| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
Click here to switch to the map view.
The map label for this gene is atoS [C]
Identifier: 146283794
GI number: 146283794
Start: 3760169
End: 3762457
Strand: Direct
Name: atoS [C]
Synonym: PST_3477
Alternate gene names: 146283794
Gene position: 3760169-3762457 (Clockwise)
Preceding gene: 146283793
Following gene: 146283798
Centisome position: 82.33
GC content: 66.1
Gene sequence:
>2289_bases ATGCTGCGGCACGCCCAGCGCTCCAAGCGTTGCGCTTCCATCAGGAACCCTTGCGCCGTGTCGATTCGCTCCCGTCTGGT TTGGCTGGTCATTGCCGTTATAGCCCCGGCATTCGCGTTTGCGCTGTATGGCACCTATGCGGTCTATCGTGCGCAATCGG CGCAAGTCGATCAGGGCATGAAGGAAGTTTCGCGAGCCGTCGCGCTGGCCGTCGATCGCGAGCTGAGTCGGTATGCCACC ATCGTCTCGACGCTCGCGGCGTCCCCAACGATCGTCAAAGGTGACGTGCGGACCTTCCACGAGCGCCTTCAGCAGACCGA ACATGCGGTGGGCGCCAGCGTGGTGATCTACGATCCGCAAGGCACCCCCTTGGCTGACACGGATCATCCGTTTGGCGCAC CCCTGCCAAGCCTGCCGGACTTTCGAACCTTCATAACCACCACGCAGGCCGACGTCAGCCCGGCGTTCCGCGACCCAGTG ACGGGGGCGCAGAGCATCGCCATCCGCCACCCGGTGATCCGCGGCGGCGAGGTCGTTTACTACCTGACCATGGACTTTCC GGTTGCAGGCATCGGTGCGCTGCTGGAGCAACAGGCGCTGCCGGAGAAGTGGCTCGGGGTGATTCTGGATCAGAACCAAA CCGTCGTCGCGCGCACCCGCGATCCGGACAAACACATCGGCAAGCGCGCCAGCCCCGATTTCGTCAGCCAGCTGCAGGCC GCGGCAGGCGTCGACGGCAAGGTGCAGTCCATCACTCGGGACGACGTGCCGGTAACGACGTTCTTCAGCCATGCACCGGC CTCCGGCTGGACGGCGCTGATCGCCATCCCCCGCAACGACCTGCTGGCCAGCGTGCTCGCGCCGCTGGGGACCGTGGTGC TGGGTATCCTGGTCGTGCTGGCGTTGGCGGTCGTGCTGGCGATCGCAGTCGGTCGAACCATCACCCGACCGCTTGCGCAG CTCGATGATGCGGCCAGCGCGCTGGCGCGAGGCGAGGTATTCGACCCGCCCAGCACGGGAATGGATGAAACCGACCGTAC CGCGCAAGTGATGGCCCAGGCCAGCGTGACGATCCATCGCTCCAGCCGGGAGATGGCTCACAGGGTCAAGGAGGCGGTCG CCCAGGCCGAGCGCTCCCATCAGGCCCTGCTCCAGGGGCAGAAGCTCGAAGCGCTGGGCAACCTGACGGCGGGGATTTCC CACGAGTTCAACAACCTGCTGCAAAGCATGACCATGGGCCTGCAGCTGGCCGAAATGCTGACCTCACATCCGCGCGCCAG GCGTGCCATCGAGGGCTGCCAGCGGTCCGCCCGGCGGGCCACTCGCCTCACACGGCATCTGATGACCTTCAGCAGAAGCC GCACTGCCGACGCCGAACAGGTCGACCTGCGCGTGTTGATCATCGGCATGCACGAGCTGCTGACCGGCGCCCTTCCCAAC CGCGTGACGCTGACGTTGGAGCTGCCAGAAGGGGCCTGGCCGACGGTCCTCGATCCGGTGCAGTGCGAGCTGGCTGTCCT CAACCTTGCGATCAACGCCCGTGACGCGATGCCGGAAGGCGGCCCGCTGGTCATCGCCCTGCATCAGCTCACTCTGGTGC