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The map label for this gene is cph1 [H]

Identifier: 146300071

GI number: 146300071

Start: 2784083

End: 2785867

Strand: Reverse

Name: cph1 [H]

Synonym: Fjoh_2316

Alternate gene names: 146300071

Gene position: 2785867-2784083 (Counterclockwise)

Preceding gene: 146300072

Following gene: 146300070

Centisome position: 45.69

GC content: 32.61

Gene sequence:

>1785_bases
ATGAAATGGATACCAAATTTTAATTCTTCAAACTCTTTGAGAGTTATTTTTGTAATCGCAGTTTTCATTCTGTTATTTCT
TTCTTCTATTGCCTATAAACATAATCAGGACTTGAACGAATCGAGTAAGCTGGTTATGCATACTTACGAAATAAACATTC
AGCTCGAACGTTTAATGTCGGCAATAAAAGATGCTGAAACCGGTCAGAGAGGTTATATTATTACACGAAACGCACGTTTT
TTAACTCCGTATATTTATTCGAGAGACAAAGTAAATACGTCGTTTATAACATTAAAAAAACTAACTGCTGACAATCCCGT
ACAGCAGGAAAATCTTCGAAAGTTATTTAAACTCATTATCCAGCGTTTTGTTTCTTTTGAAAATTGCCTAAAATACAGCG
ATCCCAAAACATATGATAAACGAAAACTCGACAATCATATGTTTGGGGGACGAATTTTGATGGAAAACATTCGTTTTAAA
GTAGACGAAATGAACGATATCGAAAAAACGTATCTTAAAAACAGACTTAAAATTTATGACGACGAAATCTCATTAAGTCC
GTTATTTTCTATTTCTTTATTTTTAACCGCATTATTCTTTATTTTACTGGCTTACAGACAAATCAGTAAAGATTTCCAGC
GTTTAAAAGTCTTCAATAAAAAACTTTTAATTTCAAACGGATTAATTGCTGAATCTGAAGCGATTGGTAAATTCAGTACC
TGGCAATGGGATTTAGATGCCAATAAAATCGATTATTCAGACAATCAATTTCGTTTACTGGGTCATGAACCGGGAGCATT
TGTTCCTGTAAAAGAAACTTTTTTAGATTTTGTTCATCCAGATGATAAAGAAACAGTTTCTAATTCTATTGAAGGAATAA
TCAATAACAGACAGCTTCCGTTTGTGTATTATAAAATACTGCTTCCTAATCATCAAATCAGATATTTTAAATCAACAGGA
AAATTATTGACAGACCAGCAGGGAAGTAAAATTTTACTGGGAATTAATTTTGATATTACTGATGAGCATTTACTCAATAT
CGAATTGCAGGAACGCAATAAAGAACTTGAAAAAAGCAATAAAGAGCTGGCTTCTTTTAACCACGTTGCGAGTCATGATT
TACAGGAACCGCTTAGAAAAATTCAGACTTTTATTTCAAGGGTTTCTGATGCCGATAAAGCAGTTATGTCACAAAGTGCA
AGAGATTACATTTCAAAAATTGAAGTTTCGGCAAAAAGAATGCGTGTGCTGATTGATGATTTACTTTTGTTTTCGAGAAC
CAATACCACGAAAAAGGAATTCATTAAAACCAATTTAAATGAGTTACTGGAAAATGCAGAATCTGAACTAACAGAAATTA
TCGAAGAAAAAAGTGCCGTAATAATGGCAACAAAACTTCCTAAGCTTTCGGTTATTCCTTATCAAATAGAACAGCTTTTC
ATCAACCTGATTGGAAATTCATTAAAATACAGCAAACCTAATACTATACCTGCCATTTCTATTGACAGTGTAAAAGTAAA
TGCCGAAGATTATCCAGAAATTTTAGATCAGAATATTAAAAAGTTTCATAAAATAACTTTTACAGATAACGGAATGGGAT
TTGATCCTCAGTTTAAGGAAACGATCTTTATTTTGTTTCAGCGTCTGCATTCGAAAACTGATTATCCCGGAACCGGAATT
GGACTGGCGATTTGTAAGAAAATCGTAGACAACCATAAAGGCTATATTATGGCCGATAGTGAACCGGAAAAAGGATCGGT
TTTTACCATATTTCTTCCCGATTAA

Upstream 100 bases:

>100_bases
ATAATTAATGAAGTCGTAACCGTAAACTGGCACTATCATACCTCTGGGTTAAACCGTGATAATTTCTTGCTCCGACTAAA
ATAAAAATAATAGTATACCA

Downstream 100 bases:

>100_bases
ACTGCGGAAAGCCCTTAAAACACTACATCTTAAAACGTTATATAAATTCTTTATGGGAATTATATAACGTTTCTTTTTTA
TGCTGTAAAGCAAAATGTTT

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 594; Mature: 594

Protein sequence:

>594_residues
MKWIPNFNSSNSLRVIFVIAVFILLFLSSIAYKHNQDLNESSKLVMHTYEINIQLERLMSAIKDAETGQRGYIITRNARF
LTPYIYSRDKVNTSFITLKKLTADNPVQQENLRKLFKLIIQRFVSFENCLKYSDPKTYDKRKLDNHMFGGRILMENIRFK
VDEMNDIEKTYLKNRLKIYDDEISLSPLFSISLFLTALFFILLAYRQISKDFQRLKVFNKKLLISNGLIAESEAIGKFST
WQWDLDANKIDYSDNQFRLLGHEPGAFVPVKETFLDFVHPDDKETVSNSIEGIINNRQLPFVYYKILLPNHQIRYFKSTG
KLLTDQQGSKILLGINFDITDEHLLNIELQERNKELEKSNKELASFNHVASHDLQEPLRKIQTFISRVSDADKAVMSQSA
RDYISKIEVSAKRMRVLIDDLLLFSRTNTTKKEFIKTNLNELLENAESELTEIIEEKSAVIMATKLPKLSVIPYQIEQLF
INLIGNSLKYSKPNTIPAISIDSVKVNAEDYPEILDQNIKKFHKITFTDNGMGFDPQFKETIFILFQRLHSKTDYPGTGI
GLAICKKIVDNHKGYIMADSEPEKGSVFTIFLPD

Sequences:

>Translated_594_residues
MKWIPNFNSSNSLRVIFVIAVFILLFLSSIAYKHNQDLNESSKLVMHTYEINIQLERLMSAIKDAETGQRGYIITRNARF
LTPYIYSRDKVNTSFITLKKLTADNPVQQENLRKLFKLIIQRFVSFENCLKYSDPKTYDKRKLDNHMFGGRILMENIRFK
VDEMNDIEKTYLKNRLKIYDDEISLSPLFSISLFLTALFFILLAYRQISKDFQRLKVFNKKLLISNGLIAESEAIGKFST
WQWDLDANKIDYSDNQFRLLGHEPGAFVPVKETFLDFVHPDDKETVSNSIEGIINNRQLPFVYYKILLPNHQIRYFKSTG
KLLTDQQGSKILLGINFDITDEHLLNIELQERNKELEKSNKELASFNHVASHDLQEPLRKIQTFISRVSDADKAVMSQSA
RDYISKIEVSAKRMRVLIDDLLLFSRTNTTKKEFIKTNLNELLENAESELTEIIEEKSAVIMATKLPKLSVIPYQIEQLF
INLIGNSLKYSKPNTIPAISIDSVKVNAEDYPEILDQNIKKFHKITFTDNGMGFDPQFKETIFILFQRLHSKTDYPGTGI
GLAICKKIVDNHKGYIMADSEPEKGSVFTIFLPD
>Mature_594_residues
MKWIPNFNSSNSLRVIFVIAVFILLFLSSIAYKHNQDLNESSKLVMHTYEINIQLERLMSAIKDAETGQRGYIITRNARF
LTPYIYSRDKVNTSFITLKKLTADNPVQQENLRKLFKLIIQRFVSFENCLKYSDPKTYDKRKLDNHMFGGRILMENIRFK
VDEMNDIEKTYLKNRLKIYDDEISLSPLFSISLFLTALFFILLAYRQISKDFQRLKVFNKKLLISNGLIAESEAIGKFST
WQWDLDANKIDYSDNQFRLLGHEPGAFVPVKETFLDFVHPDDKETVSNSIEGIINNRQLPFVYYKILLPNHQIRYFKSTG
KLLTDQQGSKILLGINFDITDEHLLNIELQERNKELEKSNKELASFNHVASHDLQEPLRKIQTFISRVSDADKAVMSQSA
RDYISKIEVSAKRMRVLIDDLLLFSRTNTTKKEFIKTNLNELLENAESELTEIIEEKSAVIMATKLPKLSVIPYQIEQLF
INLIGNSLKYSKPNTIPAISIDSVKVNAEDYPEILDQNIKKFHKITFTDNGMGFDPQFKETIFILFQRLHSKTDYPGTGI
GLAICKKIVDNHKGYIMADSEPEKGSVFTIFLPD

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790346, Length=233, Percent_Identity=28.3261802575107, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=30.5676855895196, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788713, Length=264, Percent_Identity=23.8636363636364, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789149, Length=256, Percent_Identity=25.390625, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI145693157, Length=345, Percent_Identity=22.0289855072464, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790300, Length=281, Percent_Identity=23.8434163701068, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788393, Length=244, Percent_Identity=25, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790436, Length=242, Percent_Identity=23.9669421487603, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68778; Mature: 68778

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIPNFNSSNSLRVIFVIAVFILLFLSSIAYKHNQDLNESSKLVMHTYEINIQLERLMS
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEHHHHHH
AIKDAETGQRGYIITRNARFLTPYIYSRDKVNTSFITLKKLTADNPVQQENLRKLFKLII
HHHHCCCCCCCEEEECCCCEEEHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
QRFVSFENCLKYSDPKTYDKRKLDNHMFGGRILMENIRFKVDEMNDIEKTYLKNRLKIYD
HHHHHHHHHHCCCCCCCHHHHHHHCHHCCCHHEEHHHHEEECCHHHHHHHHHHCCCEEEC
DEISLSPLFSISLFLTALFFILLAYRQISKDFQRLKVFNKKLLISNGLIAESEAIGKFST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEECCCCCCCCCC
WQWDLDANKIDYSDNQFRLLGHEPGAFVPVKETFLDFVHPDDKETVSNSIEGIINNRQLP
EEEECCCCCCCCCCCCEEEEECCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
FVYYKILLPNHQIRYFKSTGKLLTDQQGSKILLGINFDITDEHLLNIELQERNKELEKSN
EEEEEEECCCCEEEEEECCCCEEECCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHHH
KELASFNHVASHDLQEPLRKIQTFISRVSDADKAVMSQSARDYISKIEVSAKRMRVLIDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLFSRTNTTKKEFIKTNLNELLENAESELTEIIEEKSAVIMATKLPKLSVIPYQIEQLF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEECHHHHHHHH
INLIGNSLKYSKPNTIPAISIDSVKVNAEDYPEILDQNIKKFHKITFTDNGMGFDPQFKE
HHHHCCCCCCCCCCCCCEEEECCEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHH
TIFILFQRLHSKTDYPGTGIGLAICKKIVDNHKGYIMADSEPEKGSVFTIFLPD
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure
MKWIPNFNSSNSLRVIFVIAVFILLFLSSIAYKHNQDLNESSKLVMHTYEINIQLERLMS
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEHHHHHH
AIKDAETGQRGYIITRNARFLTPYIYSRDKVNTSFITLKKLTADNPVQQENLRKLFKLII
HHHHCCCCCCCEEEECCCCEEEHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
QRFVSFENCLKYSDPKTYDKRKLDNHMFGGRILMENIRFKVDEMNDIEKTYLKNRLKIYD
HHHHHHHHHHCCCCCCCHHHHHHHCHHCCCHHEEHHHHEEECCHHHHHHHHHHCCCEEEC
DEISLSPLFSISLFLTALFFILLAYRQISKDFQRLKVFNKKLLISNGLIAESEAIGKFST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEECCCCCCCCCC
WQWDLDANKIDYSDNQFRLLGHEPGAFVPVKETFLDFVHPDDKETVSNSIEGIINNRQLP
EEEECCCCCCCCCCCCEEEEECCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
FVYYKILLPNHQIRYFKSTGKLLTDQQGSKILLGINFDITDEHLLNIELQERNKELEKSN
EEEEEEECCCCEEEEEECCCCEEECCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHHH
KELASFNHVASHDLQEPLRKIQTFISRVSDADKAVMSQSARDYISKIEVSAKRMRVLIDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLFSRTNTTKKEFIKTNLNELLENAESELTEIIEEKSAVIMATKLPKLSVIPYQIEQLF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEECHHHHHHHH
INLIGNSLKYSKPNTIPAISIDSVKVNAEDYPEILDQNIKKFHKITFTDNGMGFDPQFKE
HHHHCCCCCCCCCCCCCEEEECCEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHH
TIFILFQRLHSKTDYPGTGIGLAICKKIVDNHKGYIMADSEPEKGSVFTIFLPD
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]