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The map label for this gene is ydiF [H]

Identifier: 146299620

GI number: 146299620

Start: 2143594

End: 2145507

Strand: Direct

Name: ydiF [H]

Synonym: Fjoh_1860

Alternate gene names: 146299620

Gene position: 2143594-2145507 (Clockwise)

Preceding gene: 146299618

Following gene: 146299622

Centisome position: 35.16

GC content: 34.38

Gene sequence:

>1914_bases
ATGCTTAATATACACAATCTTTCCGTTTCTTTTGGAGGAACATATTTATTTGAAGAAGTTACTTTTCGTTTAGGAGCCGG
AGACCGAGTTGGTCTTGTTGGTAAAAACGGAGCTGGTAAATCTACAATGCTTAAAATGCTGGCAGGAGATTTTGCACCAG
ATTCAGGTGTTATCTCACAAGAGAAAGATATCAGAATGGGGTTTTTACGCCAGGATATCGATTTTGAACAAGGAAGGACT
GTATTGGAAGAAGCGTATGAAGCTTTTACAGAAATTAAGGTTGTAGAAAAAAAACTGGAACAAATCAATCATCAATTAGT
TACAAGAACTGATTATGAAAGTGAAGAATACAGTCAGATTATCGAAGATTTATCTGATTATACACATCGTTTTGAACTTC
TTGGCGGTTATAATTATGTTGGAGATACAGAAAAAATTCTTTTAGGACTAGGTTTTAAAAGAGAAGTCTTTAATAACCAA
ACTGAAACATTTTCCGGAGGATGGAGAATGCGTATCGAATTGGCAAAATTATTATTGCAGGCAAATGATGTGTTGCTTCT
GGATGAGCCTACCAACCACTTAGATATTGAAAGTATTATTTGGTTAGAGAATTTCCTTCGCAATTATCCGGGAGTTGTGG
TAATTGTATCGCACGATAAAATGTTTTTGGATAATGTTACCAATAGAACAATTGAAATTTCTTTAGGAAAAGCATACGAT
TTTAATAAACCATATTCGCAGTATTTAGAATTGCGTCATGAAATACGCGAAAAGCAATTAGCGACTCAAAAGAATCAGCA
GAAAAAAATTGAAGAGACAGAAAAATTAATCGAGAAGTTCCGTGCAAAAGCTTCAAAAGCTTCGATGGCGCAATCGTTGA
TTAAAAAGTTAGATAAAGTAGAAAGAATAGAAGTTGATGAAGATGACAATTCTGTAATGAATATTTCTTTCCCGGTTTCA
AAAGAACCTGGAAAAGTTGTAATCGAGGCAGAACATGTTACAAAAGCTTACGGAGACAAAACGATTCTAAAAGATATCAG
TTTATTGGTTGAAAGAGGAAGTAAAATTGCATTCGTTGGACAAAACGGTCAAGGAAAATCGACTTTCATTAAAGCGTTGG
TTAACGAATTTGAGTATGATGGAACTATTAAATTAGGGCACAATGTACAATTAGGATATTTTGCTCAAAATCAAGCAGAA
TATTTGGATGGTGAAATTACATTGCTTCAAACTATGGAAGATGCAGCTACAGATACAAATCGTATGAAAGTACGTGATAT
GCTGGGGTCATTTTTGTTTCGTGGAGATGATGTAGAGAAAAAAGTAAAAGTACTTTCTGGAGGAGAACGCAACCGTTTGG
CGCTTTGTAAATTGTTATTGCAGCCAATTAACGTTCTGTTGATGGATGAGCCTACCAACCACTTAGATATTAAATCTAAA
AACGTTTTAAAAGCGGCACTTCAAAAATTTGGCGGTACATTATTATTAGTTTCTCACGATAGAGATTTTCTACAGGGAAT
GTCGAATATTGTTTACGAATTTAAAGATCAAAAGATCAAAGAATATCTGGGCGATATTAATTTCTTCTTAGAACAGCGTA
ATCTTGAAAACATGCGCGAAGTGGAGAAAAAAGATGTTGTAAAAACAACAGCAACTAAAGAAACCACAAAAGCATCTTAT
GAAGATCAGAAAAAAGGAAAAGCACTTCAAAACCGATTAAGCAAAATTGAAAGTCAGATTCAGCAGTTAGAAAAAGACAT
TCAGCACGACGATAAAATGCTCGAAACGAATTGCGATAAACATATCGAAGATGCATCGTTTTTTACGGCTTACAACAAAA
AGAAAGAAGACCTGGAACAATTGCTTATAGATTGGGAAATTGTTCAGGAGGAGATTGATAGTTTTAATGCTTAA

