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The map label for this gene is rnk [C]

Identifier: 146300052

GI number: 146300052

Start: 2770985

End: 2771416

Strand: Direct

Name: rnk [C]

Synonym: Fjoh_2297

Alternate gene names: 146300052

Gene position: 2770985-2771416 (Clockwise)

Preceding gene: 146300040

Following gene: 146300053

Centisome position: 45.45

GC content: 33.1

Gene sequence:

>432_bases
ATGAAGAGTTGTTTATCATACGCAATGAAAAGTGAAGCAAAAAAGAAAGTCATGTCACAAAATAATATCATTTTAACAAC
AGGAACATATGATTTAATTAAAGACCACGTAAGAAGAAAAAAAGTTACACCGCAGGAAGAAGAACTTTTATTGAGCGAAC
TAAAACATGCAACGCAGGTATTGAGAAAAAACCTTCCCGAAGATGTTGTTTCGGTAAACCGAAAAGTAACTTACAAAGAC
CATAATACTAACCAGGAAAAAACAATTCTTTTGGTTGGTCCCGAAAAAGTAAAAGTGAGCAAAAACAAGATTTCGGTTCT
TTCAGACGAAGGTATTGCAATGGTTGGTTATAAAGTAGGAGATCTTATAGAATGGCCTGCTAAAAAAGGGCATTTAAAAT
TAGAAATTTTAAAAGTAGAAGCAGAGGCATAA

Upstream 100 bases:

>100_bases
GCAACTCTAAGCAGGGATCCTTTTTTATAGTTCGTTTTTATTTAACCTCAATTTTCATTCAGGATATGATATCATTGAAT
TGAATCGAGCTGGATATTCA

Downstream 100 bases:

>100_bases
TATTTTATTGTTTTCGATTTGAGTTTAGTAACAATCCCAAAAGAGTTTTTCTTTTGGGATTTTTTATGCAGAAACCAAAA
GAAATAATAAGATAATTACT

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: Transcription Elongation Factor; Transcription Elongation Factor GreA/GreB Domain Protein; Regulator Of Nucleoside Diphosphate Kinase

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKSCLSYAMKSEAKKKVMSQNNIILTTGTYDLIKDHVRRKKVTPQEEELLLSELKHATQVLRKNLPEDVVSVNRKVTYKD
HNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPAKKGHLKLEILKVEAEA

Sequences:

>Translated_143_residues
MKSCLSYAMKSEAKKKVMSQNNIILTTGTYDLIKDHVRRKKVTPQEEELLLSELKHATQVLRKNLPEDVVSVNRKVTYKD
HNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPAKKGHLKLEILKVEAEA
>Mature_143_residues
MKSCLSYAMKSEAKKKVMSQNNIILTTGTYDLIKDHVRRKKVTPQEEELLLSELKHATQVLRKNLPEDVVSVNRKVTYKD
HNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPAKKGHLKLEILKVEAEA

Specific function: Rnk And Sspa Can Functionally Replace P.Aeruginosa Alginate Regulatory Gene Algr2. [C]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16182; Mature: 16182

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSCLSYAMKSEAKKKVMSQNNIILTTGTYDLIKDHVRRKKVTPQEEELLLSELKHATQV
CCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRKNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVG
HHHCCCHHHHHCCCEEEECCCCCCCCEEEEEECCCEEEECCCEEEEECCCCEEEEEEECC
DLIEWPAKKGHLKLEILKVEAEA
CHHHCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MKSCLSYAMKSEAKKKVMSQNNIILTTGTYDLIKDHVRRKKVTPQEEELLLSELKHATQV
CCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LRKNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVG
HHHCCCHHHHHCCCEEEECCCCCCCCEEEEEECCCEEEECCCEEEEECCCCEEEEEEECC
DLIEWPAKKGHLKLEILKVEAEA
CHHHCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA