| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is prc [H]
Identifier: 146299190
GI number: 146299190
Start: 1639245
End: 1641428
Strand: Direct
Name: prc [H]
Synonym: Fjoh_1430
Alternate gene names: 146299190
Gene position: 1639245-1641428 (Clockwise)
Preceding gene: 146299184
Following gene: 146299191
Centisome position: 26.89
GC content: 31.68
Gene sequence:
>2184_bases ATGAATGCTATTATTAAGTTTATGAAAAGAAATTATAAAATACTTATAGCCGTATTATGCTTGTCTTTAACCCTGTTTGC TTTTAAGATAAATGCTGACAAGAATGATGATCCGGATCCAAATAGAGACAAGACACTTTTAGAATTACTGGCTTTTGTTA TTGAAAAAGGACACTATAGTCCGGCAGAAATAAATGACGATTTTTCAAAAGGTATTTTTAAGGATTATATCGATGCATTA GACCCTTCAAAGAGGTTCTTTCTGCAGTCGGATATTGATGAGTTCAAGCAATATGAATTAATGCTTGATGATCAGTTTTT AAACAAAGACTTAACATTCTTTAATTTAACTTATACAAGATTAATGAAAAGAATGGAAGAGAGTAAAAAACGTTATAAAA CTATTTTAGCGCAGCCTTTTAATTATAGCACAGATGAGACTTTTAATGCAGATTATGAGACAATTCCGTATGCAAAGAAT TTAAATGAAATTAATGAAAGATGGAGAAAACAAATTAAACTTTCGACTCTTTCTTCACTTGTAACAAAACAGAAAATTGA AGAAGAGAAAAAGAAAAAAGATCCAGCTTACAAAGAAAAATCATTTGAAACTCTAGAAAAAGAAACTCGTGAAAGTTCTT TAAAATCATTAGATGACAATTTTAGTGTTATTAAAGATTTAAATAAAGATTACTGGTTTTCAGTATATTTAAATTCTATA ATGGCTCGTTTTGACCCGCATACAAGTTATTTTGCACCAGAAGAAAAAGATCGTTTTGATGTAAATATCAGTGGTAAATT AGAAGGAATTGGAGCAAGATTAACTAAGAAAAATGACTTTACTCAAATTGATGAGTTAATTTCAGGCGGACCAGCATGGA AAGGAAAAGAACTTGAAGCAGGAGATTTAATTCTAAAAGTGGCTCAAGGTAATGAAGAACCGGTTGATGTGGTTGGAATG CGTCTTGACGATGTTGTTAAAAAAATCAAAGGACATAAAGGAACTGTAGTAAAACTTACGGTTAAAAAAGTTGACGGAAG TATTAAAGTAATTTCAATTGTAAGAGATGTGGTTGAAATTGAAGAAACTTACGCTAAATCTAGTATTGTTGAAAAAAATG GATTGAAATACGGCGTTATTTATCTTCCTAAATTTTATATCGATTTTGAAAACAAAGACGGTCGTGATGCCGGAAAAGAT ATTGCCCTTGAAGTAGAAAGACTGAAAAAAGAAAATATAAACGGAATCGTTCTTGATGTTCGTGACGATGGAGGAGGATC TCTTTCTACAGTTGTTGATATTGCAGGTTTATTTATTGAAGAAGGACCAATTGTTCAGGTAAAATCTGCTGGAAAAAAGA AAGAGGTTTTATACGATAAAGATAAAAAAATAGAGTGGGACGGACCATTGGTAATTATGGTTAACAGTTTCTCTGCTTCG GCTTCTGAGATTTTAGCAGCAGCTATTCAGGATTACAAACGCGGCGTTATCATTGGAAGTAAACAAACTTATGGTAAAGG AACGGTACAAAATGTACTTGATTTAAACCAATTTGTTCGTAATGCAAATTATGGAGATTTAGGTGCTTTGAAAATTACAG GTCAAAAATTCTATAGAATTAACGGTGGTTCTACTCAATTAGAAGGTGTTCACAGTGATGTTGTAATGCCGGATCGTTAT GCTTATTTAAAAATGGGTGAGCGTGATATTGACAACGCAATGCCTTGGGATAAAATTGATCCTGCTGATTACAGTACGTG GACTTCTAACCAGAATTTTAGTAAAGCTATTGAGAAAAGCAGAACCAGAATTGCAGAAAATCCTCAGTTTAAATTAATTG AAGACAATGCAAAATGGATTGATGTTAAGAACAAAGAAAATACATACAGCCTGAACATTAAGAGTTTTAAAGAAACTCAG GAACAAGTTGAAAATGAAGGTAAAAAATACAAACCAATTTCTGATTACAAAAATAATCTGGTTTTTAAATCATTACCTTA TGAAGTGCAGGAAATGAACAATGATGCTACATTGAAAGAGAAAAGAGAAGCTTGGCACCAAGCTTTATCGAAAGATGTAT ATGTTGAGGAAGCATTAAATGTTTTAGACGATTTACAGTCTCCTTCTTATGTAAAAACTACAGTTTCACCTAAAATGAAA AAGGAGAAATTAGTAAAATCTTAA
Upstream 100 bases:
>100_bases ACACTTTTGAGCGATAAACATTTTTATATCTTTAACAAAAAATTATACTGATCTTGGCATGTTGGCATAGTTTTTACCGT AACTTAGATTAAAAAATTTG
Downstream 100 bases:
>100_bases TTTTAGAAAATTTAATTTGTTATTGAAAAACGCTTCTTAAATAGTAATTTATGGAGCGTTTTTTTTAGATAAAATATAGT ATTTATGAAGAATGCTTTAA
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MNAIIKFMKRNYKILIAVLCLSLTLFAFKINADKNDDPDPNRDKTLLELLAFVIEKGHYSPAEINDDFSKGIFKDYIDAL DPSKRFFLQSDIDEFKQYELMLDDQFLNKDLTFFNLTYTRLMKRMEESKKRYKTILAQPFNYSTDETFNADYETIPYAKN LNEINERWRKQIKLSTLSSLVTKQKIEEEKKKKDPAYKEKSFETLEKETRESSLKSLDDNFSVIKDLNKDYWFSVYLNSI MARFDPHTSYFAPEEKDRFDVNISGKLEGIGARLTKKNDFTQIDELISGGPAWKGKELEAGDLILKVAQGNEEPVDVVGM RLDDVVKKIKGHKGTVVKLTVKKVDGSIKVISIVRDVVEIEETYAKSSIVEKNGLKYGVIYLPKFYIDFENKDGRDAGKD IALEVERLKKENINGIVLDVRDDGGGSLSTVVDIAGLFIEEGPIVQVKSAGKKKEVLYDKDKKIEWDGPLVIMVNSFSAS ASEILAAAIQDYKRGVIIGSKQTYGKGTVQNVLDLNQFVRNANYGDLGALKITGQKFYRINGGSTQLEGVHSDVVMPDRY AYLKMGERDIDNAMPWDKIDPADYSTWTSNQNFSKAIEKSRTRIAENPQFKLIEDNAKWIDVKNKENTYSLNIKSFKETQ EQVENEGKKYKPISDYKNNLVFKSLPYEVQEMNNDATLKEKREAWHQALSKDVYVEEALNVLDDLQSPSYVKTTVSPKMK KEKLVKS
Sequences:
>Translated_727_residues MNAIIKFMKRNYKILIAVLCLSLTLFAFKINADKNDDPDPNRDKTLLELLAFVIEKGHYSPAEINDDFSKGIFKDYIDAL DPSKRFFLQSDIDEFKQYELMLDDQFLNKDLTFFNLTYTRLMKRMEESKKRYKTILAQPFNYSTDETFNADYETIPYAKN LNEINERWRKQIKLSTLSSLVTKQKIEEEKKKKDPAYKEKSFETLEKETRESSLKSLDDNFSVIKDLNKDYWFSVYLNSI MARFDPHTSYFAPEEKDRFDVNISGKLEGIGARLTKKNDFTQIDELISGGPAWKGKELEAGDLILKVAQGNEEPVDVVGM RLDDVVKKIKGHKGTVVKLTVKKVDGSIKVISIVRDVVEIEETYAKSSIVEKNGLKYGVIYLPKFYIDFENKDGRDAGKD IALEVERLKKENINGIVLDVRDDGGGSLSTVVDIAGLFIEEGPIVQVKSAGKKKEVLYDKDKKIEWDGPLVIMVNSFSAS ASEILAAAIQDYKRGVIIGSKQTYGKGTVQNVLDLNQFVRNANYGDLGALKITGQKFYRINGGSTQLEGVHSDVVMPDRY AYLKMGERDIDNAMPWDKIDPADYSTWTSNQNFSKAIEKSRTRIAENPQFKLIEDNAKWIDVKNKENTYSLNIKSFKETQ EQVENEGKKYKPISDYKNNLVFKSLPYEVQEMNNDATLKEKREAWHQALSKDVYVEEALNVLDDLQSPSYVKTTVSPKMK KEKLVKS >Mature_727_residues MNAIIKFMKRNYKILIAVLCLSLTLFAFKINADKNDDPDPNRDKTLLELLAFVIEKGHYSPAEINDDFSKGIFKDYIDAL DPSKRFFLQSDIDEFKQYELMLDDQFLNKDLTFFNLTYTRLMKRMEESKKRYKTILAQPFNYSTDETFNADYETIPYAKN LNEINERWRKQIKLSTLSSLVTKQKIEEEKKKKDPAYKEKSFETLEKETRESSLKSLDDNFSVIKDLNKDYWFSVYLNSI MARFDPHTSYFAPEEKDRFDVNISGKLEGIGARLTKKNDFTQIDELISGGPAWKGKELEAGDLILKVAQGNEEPVDVVGM RLDDVVKKIKGHKGTVVKLTVKKVDGSIKVISIVRDVVEIEETYAKSSIVEKNGLKYGVIYLPKFYIDFENKDGRDAGKD IALEVERLKKENINGIVLDVRDDGGGSLSTVVDIAGLFIEEGPIVQVKSAGKKKEVLYDKDKKIEWDGPLVIMVNSFSAS ASEILAAAIQDYKRGVIIGSKQTYGKGTVQNVLDLNQFVRNANYGDLGALKITGQKFYRINGGSTQLEGVHSDVVMPDRY AYLKMGERDIDNAMPWDKIDPADYSTWTSNQNFSKAIEKSRTRIAENPQFKLIEDNAKWIDVKNKENTYSLNIKSFKETQ EQVENEGKKYKPISDYKNNLVFKSLPYEVQEMNNDATLKEKREAWHQALSKDVYVEEALNVLDDLQSPSYVKTTVSPKMK KEKLVKS
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=596, Percent_Identity=34.3959731543624, Blast_Score=349, Evalue=3e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 83219; Mature: 83219
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: PS50106 PDZ ; PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAIIKFMKRNYKILIAVLCLSLTLFAFKINADKNDDPDPNRDKTLLELLAFVIEKGHYS CHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC PAEINDDFSKGIFKDYIDALDPSKRFFLQSDIDEFKQYELMLDDQFLNKDLTFFNLTYTR CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHH LMKRMEESKKRYKTILAQPFNYSTDETFNADYETIPYAKNLNEINERWRKQIKLSTLSSL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VTKQKIEEEKKKKDPAYKEKSFETLEKETRESSLKSLDDNFSVIKDLNKDYWFSVYLNSI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHH MARFDPHTSYFAPEEKDRFDVNISGKLEGIGARLTKKNDFTQIDELISGGPAWKGKELEA HHHCCCCCCCCCCCCCCCEEEEECCEEECCCCEECCCCCHHHHHHHHCCCCCCCCCCCCC GDLILKVAQGNEEPVDVVGMRLDDVVKKIKGHKGTVVKLTVKKVDGSIKVISIVRDVVEI CCEEEEEECCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH EETYAKSSIVEKNGLKYGVIYLPKFYIDFENKDGRDAGKDIALEVERLKKENINGIVLDV HHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE RDDGGGSLSTVVDIAGLFIEEGPIVQVKSAGKKKEVLYDKDKKIEWDGPLVIMVNSFSAS ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCEEECCCCEEEEEECCCCC ASEILAAAIQDYKRGVIIGSKQTYGKGTVQNVLDLNQFVRNANYGDLGALKITGQKFYRI HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEE NGGSTQLEGVHSDVVMPDRYAYLKMGERDIDNAMPWDKIDPADYSTWTSNQNFSKAIEKS CCCCCEECCCCCCCCCCCCHHEEECCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH RTRIAENPQFKLIEDNAKWIDVKNKENTYSLNIKSFKETQEQVENEGKKYKPISDYKNNL HHHHCCCCCEEEEECCCCEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCC VFKSLPYEVQEMNNDATLKEKREAWHQALSKDVYVEEALNVLDDLQSPSYVKTTVSPKMK EEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCHHH KEKLVKS HHHHCCC >Mature Secondary Structure MNAIIKFMKRNYKILIAVLCLSLTLFAFKINADKNDDPDPNRDKTLLELLAFVIEKGHYS CHHHHHHHHCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC PAEINDDFSKGIFKDYIDALDPSKRFFLQSDIDEFKQYELMLDDQFLNKDLTFFNLTYTR CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHH LMKRMEESKKRYKTILAQPFNYSTDETFNADYETIPYAKNLNEINERWRKQIKLSTLSSL HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VTKQKIEEEKKKKDPAYKEKSFETLEKETRESSLKSLDDNFSVIKDLNKDYWFSVYLNSI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHH MARFDPHTSYFAPEEKDRFDVNISGKLEGIGARLTKKNDFTQIDELISGGPAWKGKELEA HHHCCCCCCCCCCCCCCCEEEEECCEEECCCCEECCCCCHHHHHHHHCCCCCCCCCCCCC GDLILKVAQGNEEPVDVVGMRLDDVVKKIKGHKGTVVKLTVKKVDGSIKVISIVRDVVEI CCEEEEEECCCCCCHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHH EETYAKSSIVEKNGLKYGVIYLPKFYIDFENKDGRDAGKDIALEVERLKKENINGIVLDV HHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE RDDGGGSLSTVVDIAGLFIEEGPIVQVKSAGKKKEVLYDKDKKIEWDGPLVIMVNSFSAS ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCCCEEECCCCEEEEEECCCCC ASEILAAAIQDYKRGVIIGSKQTYGKGTVQNVLDLNQFVRNANYGDLGALKITGQKFYRI HHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEE NGGSTQLEGVHSDVVMPDRYAYLKMGERDIDNAMPWDKIDPADYSTWTSNQNFSKAIEKS CCCCCEECCCCCCCCCCCCHHEEECCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH RTRIAENPQFKLIEDNAKWIDVKNKENTYSLNIKSFKETQEQVENEGKKYKPISDYKNNL HHHHCCCCCEEEEECCCCEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHCCC VFKSLPYEVQEMNNDATLKEKREAWHQALSKDVYVEEALNVLDDLQSPSYVKTTVSPKMK EEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCHHH KEKLVKS HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]