Upstream 100 bases:

>100_bases
AAATACTATTTAGTTTGGATCCTTTTTTTAACATTTGCAAAAAATTTAAACAAAGGTACGATTTTTCAACCTTTACTGCT
GATAACAATAGTTATAAATT

Downstream 100 bases:

>100_bases
TTAGTTTCAGTCACAGTTTTCAGTAAATTAAACAGATATAGACCTTTGTTAAAGTTTTAAATTTTGACAAAGGTTTTTTT
TACGTCAAAAAAATAAAAAA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MLNIHNLSVSFGGTYLFEEVTFRLGAGDRVGLVGKNGAGKSTMLKMLAGDFAPDSGVISQEKDIRMGFLRQDIDFEQGRT
VLEEAYEAFTEIKVVEKKLEQINHQLVTRTDYESEEYSQIIEDLSDYTHRFELLGGYNYVGDTEKILLGLGFKREVFNNQ
TETFSGGWRMRIELAKLLLQANDVLLLDEPTNHLDIESIIWLENFLRNYPGVVVIVSHDKMFLDNVTNRTIEISLGKAYD
FNKPYSQYLELRHEIREKQLATQKNQQKKIEETEKLIEKFRAKASKASMAQSLIKKLDKVERIEVDEDDNSVMNISFPVS
KEPGKVVIEAEHVTKAYGDKTILKDISLLVERGSKIAFVGQNGQGKSTFIKALVNEFEYDGTIKLGHNVQLGYFAQNQAE
YLDGEITLLQTMEDAATDTNRMKVRDMLGSFLFRGDDVEKKVKVLSGGERNRLALCKLLLQPINVLLMDEPTNHLDIKSK
NVLKAALQKFGGTLLLVSHDRDFLQGMSNIVYEFKDQKIKEYLGDINFFLEQRNLENMREVEKKDVVKTTATKETTKASY
EDQKKGKALQNRLSKIESQIQQLEKDIQHDDKMLETNCDKHIEDASFFTAYNKKKEDLEQLLIDWEIVQEEIDSFNA

Sequences:

>Translated_637_residues
MLNIHNLSVSFGGTYLFEEVTFRLGAGDRVGLVGKNGAGKSTMLKMLAGDFAPDSGVISQEKDIRMGFLRQDIDFEQGRT
VLEEAYEAFTEIKVVEKKLEQINHQLVTRTDYESEEYSQIIEDLSDYTHRFELLGGYNYVGDTEKILLGLGFKREVFNNQ
TETFSGGWRMRIELAKLLLQANDVLLLDEPTNHLDIESIIWLENFLRNYPGVVVIVSHDKMFLDNVTNRTIEISLGKAYD
FNKPYSQYLELRHEIREKQLATQKNQQKKIEETEKLIEKFRAKASKASMAQSLIKKLDKVERIEVDEDDNSVMNISFPVS
KEPGKVVIEAEHVTKAYGDKTILKDISLLVERGSKIAFVGQNGQGKSTFIKALVNEFEYDGTIKLGHNVQLGYFAQNQAE
YLDGEITLLQTMEDAATDTNRMKVRDMLGSFLFRGDDVEKKVKVLSGGERNRLALCKLLLQPINVLLMDEPTNHLDIKSK
NVLKAALQKFGGTLLLVSHDRDFLQGMSNIVYEFKDQKIKEYLGDINFFLEQRNLENMREVEKKDVVKTTATKETTKASY
EDQKKGKALQNRLSKIESQIQQLEKDIQHDDKMLETNCDKHIEDASFFTAYNKKKEDLEQLLIDWEIVQEEIDSFNA
>Mature_637_residues
MLNIHNLSVSFGGTYLFEEVTFRLGAGDRVGLVGKNGAGKSTMLKMLAGDFAPDSGVISQEKDIRMGFLRQDIDFEQGRT
VLEEAYEAFTEIKVVEKKLEQINHQLVTRTDYESEEYSQIIEDLSDYTHRFELLGGYNYVGDTEKILLGLGFKREVFNNQ
TETFSGGWRMRIELAKLLLQANDVLLLDEPTNHLDIESIIWLENFLRNYPGVVVIVSHDKMFLDNVTNRTIEISLGKAYD
FNKPYSQYLELRHEIREKQLATQKNQQKKIEETEKLIEKFRAKASKASMAQSLIKKLDKVERIEVDEDDNSVMNISFPVS
KEPGKVVIEAEHVTKAYGDKTILKDISLLVERGSKIAFVGQNGQGKSTFIKALVNEFEYDGTIKLGHNVQLGYFAQNQAE
YLDGEITLLQTMEDAATDTNRMKVRDMLGSFLFRGDDVEKKVKVLSGGERNRLALCKLLLQPINVLLMDEPTNHLDIKSK
NVLKAALQKFGGTLLLVSHDRDFLQGMSNIVYEFKDQKIKEYLGDINFFLEQRNLENMREVEKKDVVKTTATKETTKASY
EDQKKGKALQNRLSKIESQIQQLEKDIQHDDKMLETNCDKHIEDASFFTAYNKKKEDLEQLLIDWEIVQEEIDSFNA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=508, Percent_Identity=31.1023622047244, Blast_Score=245, Evalue=1e-64,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=30.9833024118738, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=30.9833024118738, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI10947135, Length=538, Percent_Identity=28.2527881040892, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI69354671, Length=538, Percent_Identity=28.2527881040892, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI148612844, Length=208, Percent_Identity=31.25, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI255708477, Length=208, Percent_Identity=31.25, Blast_Score=70, Evalue=7e-12,
Organism=Escherichia coli, GI1789751, Length=645, Percent_Identity=31.6279069767442, Blast_Score=340, Evalue=2e-94,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=34.5018450184502, Blast_Score=328, Evalue=9e-91,
Organism=Escherichia coli, GI2367384, Length=521, Percent_Identity=31.2859884836852, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1787182, Length=642, Percent_Identity=30.6853582554517, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=28.1512605042017, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=188, Percent_Identity=28.1914893617021, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=265, Percent_Identity=23.3962264150943, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=536, Percent_Identity=30.9701492537313, Blast_Score=238, Evalue=5e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=29.3040293040293, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17553372, Length=537, Percent_Identity=28.8640595903166, Blast_Score=226, Evalue=3e-59,
Organism=Saccharomyces cerevisiae, GI6321121, Length=531, Percent_Identity=31.0734463276836, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6320874, Length=539, Percent_Identity=29.3135435992579, Blast_Score=220, Evalue=4e-58,
Organism=Saccharomyces cerevisiae, GI6325030, Length=403, Percent_Identity=26.0545905707196, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=416, Percent_Identity=24.0384615384615, Blast_Score=114, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=411, Percent_Identity=24.8175182481752, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=31.5985130111524, Blast_Score=255, Evalue=6e-68,
Organism=Drosophila melanogaster, GI24641342, Length=546, Percent_Identity=30.4029304029304, Blast_Score=250, Evalue=2e-66,
Organism=Drosophila melanogaster, GI24642252, Length=536, Percent_Identity=30.2238805970149, Blast_Score=239, Evalue=4e-63,
Organism=Drosophila melanogaster, GI18859989, Length=536, Percent_Identity=30.2238805970149, Blast_Score=239, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72981; Mature: 72981

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIHNLSVSFGGTYLFEEVTFRLGAGDRVGLVGKNGAGKSTMLKMLAGDFAPDSGVISQ
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
EKDIRMGFLRQDIDFEQGRTVLEEAYEAFTEIKVVEKKLEQINHQLVTRTDYESEEYSQI
CCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IEDLSDYTHRFELLGGYNYVGDTEKILLGLGFKREVFNNQTETFSGGWRMRIELAKLLLQ
HHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCHHHHHCCCCCCCCCCCEEHHHHHHHHHH
ANDVLLLDEPTNHLDIESIIWLENFLRNYPGVVVIVSHDKMFLDNVTNRTIEISLGKAYD
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCEEEEEECCCCC
FNKPYSQYLELRHEIREKQLATQKNQQKKIEETEKLIEKFRAKASKASMAQSLIKKLDKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERIEVDEDDNSVMNISFPVSKEPGKVVIEAEHVTKAYGDKTILKDISLLVERGSKIAFVG
HCCCCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHCCCEEEEEE
QNGQGKSTFIKALVNEFEYDGTIKLGHNVQLGYFAQNQAEYLDGEITLLQTMEDAATDTN
CCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCHHHHCCCCEEEEHHHHHHCCCCH
RMKVRDMLGSFLFRGDDVEKKVKVLSGGERNRLALCKLLLQPINVLLMDEPTNHLDIKSK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCH
NVLKAALQKFGGTLLLVSHDRDFLQGMSNIVYEFKDQKIKEYLGDINFFLEQRNLENMRE
HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VEKKDVVKTTATKETTKASYEDQKKGKALQNRLSKIESQIQQLEKDIQHDDKMLETNCDK
HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HIEDASFFTAYNKKKEDLEQLLIDWEIVQEEIDSFNA
HHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNIHNLSVSFGGTYLFEEVTFRLGAGDRVGLVGKNGAGKSTMLKMLAGDFAPDSGVISQ
CCEEEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
EKDIRMGFLRQDIDFEQGRTVLEEAYEAFTEIKVVEKKLEQINHQLVTRTDYESEEYSQI
CCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IEDLSDYTHRFELLGGYNYVGDTEKILLGLGFKREVFNNQTETFSGGWRMRIELAKLLLQ
HHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCHHHHHCCCCCCCCCCCEEHHHHHHHHHH
ANDVLLLDEPTNHLDIESIIWLENFLRNYPGVVVIVSHDKMFLDNVTNRTIEISLGKAYD
CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCEEEEEECCCCC
FNKPYSQYLELRHEIREKQLATQKNQQKKIEETEKLIEKFRAKASKASMAQSLIKKLDKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERIEVDEDDNSVMNISFPVSKEPGKVVIEAEHVTKAYGDKTILKDISLLVERGSKIAFVG
HCCCCCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHCCCEEEEEE
QNGQGKSTFIKALVNEFEYDGTIKLGHNVQLGYFAQNQAEYLDGEITLLQTMEDAATDTN
CCCCCHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCHHHHCCCCEEEEHHHHHHCCCCH
RMKVRDMLGSFLFRGDDVEKKVKVLSGGERNRLALCKLLLQPINVLLMDEPTNHLDIKSK
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCH
NVLKAALQKFGGTLLLVSHDRDFLQGMSNIVYEFKDQKIKEYLGDINFFLEQRNLENMRE
HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VEKKDVVKTTATKETTKASYEDQKKGKALQNRLSKIESQIQQLEKDIQHDDKMLETNCDK
HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
HIEDASFFTAYNKKKEDLEQLLIDWEIVQEEIDSFNA
HHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]