| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299767
Identifier: 146299767
GI number: 146299767
Start: 2341872
End: 2343023
Strand: Direct
Name: 146299767
Synonym: Fjoh_2007
Alternate gene names: NA
Gene position: 2341872-2343023 (Clockwise)
Preceding gene: 146299765
Following gene: 146299768
Centisome position: 38.41
GC content: 33.77
Gene sequence:
>1152_bases ATGACAGTAAAAAAGTCAGAGAGACTAATTGTTAAATTTATCACAAATCAGGCGAGTCAGGAGGAAATCGAAGCCTTGAC CGAATGGTTAAAAGAGGATGAAAATCAGCTTGTGTTTAAGGATTTTGTAAAAACCAATTACGCAATAGATACCGCTTTGA ACAATTTTGATTCTACCGAAGTCAGAAAACAACTTTCAGAAAGAATCAGAAAAGAAAATAACGTTTTTTATAAAAGAAGA TTTTCATCGTATTACAAATATGCGGCGATTTTGATCGTTGCTTTGGGCGGATTTTATTTTTACAAAAATTCAACCACTGC AATACAGTCAAAACAAAATGTAATAATTCCGAGAGAAGATGAAATTGTGCTGCAGCTGGGTGACGAATCGCAGAATCTTG ATCCAAACGAAGCCAGAACTATAACTGATAAAGACGGAAATGTAATTGGAAAACAGGAAAAAGACAGATTGGTTTATACG AAAGCTTATGCCAAAGGCGCATTAGTTTACAATACAATCAAAATTCCGTACGGAAAAAAGTTTGAAGTCCAATTGTCAGA TGGGACACTTGTGCATTTAAATGCAGGAACATCGCTGCGATATCCGGTTCAGTTTGTTAAAAATCAAAACCGACAAGTTT ATCTTCTTGGAGAAGCATTTTTTGAAGTTGAAAAAGACAAAGAACATCCGTTTGATGTAAACACGCAGAATGTAAATGTT GAGGTCTTGGGAACTAAATTTAATGTAGATACGTATAGTGAAAATCCAAGAACTGATGTTGTTTTGGTTGAAGGAAAAGT GTCTTTATACAAAGATCAGAAAACCAAAGAAAACCAAGTGTATTTAAAACCTGGAGAAAAAGGCTCAAACGAAAGAGGAC AGTCAGAAATTACAACAGAGCAGGTTAACACAGAATATTATACAGCTTGGATAAAAGGAAGTTTAGTATTCAAAAATGCT TCGTTTGATGATATTATTAAAAAACTGGAACGACGTTACAATGTAACTTTCATCAATAAAAACAAAGTACTTGGAAAAGA AATTTTTAACGCCCGATTTGATAATGAACCCATTGAAGTGGTGCTCAAATATTTCAGCGACAGTTATGCTATTGATTATA TCATTGACAGAGACAAGATTACAATAAAGTAA
Upstream 100 bases:
>100_bases AAACTTGTGAAAAATAAAAAATTCATCAAAATGAAAAAAACTTTATCAAATTGTTAGGGTTTTGTTTTTTGGCTTCGTAA TAATATTAAAAATAACTAAA
Downstream 100 bases:
>100_bases ATTATCAATTAACAATTCATAATTAACAATTAAAAAAACGCCTATGTAACAAAAATCCAAAGAAGAAGGATCGGCATTAG ATAAAAAAAACCGGAAAATG
Product: FecR anti-FecI sigma factor
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MTVKKSERLIVKFITNQASQEEIEALTEWLKEDENQLVFKDFVKTNYAIDTALNNFDSTEVRKQLSERIRKENNVFYKRR FSSYYKYAAILIVALGGFYFYKNSTTAIQSKQNVIIPREDEIVLQLGDESQNLDPNEARTITDKDGNVIGKQEKDRLVYT KAYAKGALVYNTIKIPYGKKFEVQLSDGTLVHLNAGTSLRYPVQFVKNQNRQVYLLGEAFFEVEKDKEHPFDVNTQNVNV EVLGTKFNVDTYSENPRTDVVLVEGKVSLYKDQKTKENQVYLKPGEKGSNERGQSEITTEQVNTEYYTAWIKGSLVFKNA SFDDIIKKLERRYNVTFINKNKVLGKEIFNARFDNEPIEVVLKYFSDSYAIDYIIDRDKITIK
Sequences:
>Translated_383_residues MTVKKSERLIVKFITNQASQEEIEALTEWLKEDENQLVFKDFVKTNYAIDTALNNFDSTEVRKQLSERIRKENNVFYKRR FSSYYKYAAILIVALGGFYFYKNSTTAIQSKQNVIIPREDEIVLQLGDESQNLDPNEARTITDKDGNVIGKQEKDRLVYT KAYAKGALVYNTIKIPYGKKFEVQLSDGTLVHLNAGTSLRYPVQFVKNQNRQVYLLGEAFFEVEKDKEHPFDVNTQNVNV EVLGTKFNVDTYSENPRTDVVLVEGKVSLYKDQKTKENQVYLKPGEKGSNERGQSEITTEQVNTEYYTAWIKGSLVFKNA SFDDIIKKLERRYNVTFINKNKVLGKEIFNARFDNEPIEVVLKYFSDSYAIDYIIDRDKITIK >Mature_382_residues TVKKSERLIVKFITNQASQEEIEALTEWLKEDENQLVFKDFVKTNYAIDTALNNFDSTEVRKQLSERIRKENNVFYKRRF SSYYKYAAILIVALGGFYFYKNSTTAIQSKQNVIIPREDEIVLQLGDESQNLDPNEARTITDKDGNVIGKQEKDRLVYTK AYAKGALVYNTIKIPYGKKFEVQLSDGTLVHLNAGTSLRYPVQFVKNQNRQVYLLGEAFFEVEKDKEHPFDVNTQNVNVE VLGTKFNVDTYSENPRTDVVLVEGKVSLYKDQKTKENQVYLKPGEKGSNERGQSEITTEQVNTEYYTAWIKGSLVFKNAS FDDIIKKLERRYNVTFINKNKVLGKEIFNARFDNEPIEVVLKYFSDSYAIDYIIDRDKITIK
Specific function: Unknown
COG id: COG3712
COG function: function code PT; Fe2+-dicitrate sensor, membrane component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44439; Mature: 44307
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKKSERLIVKFITNQASQEEIEALTEWLKEDENQLVFKDFVKTNYAIDTALNNFDSTE CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEHHHHHHCCEEEEHHHCCCCHHH VRKQLSERIRKENNVFYKRRFSSYYKYAAILIVALGGFYFYKNSTTAIQSKQNVIIPRED HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCEECCCCC EIVLQLGDESQNLDPNEARTITDKDGNVIGKQEKDRLVYTKAYAKGALVYNTIKIPYGKK CEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHCCCEEEEEEEECCCCCE FEVQLSDGTLVHLNAGTSLRYPVQFVKNQNRQVYLLGEAFFEVEKDKEHPFDVNTQNVNV EEEEECCCEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEE EVLGTKFNVDTYSENPRTDVVLVEGKVSLYKDQKTKENQVYLKPGEKGSNERGQSEITTE EEEEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCHH QVNTEYYTAWIKGSLVFKNASFDDIIKKLERRYNVTFINKNKVLGKEIFNARFDNEPIEV HCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCCHHHH VLKYFSDSYAIDYIIDRDKITIK HHHHHCCCEEEEEEEECCEEEEC >Mature Secondary Structure TVKKSERLIVKFITNQASQEEIEALTEWLKEDENQLVFKDFVKTNYAIDTALNNFDSTE CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEHHHHHHCCEEEEHHHCCCCHHH VRKQLSERIRKENNVFYKRRFSSYYKYAAILIVALGGFYFYKNSTTAIQSKQNVIIPRED HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCEEEEECCCEEEECCCCEECCCCC EIVLQLGDESQNLDPNEARTITDKDGNVIGKQEKDRLVYTKAYAKGALVYNTIKIPYGKK CEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHCCCEEEEEEEECCCCCE FEVQLSDGTLVHLNAGTSLRYPVQFVKNQNRQVYLLGEAFFEVEKDKEHPFDVNTQNVNV EEEEECCCEEEEEECCCCCCCCHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEE EVLGTKFNVDTYSENPRTDVVLVEGKVSLYKDQKTKENQVYLKPGEKGSNERGQSEITTE EEEEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCHH QVNTEYYTAWIKGSLVFKNASFDDIIKKLERRYNVTFINKNKVLGKEIFNARFDNEPIEV HCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCCHHHH VLKYFSDSYAIDYIIDRDKITIK HHHHHCCCEEEEEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA