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The map label for this gene is ydiP [C]

Identifier: 146300073

GI number: 146300073

Start: 2786355

End: 2786906

Strand: Reverse

Name: ydiP [C]

Synonym: Fjoh_2318

Alternate gene names: 146300073

Gene position: 2786906-2786355 (Counterclockwise)

Preceding gene: 146300074

Following gene: 146300072

Centisome position: 45.71

GC content: 29.17

Gene sequence:

>552_bases
ATGAAACTATTTATAAAGTTTGACATTAACACCATTTGCTCACTTTATCTAAAACAAAATCTGGAACAAAATAATATAAA
TTTTACCAGTCTGGGTTTTGGAGAAATTGAAATTGATGATAATATTGATGCTGAAGCACTCGAAACTTTAAAAAATAATC
TAAGTCCCTGTGGATTTGAAATAGTTGAAAATCAGAAAAGTGTATTAGTTCAAAAAATAAAAGACGCCATAATCGAACTT
GTTTTTATGGAAGACAGCAACAATTATAAAAGTTCTGTATTTCTTGCCGAAAAACTAAACCATAGTTATGGTTATTTATC
GAATGTGTTTTCAGAAGTTACCTATTCTTCCATCGAAAATTTCATCATTTTACAGAAAATTGAGAGAGCAAAACAGTTAA
TTATTATCAACGAAATGAGTTTAACTGAAATCGCATTCTTACTAAATTATTCTAGTGTTGCACATTTAAGCACACAATTT
AAAAATACGACCGGAATCACGCCGTCGGCATTTCAAAGAATAATTAAGAAACGCAGAGAGAATCTAAAATAA

Upstream 100 bases:

>100_bases
AAAAATAAGTATTTTCTATTCTGTTTAACATATATTTTAAAAACATTAAACGCGGTAACCACAAATAAATTAATTATCTT
TAACCAAAATTTTCTATAAA

Downstream 100 bases:

>100_bases
AAACCTAAATACCATACTAAAATGCAAAAAAACGCATTAAATATATTACTGGCTGATGATGATGAAGATGATCGTCTTTT
TTTTAAGGATGCTTTTGAAG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Regulatory Protein; Transcriptional Regulator Arac Family; AraC Family Transcription Regulator; AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator; Regulatory Helix-Turn-Helix Protein AraC Family

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKLFIKFDINTICSLYLKQNLEQNNINFTSLGFGEIEIDDNIDAEALETLKNNLSPCGFEIVENQKSVLVQKIKDAIIEL
VFMEDSNNYKSSVFLAEKLNHSYGYLSNVFSEVTYSSIENFIILQKIERAKQLIIINEMSLTEIAFLLNYSSVAHLSTQF
KNTTGITPSAFQRIIKKRRENLK

Sequences:

>Translated_183_residues
MKLFIKFDINTICSLYLKQNLEQNNINFTSLGFGEIEIDDNIDAEALETLKNNLSPCGFEIVENQKSVLVQKIKDAIIEL
VFMEDSNNYKSSVFLAEKLNHSYGYLSNVFSEVTYSSIENFIILQKIERAKQLIIINEMSLTEIAFLLNYSSVAHLSTQF
KNTTGITPSAFQRIIKKRRENLK
>Mature_183_residues
MKLFIKFDINTICSLYLKQNLEQNNINFTSLGFGEIEIDDNIDAEALETLKNNLSPCGFEIVENQKSVLVQKIKDAIIEL
VFMEDSNNYKSSVFLAEKLNHSYGYLSNVFSEVTYSSIENFIILQKIERAKQLIIINEMSLTEIAFLLNYSSVAHLSTQF
KNTTGITPSAFQRIIKKRRENLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21004; Mature: 21004

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFIKFDINTICSLYLKQNLEQNNINFTSLGFGEIEIDDNIDAEALETLKNNLSPCGFE
CEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHCCCCCCCHH
IVENQKSVLVQKIKDAIIELVFMEDSNNYKSSVFLAEKLNHSYGYLSNVFSEVTYSSIEN
HHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FIILQKIERAKQLIIINEMSLTEIAFLLNYSSVAHLSTQFKNTTGITPSAFQRIIKKRRE
HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NLK
CCC
>Mature Secondary Structure
MKLFIKFDINTICSLYLKQNLEQNNINFTSLGFGEIEIDDNIDAEALETLKNNLSPCGFE
CEEEEEECHHHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHCCCCCCCHH
IVENQKSVLVQKIKDAIIELVFMEDSNNYKSSVFLAEKLNHSYGYLSNVFSEVTYSSIEN
HHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FIILQKIERAKQLIIINEMSLTEIAFLLNYSSVAHLSTQFKNTTGITPSAFQRIIKKRRE
HHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NLK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA