| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is nreB [H]
Identifier: 146299843
GI number: 146299843
Start: 2472273
End: 2474315
Strand: Direct
Name: nreB [H]
Synonym: Fjoh_2085
Alternate gene names: 146299843
Gene position: 2472273-2474315 (Clockwise)
Preceding gene: 146299842
Following gene: 146299844
Centisome position: 40.55
GC content: 28.05
Gene sequence:
>2043_bases TTGAAATCCCTAAAAACCATTTGTACATTGAAAATTCTTGCCAGAAAAATATTCTTTTTGTCTTTACTAATTCTTTTTTT TTCATGTAAAAAAAGCGATGCTGTTTTATTCGATTCAACTCACATTAGTAGTCTCGAAGAATACCAAAAAGAGGAATATC TGGATTCTATAGTAGATTTGCTAAAATATAAAAAGAACGATTCGATTACCAGAGATTTGTACTTAAAGGCTGCTTCGGAA TATTATGTTATTAATAATCTGAAAAAATCACTAGCCAGCAGCCAAAAAGCGCTAGATCTTTCAAAAAGAGTTAATGACAC TGTAAGAATGGCAAAGGCATTTTATTATGCTGGGGATTGTTACGAAAACTCAAAAAAGGACAGCGCTTATTTTTTTTATT TAAAAGCAGAAAAAATCTATCATAAAATCCATGATTATAATAATGTGGGCAAAATGCTGTTCAACAAAGCATATGTCCTA TTTTATGATGGTAATTATGTTGAATGCGAAATAGAGGTTTCTAAAGCGTTGCAATATTTAAAAAAATCTTCAAATCACGA ATTAATATATTCTTGCAATACCTTAATGGGGAACTGTTTAGAAAAATTAGTAGATTATAATGAAGCATTGCGTTATCATA ATTTAGCGCTTGCTGAATTGAAGAAAATGAAAATTGATGACGAAATTAATAGTTATAATGTTAGTTCTATCATTAATATT TGTAATCTATACGACCTAAAAGGAGAATATTCTAAATCTATTGAGCAGCTGCAAAAATTACTTTCGAAGGATTTAAAAAA GAAATGGCCAAGATTATATGCAAATGTTTTAAGCAACCTGGCTTATTCAAAAACGAAAAATGGAGATTATAAAAATGTTG AAGCTATGTTTTCAGAATCCTTAAGGATTGTTGACAGCATTGGTGTTGAATCTGATATATTATACAAAAAGATCTATATC GGGGAATATTTTTTAACTCAGAAGGACACTGCCAAATCAATTAGTAACATAAAAGAAGCTAATGATCTTGCAATTAAACT AAACAGCAGTAATGAAATTTTAACTTCGTCTAAGCTGCTTTCTAAAATTGATAAAAAAAATGGGCTGTATTATACAAATT ACTATATAAAAGTAAGTGATAGTATAAACAGAGTACAAAGAAAAGCCCATGATAAATATGCAAGAATTGAGTATGAAACC TCAAGGATTGAAGACGAAAATAAAGTTTTGACAAAAAAAAATCTATTCATATTAATTATCTCATTTGTACTGATACTTTT GTTTTTGACTATTCTGATTTTCAGATATTCTAAATATAAGAATAAAGAATTACAGTTTTTAATCAAACAAAAAAAAGCAA ATGAAGAGATCTACAGATTGCTAATCGAGCAAAATGAAAAAATAAACATTGCGAGAGAGAACGAAAAAACCAGAATTGCC AGAGAACTGCATGATGGAATAATGAATAAAATTTATTCGATTCGAATGAATTTAGGCTTTTTTAATTCTAAAACCGATCC GGAGATAGTTGAGAAACGCAAAAGCTATATTTTAGAATTACAAAATGTTGAAAACGAAATAAGAATGATTTCGCATGAGT TAAATCAGAATCCTTTTTTTGAGGCAAATGATTTTAATACATTGTTGATGAATCTTATTCACAATCAAGTAGATATTACA AAAACACAATTTAAATATGTGGTCGATGATTCTATTGATTGGACTGCAGTGCAGAATATTTATAAAATAAATTTATACAG AATTGTTCAGGAATCAATCCTAAACGTCAATAAGTATGCAAATGCAAAAAATTGTCAGATAAAAATTCAGAAAGTAAAAA GCAATTCTCTAAAATTAAGTATTAGTGATGATGGTGAAGGTTTTGATATTAAAACATCCAAAACCGGAATTGGAATCAAT AATATGAAAGACAGAACAATTTCCTTAAAAGGTAAATTTAAAATTAAATCAAAAACAGGTAAAGGAACCAAAATAGATAT AACCTTTAACCTTGACACTATTGTAATTGAAGCTTTAGAATAG
Upstream 100 bases:
>100_bases ACGGTGAACCTAGCAATCCAAAACCTCCTAGAAAATAACAAAAGGAAAAATCTTATGTTTTTTTTGAATAATAGGTTTTT TAAATTTCAATATCATATAT
Downstream 100 bases:
>100_bases TTTTGAATTTTAAGAATCGAAAAAGGTAAAATCTCAAGACGTCTTTAGATTTTTATAAAAACAGATACTCAATGTTTTTT ACGATTATCTGTTAATCAAT
Product: putative signal transduction histidine kinase
Products: NA
Alternate protein names: Nitrogen regulation protein B [H]
Number of amino acids: Translated: 680; Mature: 680
Protein sequence:
>680_residues MKSLKTICTLKILARKIFFLSLLILFFSCKKSDAVLFDSTHISSLEEYQKEEYLDSIVDLLKYKKNDSITRDLYLKAASE YYVINNLKKSLASSQKALDLSKRVNDTVRMAKAFYYAGDCYENSKKDSAYFFYLKAEKIYHKIHDYNNVGKMLFNKAYVL FYDGNYVECEIEVSKALQYLKKSSNHELIYSCNTLMGNCLEKLVDYNEALRYHNLALAELKKMKIDDEINSYNVSSIINI CNLYDLKGEYSKSIEQLQKLLSKDLKKKWPRLYANVLSNLAYSKTKNGDYKNVEAMFSESLRIVDSIGVESDILYKKIYI GEYFLTQKDTAKSISNIKEANDLAIKLNSSNEILTSSKLLSKIDKKNGLYYTNYYIKVSDSINRVQRKAHDKYARIEYET SRIEDENKVLTKKNLFILIISFVLILLFLTILIFRYSKYKNKELQFLIKQKKANEEIYRLLIEQNEKINIARENEKTRIA RELHDGIMNKIYSIRMNLGFFNSKTDPEIVEKRKSYILELQNVENEIRMISHELNQNPFFEANDFNTLLMNLIHNQVDIT KTQFKYVVDDSIDWTAVQNIYKINLYRIVQESILNVNKYANAKNCQIKIQKVKSNSLKLSISDDGEGFDIKTSKTGIGIN NMKDRTISLKGKFKIKSKTGKGTKIDITFNLDTIVIEALE
Sequences:
>Translated_680_residues MKSLKTICTLKILARKIFFLSLLILFFSCKKSDAVLFDSTHISSLEEYQKEEYLDSIVDLLKYKKNDSITRDLYLKAASE YYVINNLKKSLASSQKALDLSKRVNDTVRMAKAFYYAGDCYENSKKDSAYFFYLKAEKIYHKIHDYNNVGKMLFNKAYVL FYDGNYVECEIEVSKALQYLKKSSNHELIYSCNTLMGNCLEKLVDYNEALRYHNLALAELKKMKIDDEINSYNVSSIINI CNLYDLKGEYSKSIEQLQKLLSKDLKKKWPRLYANVLSNLAYSKTKNGDYKNVEAMFSESLRIVDSIGVESDILYKKIYI GEYFLTQKDTAKSISNIKEANDLAIKLNSSNEILTSSKLLSKIDKKNGLYYTNYYIKVSDSINRVQRKAHDKYARIEYET SRIEDENKVLTKKNLFILIISFVLILLFLTILIFRYSKYKNKELQFLIKQKKANEEIYRLLIEQNEKINIARENEKTRIA RELHDGIMNKIYSIRMNLGFFNSKTDPEIVEKRKSYILELQNVENEIRMISHELNQNPFFEANDFNTLLMNLIHNQVDIT KTQFKYVVDDSIDWTAVQNIYKINLYRIVQESILNVNKYANAKNCQIKIQKVKSNSLKLSISDDGEGFDIKTSKTGIGIN NMKDRTISLKGKFKIKSKTGKGTKIDITFNLDTIVIEALE >Mature_680_residues MKSLKTICTLKILARKIFFLSLLILFFSCKKSDAVLFDSTHISSLEEYQKEEYLDSIVDLLKYKKNDSITRDLYLKAASE YYVINNLKKSLASSQKALDLSKRVNDTVRMAKAFYYAGDCYENSKKDSAYFFYLKAEKIYHKIHDYNNVGKMLFNKAYVL FYDGNYVECEIEVSKALQYLKKSSNHELIYSCNTLMGNCLEKLVDYNEALRYHNLALAELKKMKIDDEINSYNVSSIINI CNLYDLKGEYSKSIEQLQKLLSKDLKKKWPRLYANVLSNLAYSKTKNGDYKNVEAMFSESLRIVDSIGVESDILYKKIYI GEYFLTQKDTAKSISNIKEANDLAIKLNSSNEILTSSKLLSKIDKKNGLYYTNYYIKVSDSINRVQRKAHDKYARIEYET SRIEDENKVLTKKNLFILIISFVLILLFLTILIFRYSKYKNKELQFLIKQKKANEEIYRLLIEQNEKINIARENEKTRIA RELHDGIMNKIYSIRMNLGFFNSKTDPEIVEKRKSYILELQNVENEIRMISHELNQNPFFEANDFNTLLMNLIHNQVDIT KTQFKYVVDDSIDWTAVQNIYKINLYRIVQESILNVNKYANAKNCQIKIQKVKSNSLKLSISDDGEGFDIKTSKTGIGIN NMKDRTISLKGKFKIKSKTGKGTKIDITFNLDTIVIEALE
Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxyg
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR011712 - InterPro: IPR005467 - InterPro: IPR017203 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 79252; Mature: 79252
