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The map label for this gene is coxM [H]

Identifier: 146299400

GI number: 146299400

Start: 1894867

End: 1896057

Strand: Direct

Name: coxM [H]

Synonym: Fjoh_1640

Alternate gene names: 146299400

Gene position: 1894867-1896057 (Clockwise)

Preceding gene: 146299399

Following gene: 146299401

Centisome position: 31.08

GC content: 33.42

Gene sequence:

>1191_bases
ATGACAAGTTTGTTGGTAATTATAGTTTTAGTTTTATTAGCAGTTGCACTATGGCAATTGACCAAGATTTTTGATCTTAC
TCAAGTAGGATCTTCTTCGGACGATTCTCAAGTTGCATCAGATAATGACAATAACATTCAGGGATATATTTTGTTTGGCT
TTTTGGCATTCATTTATATATTTACTATTTATGGTTTACTAAAATGGGGTAATTTGGCGCTTCATACTCCTGCTTCAGAG
CACGGTGGTTTAGTAGATAGTTTAATGAATATTACTTGGGTTTTGATCTTTACAGTTCAAGTTATTACTCAAGGTTTATT
ATACTGGTTTTCTTTTAAATACAAAGGAAATAAAGATAAAAAAGCATTATTCTTTGCAGATAGTAACAAATTAGAAGCAA
TCTGGAGTATTATTCCATCTGTTGTTTTAGCTTGTTTAATTCTTTACGGATTATATGCTTGGAATAACATTATGTTTGTT
GATAAAGACGAAGATGTAATTGAAATTGAATTATACGCTCAGCAATTTAAATGGACAGCTAGATATGCTGGACAAGATAA
CGTTTTAGGAAAAGCTAACGTACGTTTAATTGAAGGTATCAACACATTAGGAGTTGATATGTCAGACCCTAACTCTCAGG
ATGATATTGTAGTTTCAGAACTGCATATTCCTAAAGGTAAAAAAGTACACTTCAAAATGCGTTCTCAAGACGTTTTACAC
TCAGCTTATATGCCTCACTTTAGAGCGCAGATGAACTGTGTTCCTGGAATGGTTACAGAATTTGCTTTCGTTCCAACTTA
TACTACTGCTGAATACAGAGAGCTTCCATTTATGGTTGAGAAAGTTGCGAATATTAATAAACTTAGAGCTGAAAAAAGTG
CTGAGTTAGTTGCAAAAGGCGGTACAGCTTTAGATCCTTATACATTTGACTATTTATTATTATGTAATAAAATATGTGGA
GCTTCACACTATAACATGCAAATGAAAGTTGTGGTTGACACTCCGGAAGATTATAAAAAATGGTTAAGTGAAAAAACTAC
TTTAGCTCAAGATATTAAAGCGGCAAAAGCTGCTGAAAAACCAGCTGAAGGAGCTGCTCCAACTACAGATACTACTGCAA
AAGTAAAAGATACCGTAAAAGCGGTAGTTGATACTGTTAAAGCAGCTGTAGCTAAAGTTGCGATGAAATAA

Upstream 100 bases:

>100_bases
GTATTTACTGCATTAACTAAATCTCCTTTGCTTGCAAAAAGAAATCCTTTCATCGAAGAAAGTAAACATTTTCATTATTA
ATATTTAAAGAAGTAAACAG

Downstream 100 bases:

>100_bases
TATTATTAAGAAAATTTAAAGTACACATATATGTCAGCAGAAGCGCACGGTCACGATCACGGACACGATCACGAGCACGA
ACATCATCATAAAGACACGT

Product: cytochrome C oxidase subunit II, transmembrane region

Products: NA

Alternate protein names: Alternative cytochrome c oxidase polypeptide II; Cytochrome BB3 subunit 2; Oxidase BB(3) subunit 2 [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTSLLVIIVLVLLAVALWQLTKIFDLTQVGSSSDDSQVASDNDNNIQGYILFGFLAFIYIFTIYGLLKWGNLALHTPASE
HGGLVDSLMNITWVLIFTVQVITQGLLYWFSFKYKGNKDKKALFFADSNKLEAIWSIIPSVVLACLILYGLYAWNNIMFV
DKDEDVIEIELYAQQFKWTARYAGQDNVLGKANVRLIEGINTLGVDMSDPNSQDDIVVSELHIPKGKKVHFKMRSQDVLH
SAYMPHFRAQMNCVPGMVTEFAFVPTYTTAEYRELPFMVEKVANINKLRAEKSAELVAKGGTALDPYTFDYLLLCNKICG
ASHYNMQMKVVVDTPEDYKKWLSEKTTLAQDIKAAKAAEKPAEGAAPTTDTTAKVKDTVKAVVDTVKAAVAKVAMK

Sequences:

>Translated_396_residues
MTSLLVIIVLVLLAVALWQLTKIFDLTQVGSSSDDSQVASDNDNNIQGYILFGFLAFIYIFTIYGLLKWGNLALHTPASE
HGGLVDSLMNITWVLIFTVQVITQGLLYWFSFKYKGNKDKKALFFADSNKLEAIWSIIPSVVLACLILYGLYAWNNIMFV
DKDEDVIEIELYAQQFKWTARYAGQDNVLGKANVRLIEGINTLGVDMSDPNSQDDIVVSELHIPKGKKVHFKMRSQDVLH
SAYMPHFRAQMNCVPGMVTEFAFVPTYTTAEYRELPFMVEKVANINKLRAEKSAELVAKGGTALDPYTFDYLLLCNKICG
ASHYNMQMKVVVDTPEDYKKWLSEKTTLAQDIKAAKAAEKPAEGAAPTTDTTAKVKDTVKAVVDTVKAAVAKVAMK
>Mature_395_residues
TSLLVIIVLVLLAVALWQLTKIFDLTQVGSSSDDSQVASDNDNNIQGYILFGFLAFIYIFTIYGLLKWGNLALHTPASEH
GGLVDSLMNITWVLIFTVQVITQGLLYWFSFKYKGNKDKKALFFADSNKLEAIWSIIPSVVLACLILYGLYAWNNIMFVD
KDEDVIEIELYAQQFKWTARYAGQDNVLGKANVRLIEGINTLGVDMSDPNSQDDIVVSELHIPKGKKVHFKMRSQDVLHS
AYMPHFRAQMNCVPGMVTEFAFVPTYTTAEYRELPFMVEKVANINKLRAEKSAELVAKGGTALDPYTFDYLLLCNKICGA
SHYNMQMKVVVDTPEDYKKWLSEKTTLAQDIKAAKAAEKPAEGAAPTTDTTAKVKDTVKAVVDTVKAAVAKVAMK

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A ce

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 44173; Mature: 44041

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLLVIIVLVLLAVALWQLTKIFDLTQVGSSSDDSQVASDNDNNIQGYILFGFLAFIYI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH
FTIYGLLKWGNLALHTPASEHGGLVDSLMNITWVLIFTVQVITQGLLYWFSFKYKGNKDK
HHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
KALFFADSNKLEAIWSIIPSVVLACLILYGLYAWNNIMFVDKDEDVIEIELYAQQFKWTA
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEEHHHHHHHH
RYAGQDNVLGKANVRLIEGINTLGVDMSDPNSQDDIVVSELHIPKGKKVHFKMRSQDVLH
HCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHH
SAYMPHFRAQMNCVPGMVTEFAFVPTYTTAEYRELPFMVEKVANINKLRAEKSAELVAKG
HHHCCHHHHHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTALDPYTFDYLLLCNKICGASHYNMQMKVVVDTPEDYKKWLSEKTTLAQDIKAAKAAEK
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
PAEGAAPTTDTTAKVKDTVKAVVDTVKAAVAKVAMK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLLVIIVLVLLAVALWQLTKIFDLTQVGSSSDDSQVASDNDNNIQGYILFGFLAFIYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHH
FTIYGLLKWGNLALHTPASEHGGLVDSLMNITWVLIFTVQVITQGLLYWFSFKYKGNKDK
HHHHHHHHCCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
KALFFADSNKLEAIWSIIPSVVLACLILYGLYAWNNIMFVDKDEDVIEIELYAQQFKWTA
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEEEHHHHHHHH
RYAGQDNVLGKANVRLIEGINTLGVDMSDPNSQDDIVVSELHIPKGKKVHFKMRSQDVLH
HCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHH
SAYMPHFRAQMNCVPGMVTEFAFVPTYTTAEYRELPFMVEKVANINKLRAEKSAELVAKG
HHHCCHHHHHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTALDPYTFDYLLLCNKICGASHYNMQMKVVVDTPEDYKKWLSEKTTLAQDIKAAKAAEK
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
PAEGAAPTTDTTAKVKDTVKAVVDTVKAAVAKVAMK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1444719; 12597275 [H]