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The map label for this gene is yddE [C]

Identifier: 146300049

GI number: 146300049

Start: 2768664

End: 2769461

Strand: Reverse

Name: yddE [C]

Synonym: Fjoh_2294

Alternate gene names: 146300049

Gene position: 2769461-2768664 (Counterclockwise)

Preceding gene: 146300050

Following gene: 146300048

Centisome position: 45.42

GC content: 34.59

Gene sequence:

>798_bases
ATGAAGACTTATTTTGTTGACTCATTTACGAATGAAAAATTTAAAGGAAATCCAGCAGCAGTTTGTCTTCCCAATATAGA
ATTAGATGCAGAAAGCATGCAGAGTATTGCTGCAGAAATTGGATTTTCGGAAACGGCTTTTATAAAACAAATAAAAGATA
ATACATACAGTATTCGATTTTTTAGCCCAAAAACCGAAATTCCGTTATGCGGGCATGCGACATTGGCTTCTTCTAAAATT
CTTTTCAGCACTACTTCATTTGAGAGCATAAAATTTATTAATATCAATAATGTTGAATTGTTTATTGAGAAAGAAGCTGA
TAAAATAAAAATGCAGTTTCCGGTTTATGAAACAGAAGAAACTGAGGTGCCTCAAAAACTGCTCGATGCACTTGGAGTTT
CTGAAATTCTGGAAAAAAGATACAGCCCAAACAATAAAATAATTTTACTTGAAATTGAAAGCGCCCGCAAACTGGCAGAT
TTAAAACCCGATTTTACAGCTTTGGTCAATTCGCATACCGGAATAAACGGGGTTTTGTTAACTGCAATTTCAGACAACGA
AAATTTCGATTTCCATTACCGATATTTCTGGCCTTGGGCAGGAACTGACGAAGATCCTGTAACGGGAGGCGTTCAAACTT
TTTTGACAAAATATTGGGCCAAAAAACTGAATAAAACAAAACTAAATGCCTTTCAATCTTCTTTAAGAACCGGAACTATG
AGTACAGAACTTGTACAAGACAAAGTTTACATTCTTGGAGAAGCAGTGATTGTTCTGGAAGGCAATTTTATTTTATAA

Upstream 100 bases:

>100_bases
AGGATAACAGTTTAGACCCAATGATTAACAATTAGAATAAAGCAGTATATTGATTTAGAATATTTTCGCTTTTATACATT
TAAAAACACCCAAATAAAAA

Downstream 100 bases:

>100_bases
ATCAAAAAACAAAACCTATGAAACTAGTAATAACCGCTTTACTTTTAATTTCAAACTTTACATTATTCGCACAATCAAAC
CAATTTACGGGTGATTATGC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKTYFVDSFTNEKFKGNPAAVCLPNIELDAESMQSIAAEIGFSETAFIKQIKDNTYSIRFFSPKTEIPLCGHATLASSKI
LFSTTSFESIKFININNVELFIEKEADKIKMQFPVYETEETEVPQKLLDALGVSEILEKRYSPNNKIILLEIESARKLAD
LKPDFTALVNSHTGINGVLLTAISDNENFDFHYRYFWPWAGTDEDPVTGGVQTFLTKYWAKKLNKTKLNAFQSSLRTGTM
STELVQDKVYILGEAVIVLEGNFIL

Sequences:

>Translated_265_residues
MKTYFVDSFTNEKFKGNPAAVCLPNIELDAESMQSIAAEIGFSETAFIKQIKDNTYSIRFFSPKTEIPLCGHATLASSKI
LFSTTSFESIKFININNVELFIEKEADKIKMQFPVYETEETEVPQKLLDALGVSEILEKRYSPNNKIILLEIESARKLAD
LKPDFTALVNSHTGINGVLLTAISDNENFDFHYRYFWPWAGTDEDPVTGGVQTFLTKYWAKKLNKTKLNAFQSSLRTGTM
STELVQDKVYILGEAVIVLEGNFIL
>Mature_265_residues
MKTYFVDSFTNEKFKGNPAAVCLPNIELDAESMQSIAAEIGFSETAFIKQIKDNTYSIRFFSPKTEIPLCGHATLASSKI
LFSTTSFESIKFININNVELFIEKEADKIKMQFPVYETEETEVPQKLLDALGVSEILEKRYSPNNKIILLEIESARKLAD
LKPDFTALVNSHTGINGVLLTAISDNENFDFHYRYFWPWAGTDEDPVTGGVQTFLTKYWAKKLNKTKLNAFQSSLRTGTM
STELVQDKVYILGEAVIVLEGNFIL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=285, Percent_Identity=35.4385964912281, Blast_Score=171, Evalue=5e-43,
Organism=Homo sapiens, GI74316009, Length=251, Percent_Identity=33.8645418326693, Blast_Score=146, Evalue=2e-35,
Organism=Escherichia coli, GI1787737, Length=232, Percent_Identity=30.6034482758621, Blast_Score=99, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=33.2258064516129, Blast_Score=147, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=33.2258064516129, Blast_Score=147, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=310, Percent_Identity=31.9354838709677, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17542152, Length=310, Percent_Identity=31.9354838709677, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6321818, Length=284, Percent_Identity=27.4647887323944, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29914; Mature: 29914

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYFVDSFTNEKFKGNPAAVCLPNIELDAESMQSIAAEIGFSETAFIKQIKDNTYSIRF
CCEEEEECCCCCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEE
FSPKTEIPLCGHATLASSKILFSTTSFESIKFININNVELFIEKEADKIKMQFPVYETEE
ECCCCCCCCCCCCHHCCCEEEEEECCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCC
TEVPQKLLDALGVSEILEKRYSPNNKIILLEIESARKLADLKPDFTALVNSHTGINGVLL
HHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCHHHHCCCCCCCCEEEE
TAISDNENFDFHYRYFWPWAGTDEDPVTGGVQTFLTKYWAKKLNKTKLNAFQSSLRTGTM
EEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
STELVQDKVYILGEAVIVLEGNFIL
HHHHHHCEEEEEEEEEEEEECCEEC
>Mature Secondary Structure
MKTYFVDSFTNEKFKGNPAAVCLPNIELDAESMQSIAAEIGFSETAFIKQIKDNTYSIRF
CCEEEEECCCCCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEE
FSPKTEIPLCGHATLASSKILFSTTSFESIKFININNVELFIEKEADKIKMQFPVYETEE
ECCCCCCCCCCCCHHCCCEEEEEECCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCCC
TEVPQKLLDALGVSEILEKRYSPNNKIILLEIESARKLADLKPDFTALVNSHTGINGVLL
HHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCHHHHCCCCCCCCEEEE
TAISDNENFDFHYRYFWPWAGTDEDPVTGGVQTFLTKYWAKKLNKTKLNAFQSSLRTGTM
EEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
STELVQDKVYILGEAVIVLEGNFIL
HHHHHHCEEEEEEEEEEEEECCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]