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The map label for this gene is rhaS [H]

Identifier: 146283910

GI number: 146283910

Start: 3881710

End: 3882822

Strand: Direct

Name: rhaS [H]

Synonym: PST_3593

Alternate gene names: 146283910

Gene position: 3881710-3882822 (Clockwise)

Preceding gene: 146283909

Following gene: 146283911

Centisome position: 84.99

GC content: 70.08

Gene sequence:

>1113_bases
TTGCTGATCGCGCATGACCGCAGGTTCGCATGGCGCGATGTTGGCAAGATTCGCGGGAACCTTGTCATTGCGACAGCGGC
GTCTCGGCAGCAGACTGCAGCCATCCACTCCGAGAGCTGCACCATGGACGCCACCCGCACCGTCGCCTGCCTGATCTACC
CGGATGTGATGAGCCTGGACGTCACCGGCCCGATGCAGGTGTTCGCCTCGGCCAACGTCGAGCGACAGCGCCAGGGGCTG
CCTCGTCATTACGAGCTGGTGCTGCTGGGCACCACGGCCGGCCCGGTCGTCACCTCGGCCGGGCTGAAGCTGGTGGCGGA
TGCCAGCTGGGCCGACTGCGATCCCGCCACGCTGGACACCCTGCTGATCCCCGGTGGCGTCGGCGTGGATGCGCAGTGGC
GCGACCAAGCGCTGCTCGCCTGGCTGCGGGCCGCCGAACCCAGCGTGCGGCGCCTCGGCTCGGTCTGTTCCGGCGCGCTG
ATCCTGGCCGAGGCCGGGCTGTTCGACGGGCGCAAGGCGACCACGCACTGGGCGGACCTCGCGGCGCTGGGCGAGTACGC
ATCCATCGAGGTGCAGGGCGACCGGTTGCACACCTACGACCCGACCGATCCACAGGCGTCGCACCTGTTCAGCTCCGCGG
GCGTCACCGCCGGCATCGACCTGGCGCTGGCCCTGGTGGAAGCCGATCTCGGCCGCGCACTGGCGCTGGCAGTCGCCCAG
CGGCTGGTGATGTTCCTGCGCCGGCCCGGCGGGCAGACTCAGTTCAGCCCGATGCTGGCGGCGCCGAGCGGCAACGTGGC
GCGCCTCGCCGCGCTGCTGGAATGGATTCCAGGGCATCTGGGCGACGACCTGTCCATCGAGGCGCTGGCCGCCCAGGCGC
ATATGACCCCACGCACCCTCTGCCGCCTGTTCAGCCAGGAAACCGGCATGGGCCCGGGCCAGTACATCGAACGGGTGCGC
CTGGAAGCCGCGCGCAATCTGCTGCTCGACGCCCAGGCCTCGATCGCGACGGTGGCGCGGCTGACCGGCTTCGGCCATCC
GGAAAACCTCCGGCGCAGCTTCCAGAAGCACCTGTCGGTCAGCCCGCGGGACTTTTACCAGCGCTTCGGCTGA

Upstream 100 bases:

>100_bases
CAAGACCGTGGTCGGCATGACGCCGGGGCAGTATCGCTTGCGGATCAAGCGCAGCGGCGCCTGAAGCGCAGGCCGCCATC
CACAAAAGTCGACTTTCGCG

Downstream 100 bases:

>100_bases
CCAACCGACCTCATTCACCGTTCCCAGCCCGCTCGGCATCTGGCCAGGCAGCACTGTGCCCGCTCGCCACCCTAAAGGAG
CCGCTCATGCATCTTTTGCT

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MLIAHDRRFAWRDVGKIRGNLVIATAASRQQTAAIHSESCTMDATRTVACLIYPDVMSLDVTGPMQVFASANVERQRQGL
PRHYELVLLGTTAGPVVTSAGLKLVADASWADCDPATLDTLLIPGGVGVDAQWRDQALLAWLRAAEPSVRRLGSVCSGAL
ILAEAGLFDGRKATTHWADLAALGEYASIEVQGDRLHTYDPTDPQASHLFSSAGVTAGIDLALALVEADLGRALALAVAQ
RLVMFLRRPGGQTQFSPMLAAPSGNVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTLCRLFSQETGMGPGQYIERVR
LEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSVSPRDFYQRFG

Sequences:

>Translated_370_residues
MLIAHDRRFAWRDVGKIRGNLVIATAASRQQTAAIHSESCTMDATRTVACLIYPDVMSLDVTGPMQVFASANVERQRQGL
PRHYELVLLGTTAGPVVTSAGLKLVADASWADCDPATLDTLLIPGGVGVDAQWRDQALLAWLRAAEPSVRRLGSVCSGAL
ILAEAGLFDGRKATTHWADLAALGEYASIEVQGDRLHTYDPTDPQASHLFSSAGVTAGIDLALALVEADLGRALALAVAQ
RLVMFLRRPGGQTQFSPMLAAPSGNVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTLCRLFSQETGMGPGQYIERVR
LEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSVSPRDFYQRFG
>Mature_370_residues
MLIAHDRRFAWRDVGKIRGNLVIATAASRQQTAAIHSESCTMDATRTVACLIYPDVMSLDVTGPMQVFASANVERQRQGL
PRHYELVLLGTTAGPVVTSAGLKLVADASWADCDPATLDTLLIPGGVGVDAQWRDQALLAWLRAAEPSVRRLGSVCSGAL
ILAEAGLFDGRKATTHWADLAALGEYASIEVQGDRLHTYDPTDPQASHLFSSAGVTAGIDLALALVEADLGRALALAVAQ
RLVMFLRRPGGQTQFSPMLAAPSGNVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTLCRLFSQETGMGPGQYIERVR
LEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSVSPRDFYQRFG

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=161, Percent_Identity=29.1925465838509, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39779; Mature: 39779

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAHDRRFAWRDVGKIRGNLVIATAASRQQTAAIHSESCTMDATRTVACLIYPDVMSLD
CEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCHHEEEEEEECCCEEEC
VTGPMQVFASANVERQRQGLPRHYELVLLGTTAGPVVTSAGLKLVADASWADCDPATLDT
CCCHHHHHHCCCHHHHHCCCCCEEEEEEEECCCCCHHHHCCCEEEECCCCCCCCCCCCCE
LLIPGGVGVDAQWRDQALLAWLRAAEPSVRRLGSVCSGALILAEAGLFDGRKATTHWADL
EEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
AALGEYASIEVQGDRLHTYDPTDPQASHLFSSAGVTAGIDLALALVEADLGRALALAVAQ
HHHCCCEEEEEECCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLVMFLRRPGGQTQFSPMLAAPSGNVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTL
HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHH
CRLFSQETGMGPGQYIERVRLEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
SPRDFYQRFG
CHHHHHHHCC
>Mature Secondary Structure
MLIAHDRRFAWRDVGKIRGNLVIATAASRQQTAAIHSESCTMDATRTVACLIYPDVMSLD
CEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCHHEEEEEEECCCEEEC
VTGPMQVFASANVERQRQGLPRHYELVLLGTTAGPVVTSAGLKLVADASWADCDPATLDT
CCCHHHHHHCCCHHHHHCCCCCEEEEEEEECCCCCHHHHCCCEEEECCCCCCCCCCCCCE
LLIPGGVGVDAQWRDQALLAWLRAAEPSVRRLGSVCSGALILAEAGLFDGRKATTHWADL
EEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHH
AALGEYASIEVQGDRLHTYDPTDPQASHLFSSAGVTAGIDLALALVEADLGRALALAVAQ
HHHCCCEEEEEECCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLVMFLRRPGGQTQFSPMLAAPSGNVARLAALLEWIPGHLGDDLSIEALAAQAHMTPRTL
HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHH
CRLFSQETGMGPGQYIERVRLEAARNLLLDAQASIATVARLTGFGHPENLRRSFQKHLSV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
SPRDFYQRFG
CHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA