| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is braD [H]
Identifier: 146284033
GI number: 146284033
Start: 4021258
End: 4022829
Strand: Direct
Name: braD [H]
Synonym: PST_3721
Alternate gene names: 146284033
Gene position: 4021258-4022829 (Clockwise)
Preceding gene: 146284032
Following gene: 146284034
Centisome position: 88.04
GC content: 68.32
Gene sequence:
>1572_bases ATGAACACTGCCCTGCACCGATTATTGCTGCTGCTCCTGCTGGTTCTGCCCTGGGCAGCCCAGGCCGGAGACGCGGCCGA CTACGCCAAGGCCAGCCCGGCCAAACAGGCCAGGCTGCTGGAAAGCTGGGCCGCCGCGCCCGCGCCTGAACGGCTGCCGC TGATCGAAGCGCTGCGCGCCAATCGCGTGGCCATCGACCAGAACAAGACGCCCTTCATCGAGGAAAACGGGGCCTACCGT GCCCTCGAAGGTGATGCCGAGCCGGTCGGCACGCCGAAGAAGCTGCGTCTGAACAACCGCCTGCGCGGCCTGCTCAACAC CGCCCTGGCGAGCCACCAGCTGTTCGCCGAAGACCCCGCGCAGCGCCTCGCCGCGGCCAAGCGCCTGCAGCGCAGCGGCC AACCGGAGCAGCTCGAGCTGCTTCAGCAGCGCCTGGACGCCGAGGACGATGCCGCCGTCAGCGAAGCGCTGACCCTGGCG CTGGCCAACCTGCAGCTGACCGCGAATGATCCGGCAGTACGCCTCGCCGCGGTGCGCCTGCTCGGCGAAACCGGCGCGCC CATGGCGCGGGTGCGCCTGGAGAACCTGCTGGCCGACGAGGCGGAAACCGACGCCAACGTGCGCAAGGCCGCCGAGACCA GCCTGGCGCAGGTCAAGCGCAAGCTCCTGATCGGCGAACTGCTCGGCCAGGCTTTCAGCGGCCTGTCGCTGGGCTCGATC CTGCTGCTCGCCGCCCTCGGCCTGGCGATCACCTTCGGCCTGCTCGGGGTGATCAACATGGCCCACGGCGAGATGCTCAT GCTCGGGGCCTACACCACCTACATGGTGCAAGTGCTGATGGCGCGGCTCGCCCCGGAAGCCCTCGCCTTCTACCCGCTGG TGGCGTTGCCGGTGGCCTTCTTCGTCACCGCCGCGATCGGCATGGCGCTGGAGCGCACGGTGATCCGCCATCTGTACGGC CGCCCGCTGGAAACCCTGCTGGCCACCTGGGGCATCAGCCTGATCCTGATCCAGCTGGTGCGGGTGCTGTTCGGCGCGCA GAACGTCGAGGTCGCCAACCCGGCCTGGCTGTCCGGTGGCCTGCAGGTGCTGCCGAACCTGGTGCTGCCGTACAACCGCA TGGTGATCATCGGCTTCGCGCTGTTCGTGGTGCTCCTGACCTGGCTCTTGCTGAACAAGACGCGCCTGGGCCTGAACGTG CGCGCGGTCACGCAGAACCGCAACATGGCCGCCTGCTGCGGCGTGCCCACCGGGCGCATCGACATGATGGCCTTCGGGCT GGGTTCCGGCATCGCCGGGCTCGGCGGCGTGGCCCTGAGCCAGATCGGCAATGTCGGCCCGGACCTCGGCCAGAGCTACA TCATCGATTCCTTCCTGGTGGTGGTGCTCGGCGGTGTCGGCCAGCTGGCCGGCAGCATCTTCGCCGCCTTCGGCCTCGGC ATCGCCAACAAGATCCTCGAACCGCAGATCGGCGCCGTGCTGGGCAAGATCCTCATCCTCGCGCTGATCATCCTCTTCAT CCAGAAGCGTCCGCAGGGGCTCTTCGCTCTCAAGGGGAGGGTCATCGATTGA
Upstream 100 bases:
>100_bases TTGGGCGGATCGGGACGCGTAGTCGAGACGTTCTCATCCGCCCGCCCATCGCCGCCACCTCCGTCAAGAGAGCCCGCGGC GCCCCTTGGGGAATTCACGC
Downstream 100 bases:
>100_bases ACCAGCCACTTACCCTCACCGCCGCGCAGAAAGCCGGGCCGAAAGCCACGGTCATCGCCCTCGGCCTGGCGCTCGCCGTC CTCGTCGCCATGCCGCTGCT
Product: branched-chain amino acid ABC transporter, permease protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MNTALHRLLLLLLLVLPWAAQAGDAADYAKASPAKQARLLESWAAAPAPERLPLIEALRANRVAIDQNKTPFIEENGAYR ALEGDAEPVGTPKKLRLNNRLRGLLNTALASHQLFAEDPAQRLAAAKRLQRSGQPEQLELLQQRLDAEDDAAVSEALTLA LANLQLTANDPAVRLAAVRLLGETGAPMARVRLENLLADEAETDANVRKAAETSLAQVKRKLLIGELLGQAFSGLSLGSI LLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLAPEALAFYPLVALPVAFFVTAAIGMALERTVIRHLYG RPLETLLATWGISLILIQLVRVLFGAQNVEVANPAWLSGGLQVLPNLVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNV RAVTQNRNMAACCGVPTGRIDMMAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGVGQLAGSIFAAFGLG IANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRVID
Sequences:
>Translated_523_residues MNTALHRLLLLLLLVLPWAAQAGDAADYAKASPAKQARLLESWAAAPAPERLPLIEALRANRVAIDQNKTPFIEENGAYR ALEGDAEPVGTPKKLRLNNRLRGLLNTALASHQLFAEDPAQRLAAAKRLQRSGQPEQLELLQQRLDAEDDAAVSEALTLA LANLQLTANDPAVRLAAVRLLGETGAPMARVRLENLLADEAETDANVRKAAETSLAQVKRKLLIGELLGQAFSGLSLGSI LLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLAPEALAFYPLVALPVAFFVTAAIGMALERTVIRHLYG RPLETLLATWGISLILIQLVRVLFGAQNVEVANPAWLSGGLQVLPNLVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNV RAVTQNRNMAACCGVPTGRIDMMAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGVGQLAGSIFAAFGLG IANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRVID >Mature_523_residues MNTALHRLLLLLLLVLPWAAQAGDAADYAKASPAKQARLLESWAAAPAPERLPLIEALRANRVAIDQNKTPFIEENGAYR ALEGDAEPVGTPKKLRLNNRLRGLLNTALASHQLFAEDPAQRLAAAKRLQRSGQPEQLELLQQRLDAEDDAAVSEALTLA LANLQLTANDPAVRLAAVRLLGETGAPMARVRLENLLADEAETDANVRKAAETSLAQVKRKLLIGELLGQAFSGLSLGSI LLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLAPEALAFYPLVALPVAFFVTAAIGMALERTVIRHLYG RPLETLLATWGISLILIQLVRVLFGAQNVEVANPAWLSGGLQVLPNLVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNV RAVTQNRNMAACCGVPTGRIDMMAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGVGQLAGSIFAAFGLG IANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRVID
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=293, Percent_Identity=26.962457337884, Blast_Score=89, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 55744; Mature: 55744
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTALHRLLLLLLLVLPWAAQAGDAADYAKASPAKQARLLESWAAAPAPERLPLIEALRA CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHC NRVAIDQNKTPFIEENGAYRALEGDAEPVGTPKKLRLNNRLRGLLNTALASHQLFAEDPA CCEEECCCCCCCEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH QRLAAAKRLQRSGQPEQLELLQQRLDAEDDAAVSEALTLALANLQLTANDPAVRLAAVRL HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH LGETGAPMARVRLENLLADEAETDANVRKAAETSLAQVKRKLLIGELLGQAFSGLSLGSI HHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLAPEALAFYPLVALPVAF HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH FVTAAIGMALERTVIRHLYGRPLETLLATWGISLILIQLVRVLFGAQNVEVANPAWLSGG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC LQVLPNLVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNVRAVTQNRNMAACCGVPTGRI HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCH DMMAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGVGQLAGSIFAAFGLG HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH IANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRVID HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC >Mature Secondary Structure MNTALHRLLLLLLLVLPWAAQAGDAADYAKASPAKQARLLESWAAAPAPERLPLIEALRA CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHC NRVAIDQNKTPFIEENGAYRALEGDAEPVGTPKKLRLNNRLRGLLNTALASHQLFAEDPA CCEEECCCCCCCEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH QRLAAAKRLQRSGQPEQLELLQQRLDAEDDAAVSEALTLALANLQLTANDPAVRLAAVRL HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH LGETGAPMARVRLENLLADEAETDANVRKAAETSLAQVKRKLLIGELLGQAFSGLSLGSI HHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LLLAALGLAITFGLLGVINMAHGEMLMLGAYTTYMVQVLMARLAPEALAFYPLVALPVAF HHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH FVTAAIGMALERTVIRHLYGRPLETLLATWGISLILIQLVRVLFGAQNVEVANPAWLSGG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC LQVLPNLVLPYNRMVIIGFALFVVLLTWLLLNKTRLGLNVRAVTQNRNMAACCGVPTGRI HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCH DMMAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGVGQLAGSIFAAFGLG HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH IANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRVID HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]