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLKTICTLKILARKIFFLSLLILFFSCKKSDAVLFDSTHISSLEEYQKEEYLDSIVDL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH LKYKKNDSITRDLYLKAASEYYVINNLKKSLASSQKALDLSKRVNDTVRMAKAFYYAGDC HHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH YENSKKDSAYFFYLKAEKIYHKIHDYNNVGKMLFNKAYVLFYDGNYVECEIEVSKALQYL HCCCCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHH KKSSNHELIYSCNTLMGNCLEKLVDYNEALRYHNLALAELKKMKIDDEINSYNVSSIINI HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH CNLYDLKGEYSKSIEQLQKLLSKDLKKKWPRLYANVLSNLAYSKTKNGDYKNVEAMFSES HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LRIVDSIGVESDILYKKIYIGEYFLTQKDTAKSISNIKEANDLAIKLNSSNEILTSSKLL HHHHHHCCCCCHHHHHEEEECCEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH SKIDKKNGLYYTNYYIKVSDSINRVQRKAHDKYARIEYETSRIEDENKVLTKKNLFILII HHHHHCCCEEEEEEEEEECCHHHHHHHHHCCCCEEEEEHHHHCCCCCCEEECCCHHHHHH SFVLILLFLTILIFRYSKYKNKELQFLIKQKKANEEIYRLLIEQNEKINIARENEKTRIA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHH RELHDGIMNKIYSIRMNLGFFNSKTDPEIVEKRKSYILELQNVENEIRMISHELNQNPFF HHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EANDFNTLLMNLIHNQVDITKTQFKYVVDDSIDWTAVQNIYKINLYRIVQESILNVNKYA CCCCHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NAKNCQIKIQKVKSNSLKLSISDDGEGFDIKTSKTGIGINNMKDRTISLKGKFKIKSKTG CCCCCEEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCC KGTKIDITFNLDTIVIEALE CCCEEEEEEECCEEEEEECC >Mature Secondary Structure MKSLKTICTLKILARKIFFLSLLILFFSCKKSDAVLFDSTHISSLEEYQKEEYLDSIVDL CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH LKYKKNDSITRDLYLKAASEYYVINNLKKSLASSQKALDLSKRVNDTVRMAKAFYYAGDC HHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH YENSKKDSAYFFYLKAEKIYHKIHDYNNVGKMLFNKAYVLFYDGNYVECEIEVSKALQYL HCCCCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHH KKSSNHELIYSCNTLMGNCLEKLVDYNEALRYHNLALAELKKMKIDDEINSYNVSSIINI HCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH CNLYDLKGEYSKSIEQLQKLLSKDLKKKWPRLYANVLSNLAYSKTKNGDYKNVEAMFSES HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LRIVDSIGVESDILYKKIYIGEYFLTQKDTAKSISNIKEANDLAIKLNSSNEILTSSKLL HHHHHHCCCCCHHHHHEEEECCEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH SKIDKKNGLYYTNYYIKVSDSINRVQRKAHDKYARIEYETSRIEDENKVLTKKNLFILII HHHHHCCCEEEEEEEEEECCHHHHHHHHHCCCCEEEEEHHHHCCCCCCEEECCCHHHHHH SFVLILLFLTILIFRYSKYKNKELQFLIKQKKANEEIYRLLIEQNEKINIARENEKTRIA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCHHHHHH RELHDGIMNKIYSIRMNLGFFNSKTDPEIVEKRKSYILELQNVENEIRMISHELNQNPFF HHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EANDFNTLLMNLIHNQVDITKTQFKYVVDDSIDWTAVQNIYKINLYRIVQESILNVNKYA CCCCHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NAKNCQIKIQKVKSNSLKLSISDDGEGFDIKTSKTGIGINNMKDRTISLKGKFKIKSKTG CCCCCEEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCC KGTKIDITFNLDTIVIEALE CCCEEEEEEECCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA