| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is dnaG [H]
Identifier: 146299550
GI number: 146299550
Start: 2069522
End: 2071636
Strand: Direct
Name: dnaG [H]
Synonym: Fjoh_1790
Alternate gene names: 146299550
Gene position: 2069522-2071636 (Clockwise)
Preceding gene: 146299549
Following gene: 146299553
Centisome position: 33.94
GC content: 36.03
Gene sequence:
>2115_bases TTGCGTACTTTTACAGGCTCTAATTTTTTAAAAATAATTTACGTTTTGATTTCACAAAGTACAATAGACGCTGTTTTTGA AACCGCTCGAGTAGAGGAGGTTATTGGCGATTTTGTCAATTTAAAACGTGCAGGAAGTAACTACAAAGGTCTGAGTCCGT TTTCAGATGAGCGCTCACCATCGTTTATGGTTTCGCCTGCAAAAGGAATCTGGAAAGATTTTAGTTCCGGAAAAGGCGGT AACTCAGTAGCCTTTTTGATGGAACACTCTCATTTCACCTATCCTGAAGCAATTCGGTATCTGGCTAAAAAATACAATAT CGAAATTGAAGAAACCGAACAAACGGATGCTGAAAAAGCAATGACCGATGTTCGTGAAAGTATGTATTTGGTTTCAGAAT TTGCTGCGAAGTATTTTCAGGATGTTTTAGTTAATTCTGAAGAAGGAAAAGCAATTGGTTTATCTTACTTTAAAGAAAGA GGATTTACTAATGAAACCATCAAGAAATTTGCTTTAGGATATTCTCCTGAAACCTGGGATGCTTTAACAAAAGAGGCTCT GGGAAAAGGGTATAAATTAGAATTTCTGGAAAGCACAGGTTTAACCATTGCAAGAGAAGATCGTCCTTTTGACCGTTTTA AAGGTCGTGTAATGTTCCCAATTCACAGTATGTCGGGACGCGTTTTGGGTTTTGGAGGACGTATTTTAACCAACGATAAA AAAGCAGCAAAATACCTCAATTCGCCAGAAAGTGATATTTACCATAAAAGTAAAGTTCTCTACGGAATTTTTCAGGCAAA ACAATCTATTGCCAAACTAAATAATTGTTATTTAGTAGAAGGTTATACAGATGTTATTCAGTTTAATCAGGCTGGAATTG AGAACGTTGTGGCTTCTTCCGGAACTGCTTTGACGCCGGATCAAATTAGACTTGTTAATCGTTTAACTAAAAATATTACA GTACTTTTTGACGGAGATGCGGCCGGACTTAGAGCTTCTATTCGTGGAATCGATTTGATTTTGGAAGAAGGGATGAATGT AAGGGTCTGCGCCTTTCCTGATGGAGAAGATCCGGATAGTTTTGCCCGAAAAAATTCACATGATGATCTGGTGGCGTATT TGGAAAGCAACAGTAAAGATTTTATACAATTTAAAGCTTCAATCCTGATGGGAGAAGCTAAAAATGATCCTATAAAAAAA GCCGATTTGATTCGTGATATGGTCACGAGTATTTCTAAAATTCCAGATCGTATTCAGCGAGAAGTCTATATTCAGGAATG TGCCCGAATCATGGAAATCTCTGAGCAGGTTTTGGTGAGTACTCTGGCACAGCTGGTTCAAAAAGATCTTGCCGAAGCAA ATAAAAAGCAAAAACAGGAACAAAAACCTTTTCAGGTTTTTAGAAATCCGCCGCCAAATACAGGCTTTTCAGGAGGAGAT CCGGAAGATCCAAGAACAGGACCGCCTGATGGTTATTATCCGGAAGAACCGGGTTATCCACAGGAAACAGCAGAAAAAGT AGATATTTTGTATGGCTTTGAAAGAAAAGTTATAGAGATATTATTGCTGTACGGAAGCGTAGAAGAAGATTTTGAAGATG TTTTTTTAAAAGCTGATGAAGAAGGAAATGTTAAAGAGGTAAGTGAAAAGCGAAGGTATAAGGTTTATGAAAAAATTTAT CTGAGTCTGCAGGAAGACGAGGTAGAACTATCAAATGCTCTTTTTCAGAATATTTTTTCAGGATTAATTGATTATTATAA TCAAAACGAAACCTTTAGTCTGGATAAATATTTAATGCACCTCAATCCTGATTTTGCTCAGGAAGTAACCAATATTTTAA TGGAAGATGAAAAAGTTACCATTCATAATTGGGAAGGGCAGAATATTTTTCCGAAACATAAAAACGTAACAATTGAACAA AATGTTTCAGATACCATATTTTCGATGCGATGGTTTTTAGTTTCAAAAATTATCCATGATTTGAAACATTCATTAATTTC TGATCCGCAGGAAGATAATTCTGAATTATTGATGATGGTGGTCGATTATTCTAAATTGCTGAATAATTTTTCAAAAAAAT TAGGAAGAGTAGTAGTTCCTTACCATGGCGGATAA
Upstream 100 bases:
>100_bases TTTAGGATTACGTCTCGATTTAAATTAGAAATAAAGTTGAGTTTAGTTAGTAGAAAAAGTGTTTCGAAAGAGGCACTTTT TTTGTAAATTCAGGTTGGAT
Downstream 100 bases:
>100_bases AAATCAAAAAGCTCTATACTGATTAACAATATAGAGCTTTTTTTATGGTTGATGATTTACGAAAGTAAATCAGGATACCA CCGAAATTAAATAATTTCTA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MRTFTGSNFLKIIYVLISQSTIDAVFETARVEEVIGDFVNLKRAGSNYKGLSPFSDERSPSFMVSPAKGIWKDFSSGKGG NSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKAMTDVRESMYLVSEFAAKYFQDVLVNSEEGKAIGLSYFKER GFTNETIKKFALGYSPETWDALTKEALGKGYKLEFLESTGLTIAREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDK KAAKYLNSPESDIYHKSKVLYGIFQAKQSIAKLNNCYLVEGYTDVIQFNQAGIENVVASSGTALTPDQIRLVNRLTKNIT VLFDGDAAGLRASIRGIDLILEEGMNVRVCAFPDGEDPDSFARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKK ADLIRDMVTSISKIPDRIQREVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGFSGGD PEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFLKADEEGNVKEVSEKRRYKVYEKIY LSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDKYLMHLNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQ NVSDTIFSMRWFLVSKIIHDLKHSLISDPQEDNSELLMMVVDYSKLLNNFSKKLGRVVVPYHGG
Sequences:
>Translated_704_residues MRTFTGSNFLKIIYVLISQSTIDAVFETARVEEVIGDFVNLKRAGSNYKGLSPFSDERSPSFMVSPAKGIWKDFSSGKGG NSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKAMTDVRESMYLVSEFAAKYFQDVLVNSEEGKAIGLSYFKER GFTNETIKKFALGYSPETWDALTKEALGKGYKLEFLESTGLTIAREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDK KAAKYLNSPESDIYHKSKVLYGIFQAKQSIAKLNNCYLVEGYTDVIQFNQAGIENVVASSGTALTPDQIRLVNRLTKNIT VLFDGDAAGLRASIRGIDLILEEGMNVRVCAFPDGEDPDSFARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKK ADLIRDMVTSISKIPDRIQREVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGFSGGD PEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFLKADEEGNVKEVSEKRRYKVYEKIY LSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDKYLMHLNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQ NVSDTIFSMRWFLVSKIIHDLKHSLISDPQEDNSELLMMVVDYSKLLNNFSKKLGRVVVPYHGG >Mature_704_residues MRTFTGSNFLKIIYVLISQSTIDAVFETARVEEVIGDFVNLKRAGSNYKGLSPFSDERSPSFMVSPAKGIWKDFSSGKGG NSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKAMTDVRESMYLVSEFAAKYFQDVLVNSEEGKAIGLSYFKER GFTNETIKKFALGYSPETWDALTKEALGKGYKLEFLESTGLTIAREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDK KAAKYLNSPESDIYHKSKVLYGIFQAKQSIAKLNNCYLVEGYTDVIQFNQAGIENVVASSGTALTPDQIRLVNRLTKNIT VLFDGDAAGLRASIRGIDLILEEGMNVRVCAFPDGEDPDSFARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKK ADLIRDMVTSISKIPDRIQREVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGFSGGD PEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFLKADEEGNVKEVSEKRRYKVYEKIY LSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDKYLMHLNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQ NVSDTIFSMRWFLVSKIIHDLKHSLISDPQEDNSELLMMVVDYSKLLNNFSKKLGRVVVPYHGG
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=415, Percent_Identity=33.7349397590361, Blast_Score=243, Evalue=2e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007693 - InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 79981; Mature: 79981
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFTGSNFLKIIYVLISQSTIDAVFETARVEEVIGDFVNLKRAGSNYKGLSPFSDERSP CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SFMVSPAKGIWKDFSSGKGGNSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKA CEEECCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEECCCCCHHHHH MTDVRESMYLVSEFAAKYFQDVLVNSEEGKAIGLSYFKERGFTNETIKKFALGYSPETWD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCCCHHHHHHHHCCCCCHHHH ALTKEALGKGYKLEFLESTGLTIAREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDK HHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHCCEEEEEEECCCCCEEEECCEEEECCH KAAKYLNSPESDIYHKSKVLYGIFQAKQSIAKLNNCYLVEGYTDVIQFNQAGIENVVASS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCHHHHHHHHHCC GTALTPDQIRLVNRLTKNITVLFDGDAAGLRASIRGIDLILEEGMNVRVCAFPDGEDPDS CCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH FARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKKADLIRDMVTSISKIPDRIQR HHHCCCCCHHHHEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGFSGGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC PEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFLKADE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCC EGNVKEVSEKRRYKVYEKIYLSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDKYLMH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH LNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQNVSDTIFSMRWFLVSKIIHD CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH LKHSLISDPQEDNSELLMMVVDYSKLLNNFSKKLGRVVVPYHGG HHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEECCCC >Mature Secondary Structure MRTFTGSNFLKIIYVLISQSTIDAVFETARVEEVIGDFVNLKRAGSNYKGLSPFSDERSP CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC SFMVSPAKGIWKDFSSGKGGNSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKA CEEECCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEECCCCCHHHHH MTDVRESMYLVSEFAAKYFQDVLVNSEEGKAIGLSYFKERGFTNETIKKFALGYSPETWD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCCCHHHHHHHHCCCCCHHHH ALTKEALGKGYKLEFLESTGLTIAREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDK HHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHCCEEEEEEECCCCCEEEECCEEEECCH KAAKYLNSPESDIYHKSKVLYGIFQAKQSIAKLNNCYLVEGYTDVIQFNQAGIENVVASS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCHHHHHHHHHCC GTALTPDQIRLVNRLTKNITVLFDGDAAGLRASIRGIDLILEEGMNVRVCAFPDGEDPDS CCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH FARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKKADLIRDMVTSISKIPDRIQR HHHCCCCCHHHHEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGFSGGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC PEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFLKADE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCC EGNVKEVSEKRRYKVYEKIYLSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDKYLMH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHH LNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQNVSDTIFSMRWFLVSKIIHD CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH LKHSLISDPQEDNSELLMMVVDYSKLLNNFSKKLGRVVVPYHGG HHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]