSLIFSYYNYLLSENYKELMKLKNFNNSIVAY
CCCCCCCCCCCEEECCCCHHHEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEE
RKIPLFEGSEKNKCNIDFAKDTFEYIEKNKEKKLSVIVADVTSFFDNLNHKILKKQWSRL
EEEECCCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEKTLPDCHFNVFKALTNLRYVESDQLFNSYFGTMIVEKGIPNSDKKEYKRIKINSNKY
HCCCCCCCHHHHHHHHHHHCHHCCHHHHHHHHHHHHHEECCCCCCCCHHHEEEEECCCCC
FKEKNAVAYCSKSDFLKNNLNLIISANSTKGIPQGSPISATLANVYMMDFDQEVYDKIVS
CCCCCCEEEECCHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHC
NKGFYQRYSDDLIIICEQEFEDDIIKFVRDRIQNLVKLEISESKTKVYRFEELNGKFLGF
CCCHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEEECCCHHHEEEEECCCCEEEEE
EIDEKTKEPNFNKTLEYLGFEYNGQKILVKTSGFSKFYRSMKRSFKKSTSLAINSKNPDR
EECCCCCCCCHHHHHHHCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECCCCCH
DIFKSRLYKRFTYKGARRKLIFRPSKDNPRLYLKTKEYYWGNYLSYLYKANDSMKSINRS
HHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHCCHH
DAIKRQSKKIWKSFHRLMRYHESRL
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA