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The map label for this gene is ygdD [C]

Identifier: 146299125

GI number: 146299125

Start: 1561556

End: 1561942

Strand: Direct

Name: ygdD [C]

Synonym: Fjoh_1365

Alternate gene names: 146299125

Gene position: 1561556-1561942 (Clockwise)

Preceding gene: 146299123

Following gene: 146299126

Centisome position: 25.61

GC content: 30.75

Gene sequence:

>387_bases
ATGAAAAGAAAAATTGTTTTAACTGGTGCTTTTATAGGGATGTTAGCTATTATTTTTGGAGCTTTTGGAGCCCATTTATT
AAAAAAATATTTGTCTATTGAGGAGTTAAACACTTTTGAAGTTGGGGTTCGTTATCAAATGTACCACGCTCTCTTTTTAC
TTTTTCTTTCTACCCGAAAAGATATTGCCGAAAAAACCGTAAAAACAATCTATAATTTAGTTGTAGCAGGAGTTGTTCTT
TTTAGCGGATCGATCTATATTTTAGCTACAAAAAGTCTTACAGTTTTTGATTCTAAAATTATCGTATTCGCAACACCTTT
AGGCGGATTTTTATTAATTATAGGCTGGGCGGTATTATTTCTTACTATTTTGAGGAAAAAATCATAA

Upstream 100 bases:

>100_bases
ACATAAAAAAATACGTTTTCGAGTGCTGAAATAATTGAGAAACTAAAACGAAAATTGAATAGGATGGAGTATTTTTGTTT
AAAATTAAAGTTTAGAAAAT

Downstream 100 bases:

>100_bases
AATCCCGAAAAAAAAATTCTGTATTAAAATTAATCTTTAATTTTGTCTCATAATTAACATATAAGGTTACTTATGTGAAT
TTTTATTGCTTTTTATCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKRKIVLTGAFIGMLAIIFGAFGAHLLKKYLSIEELNTFEVGVRYQMYHALFLLFLSTRKDIAEKTVKTIYNLVVAGVVL
FSGSIYILATKSLTVFDSKIIVFATPLGGFLLIIGWAVLFLTILRKKS

Sequences:

>Translated_128_residues
MKRKIVLTGAFIGMLAIIFGAFGAHLLKKYLSIEELNTFEVGVRYQMYHALFLLFLSTRKDIAEKTVKTIYNLVVAGVVL
FSGSIYILATKSLTVFDSKIIVFATPLGGFLLIIGWAVLFLTILRKKS
>Mature_128_residues
MKRKIVLTGAFIGMLAIIFGAFGAHLLKKYLSIEELNTFEVGVRYQMYHALFLLFLSTRKDIAEKTVKTIYNLVVAGVVL
FSGSIYILATKSLTVFDSKIIVFATPLGGFLLIIGWAVLFLTILRKKS

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=32.0610687022901, Blast_Score=63, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14281; Mature: 14281

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKIVLTGAFIGMLAIIFGAFGAHLLKKYLSIEELNTFEVGVRYQMYHALFLLFLSTRK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
DIAEKTVKTIYNLVVAGVVLFSGSIYILATKSLTVFDSKIIVFATPLGGFLLIIGWAVLF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEECCHHHHHHHHHHHHHH
LTILRKKS
HHHHHCCC
>Mature Secondary Structure
MKRKIVLTGAFIGMLAIIFGAFGAHLLKKYLSIEELNTFEVGVRYQMYHALFLLFLSTRK
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
DIAEKTVKTIYNLVVAGVVLFSGSIYILATKSLTVFDSKIIVFATPLGGFLLIIGWAVLF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEECCHHHHHHHHHHHHHH
LTILRKKS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA