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The map label for this gene is ypmQ [H]

Identifier: 146298722

GI number: 146298722

Start: 1074253

End: 1074918

Strand: Direct

Name: ypmQ [H]

Synonym: Fjoh_0960

Alternate gene names: 146298722

Gene position: 1074253-1074918 (Clockwise)

Preceding gene: 146298720

Following gene: 146298723

Centisome position: 17.62

GC content: 35.14

Gene sequence:

>666_bases
ATGAAATCGCTTCTTTACAAATACCGCAAATTCTTTATTGTATTAATTGTATTTTCTGCAGTCACTATATCTTTATTTTA
TTCGGCATTAAAACCGCAAAAAACACTTCCAATTTACAATCCGTCTGATGTAAATCCTGAATTGGTAGACAGTACGATTC
AGTACAAAAGCAAATACCATACAATTGCTGATTTTAAATTTGTAAACCAAAACGGCGATACGATTACCCAAAAAGATTAT
GAAGGCAAGATTTATGTTGCTGATTTCTTTTTTACAACCTGCGGTTCTATCTGCCCAAAAATGTCAACCAATCTGGCTGA
TGTTCAAAAGGCGGTTTTAAATAATCCAAAAGTAAAATTGCTTTCTCATACGGTATTTCCGGAAGTAGACAGTGTTTCGG
TTTTAAAAGCGTATGCGGTAAAATATGGTGTTGTTGACAGCAAATGGAATTTGGTTACCGGCGATAAAAAAGAAATTTAC
ACTATGGCCAGAAAATCGTATCTGGCGGTAAAACTGGGAAGACCAGATCAGCTGTATGATATGGTGCATACCGAGAATTT
TGTTTTGGTAGATCAAAAAAGACGAGTGCGCGGTTTTTATGACGGAACCAAAAAAGAAGAAATCCAGCGTTTGTTAGAAG
ACATAGATTTCTTATCAAAAGAGTAA

Upstream 100 bases:

>100_bases
CTGCCCCATTGTGATAGTACAACGTATTCTGTCTGTTAAAAAGTGTTAGAACCGCCGCTTTTAAAATGCTCTTTTCGTAT
TTTTGCGCCAAATTATTTTT

Downstream 100 bases:

>100_bases
AATCCCTTATTTTTAGAAAGTTTTAGCATTTTCAAAAGCGATTATTGCCTTGAGATAAATAATTATTGCCTATTTTTGCA
ATCTAAATTCAATCTAAATA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKSLLYKYRKFFIVLIVFSAVTISLFYSALKPQKTLPIYNPSDVNPELVDSTIQYKSKYHTIADFKFVNQNGDTITQKDY
EGKIYVADFFFTTCGSICPKMSTNLADVQKAVLNNPKVKLLSHTVFPEVDSVSVLKAYAVKYGVVDSKWNLVTGDKKEIY
TMARKSYLAVKLGRPDQLYDMVHTENFVLVDQKRRVRGFYDGTKKEEIQRLLEDIDFLSKE

Sequences:

>Translated_221_residues
MKSLLYKYRKFFIVLIVFSAVTISLFYSALKPQKTLPIYNPSDVNPELVDSTIQYKSKYHTIADFKFVNQNGDTITQKDY
EGKIYVADFFFTTCGSICPKMSTNLADVQKAVLNNPKVKLLSHTVFPEVDSVSVLKAYAVKYGVVDSKWNLVTGDKKEIY
TMARKSYLAVKLGRPDQLYDMVHTENFVLVDQKRRVRGFYDGTKKEEIQRLLEDIDFLSKE
>Mature_221_residues
MKSLLYKYRKFFIVLIVFSAVTISLFYSALKPQKTLPIYNPSDVNPELVDSTIQYKSKYHTIADFKFVNQNGDTITQKDY
EGKIYVADFFFTTCGSICPKMSTNLADVQKAVLNNPKVKLLSHTVFPEVDSVSVLKAYAVKYGVVDSKWNLVTGDKKEIY
TMARKSYLAVKLGRPDQLYDMVHTENFVLVDQKRRVRGFYDGTKKEEIQRLLEDIDFLSKE

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 25465; Mature: 25465

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLYKYRKFFIVLIVFSAVTISLFYSALKPQKTLPIYNPSDVNPELVDSTIQYKSKYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
TIADFKFVNQNGDTITQKDYEGKIYVADFFFTTCGSICPKMSTNLADVQKAVLNNPKVKL
EEEEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
LSHTVFPEVDSVSVLKAYAVKYGVVDSKWNLVTGDKKEIYTMARKSYLAVKLGRPDQLYD
EEHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCEEEEEECCCHHHHH
MVHTENFVLVDQKRRVRGFYDGTKKEEIQRLLEDIDFLSKE
HHHCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLLYKYRKFFIVLIVFSAVTISLFYSALKPQKTLPIYNPSDVNPELVDSTIQYKSKYH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
TIADFKFVNQNGDTITQKDYEGKIYVADFFFTTCGSICPKMSTNLADVQKAVLNNPKVKL
EEEEEEEECCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
LSHTVFPEVDSVSVLKAYAVKYGVVDSKWNLVTGDKKEIYTMARKSYLAVKLGRPDQLYD
EEHHCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCEEEEEECCCHHHHH
MVHTENFVLVDQKRRVRGFYDGTKKEEIQRLLEDIDFLSKE
HHHCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]