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The map label for this gene is sodA [H]

Identifier: 146298890

GI number: 146298890

Start: 1277123

End: 1277734

Strand: Direct

Name: sodA [H]

Synonym: Fjoh_1129

Alternate gene names: 146298890

Gene position: 1277123-1277734 (Clockwise)

Preceding gene: 146298889

Following gene: 146298895

Centisome position: 20.95

GC content: 37.42

Gene sequence:

>612_bases
ATGGCTTTTGAATTACCACAATTACCTTATGCATACGATGCATTAGAACCACATATTGATGCACGTACAATGGAAATCCA
TCATACAAAGCACCACAATGCATACACTACTAATCTTAACGCAGCTATTGCTGGAACAGATTTAGAAGGAAAAACAATCG
AAAACATCTTAATTAACTTAGATAAATCTAACGCAGCAGTTCGTAACAATGGTGGAGGTTTTTATAACCACAATTTATTC
TGGACTGTAATGTCTCCAAACGGAGGAGGATTGCCAACAGGAGATTTATTAGCTGCTATTGAATCTTCTTTTGGAAGTTT
CGAAGAGTTTAAAGCAAAATTTGCTAAAGCCGGAGCAACTCAGTTTGGTTCTGGATGGGCTTGGTTAACAGTTCAAAAAG
GAGGAAAATTAGAAGTTGTAGGTACTCCAAATCAAGATAACCCATTAATGCCGGAAGTTGCTGGTCACGGTGGAACTCCA
ATCTTAGGAATGGACGTTTGGGAACATGCTTACTACTTAAACTACCAAAACAGAAGACCAGATTATATTGAAGCTTTCTT
CAGTGTAATTAACTGGACAGAAGTTGCAAGAAGATTTGCTTTAGACAAGTAA

Upstream 100 bases:

>100_bases
GTGAATTTAATTCAATTATAACGAAATAGTATTTTCAATTCCAAAGTTAAATGTCTAAATTTGGGATAAATTATTTATAA
ACCATAAAAATCATATTACC

Downstream 100 bases:

>100_bases
GAAAAAATAGAATAAAGATTATAGAAAAAAGACGAGTGCCTAAAGGTGCTCGTTTTTTTTGGTTCATATTTTTTAGAGTG
TTTCTTCTATAATCTTTACT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAFELPQLPYAYDALEPHIDARTMEIHHTKHHNAYTTNLNAAIAGTDLEGKTIENILINLDKSNAAVRNNGGGFYNHNLF
WTVMSPNGGGLPTGDLLAAIESSFGSFEEFKAKFAKAGATQFGSGWAWLTVQKGGKLEVVGTPNQDNPLMPEVAGHGGTP
ILGMDVWEHAYYLNYQNRRPDYIEAFFSVINWTEVARRFALDK

Sequences:

>Translated_203_residues
MAFELPQLPYAYDALEPHIDARTMEIHHTKHHNAYTTNLNAAIAGTDLEGKTIENILINLDKSNAAVRNNGGGFYNHNLF
WTVMSPNGGGLPTGDLLAAIESSFGSFEEFKAKFAKAGATQFGSGWAWLTVQKGGKLEVVGTPNQDNPLMPEVAGHGGTP
ILGMDVWEHAYYLNYQNRRPDYIEAFFSVINWTEVARRFALDK
>Mature_202_residues
AFELPQLPYAYDALEPHIDARTMEIHHTKHHNAYTTNLNAAIAGTDLEGKTIENILINLDKSNAAVRNNGGGFYNHNLFW
TVMSPNGGGLPTGDLLAAIESSFGSFEEFKAKFAKAGATQFGSGWAWLTVQKGGKLEVVGTPNQDNPLMPEVAGHGGTPI
LGMDVWEHAYYLNYQNRRPDYIEAFFSVINWTEVARRFALDK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=207, Percent_Identity=47.3429951690821, Blast_Score=188, Evalue=3e-48,
Organism=Homo sapiens, GI67782305, Length=207, Percent_Identity=47.3429951690821, Blast_Score=188, Evalue=3e-48,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=41, Blast_Score=142, Evalue=1e-34,
Organism=Escherichia coli, GI1790342, Length=209, Percent_Identity=55.5023923444976, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=49.5, Blast_Score=206, Evalue=9e-55,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=42.7860696517413, Blast_Score=155, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=39, Blast_Score=147, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=42.7884615384615, Blast_Score=145, Evalue=5e-36,
Organism=Drosophila melanogaster, GI17136812, Length=196, Percent_Identity=46.4285714285714, Blast_Score=172, Evalue=1e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22445; Mature: 22314

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPQLPYAYDALEPHIDARTMEIHHTKHHNAYTTNLNAAIAGTDLEGKTIENILINL
CCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCEEEECCCEEEECCCCCCCEEEEEEEEC
DKSNAAVRNNGGGFYNHNLFWTVMSPNGGGLPTGDLLAAIESSFGSFEEFKAKFAKAGAT
CCCCCEEECCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QFGSGWAWLTVQKGGKLEVVGTPNQDNPLMPEVAGHGGTPILGMDVWEHAYYLNYQNRRP
CCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHCCCCCCEEEEHHHHHHEEEEECCCCCC
DYIEAFFSVINWTEVARRFALDK
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AFELPQLPYAYDALEPHIDARTMEIHHTKHHNAYTTNLNAAIAGTDLEGKTIENILINL
CCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCEEEECCCEEEECCCCCCCEEEEEEEEC
DKSNAAVRNNGGGFYNHNLFWTVMSPNGGGLPTGDLLAAIESSFGSFEEFKAKFAKAGAT
CCCCCEEECCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QFGSGWAWLTVQKGGKLEVVGTPNQDNPLMPEVAGHGGTPILGMDVWEHAYYLNYQNRRP
CCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHCCCCCCEEEEHHHHHHEEEEECCCCCC
DYIEAFFSVINWTEVARRFALDK
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]