AGGACAATCCGTTCGGTCTGGCAGCTGGCCCCTACCTGTGCGTGGATGTGGAAGATTCCGGCTGCGGCATGAGTCCGGAA GTCCAGGCACACGTGTTCGAGCCGTTCTTCACCACCAAGCCGGTCGGCGAAGGGACTGGCCTGGGCCTGGCCCAGGTCTA CGGTTTCGCCCGCCAATCCGGCGGGACGGTGTCGATCCAGAGCGAGCTCGGCAAGGGAACCCGCGTGTCCTTGCTGCTGC CGCGCATGGAACAGGCTGTCTGCGCCATACCGGAGGATCAGGATGCGTCCGTGCGGGCCGGCCGCCCGGCACGGGTGCTG GTGGTCGATGATGACGCCGAAGTGCGCGAAGCGATGGTCGCGATGCTCGATGAGCTGGGTTATCAGGTCGACGAAGCACC TTCGGCGGATGACGCGCTGGCGAGGCTGGCCGACCGGCGTCAGCCAGCCATCGACATCCTCCTGTCGGACGTAGTCATGC CTGGGCGGCTGGACGGTGTCGGCCTCGCCGAAGAAGTGCAGCGGCTCTATCCAACGATCCCGATCATCCTCGCATCGGGA TACACCACGCGGATTGCCACCGAGCCGGCGGTCAGGGTGCTGGCGAAACCGTTCAGCCATCAGGCCCTGGCCGAGACCCT GTCGGAAATCCTCGACTCGAATACGCCCGCGCCTCCCGCCGCGCCGTGA
Upstream 100 bases:
>100_bases GCGGCTGAAGCCGACCGAGTACAGCAGTCCGAAACCCTGGGCCAGCGCCTCGCTCGTCGGCGATGAGGCCGGCCCGCGCT TCTTCTGCGTGACCTGAGTT
Downstream 100 bases:
>100_bases GCGCCCGGGCAGGCGCCACGCGTGGGAGGGTCGGTTCGCTCCCCTCCCTCCGTCGCTCCGCCCTGCCGCAGCCGCTTACC CGTAGATCGCCGGCTCCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MLRHAQRSKRCASIRNPCAVSIRSRLVWLVIAVIAPAFAFALYGTYAVYRAQSAQVDQGMKEVSRAVALAVDRELSRYAT IVSTLAASPTIVKGDVRTFHERLQQTEHAVGASVVIYDPQGTPLADTDHPFGAPLPSLPDFRTFITTTQADVSPAFRDPV TGAQSIAIRHPVIRGGEVVYYLTMDFPVAGIGALLEQQALPEKWLGVILDQNQTVVARTRDPDKHIGKRASPDFVSQLQA AAGVDGKVQSITRDDVPVTTFFSHAPASGWTALIAIPRNDLLASVLAPLGTVVLGILVVLALAVVLAIAVGRTITRPLAQ LDDAASALARGEVFDPPSTGMDETDRTAQVMAQASVTIHRSSREMAHRVKEAVAQAERSHQALLQGQKLEALGNLTAGIS HEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPN RVTLTLELPEGAWPTVLDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCGMSPE VQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPRMEQAVCAIPEDQDASVRAGRPARVL VVDDDAEVREAMVAMLDELGYQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRLDGVGLAEEVQRLYPTIPIILASG YTTRIATEPAVRVLAKPFSHQALAETLSEILDSNTPAPPAAP
Sequences:
>Translated_762_residues MLRHAQRSKRCASIRNPCAVSIRSRLVWLVIAVIAPAFAFALYGTYAVYRAQSAQVDQGMKEVSRAVALAVDRELSRYAT IVSTLAASPTIVKGDVRTFHERLQQTEHAVGASVVIYDPQGTPLADTDHPFGAPLPSLPDFRTFITTTQADVSPAFRDPV TGAQSIAIRHPVIRGGEVVYYLTMDFPVAGIGALLEQQALPEKWLGVILDQNQTVVARTRDPDKHIGKRASPDFVSQLQA AAGVDGKVQSITRDDVPVTTFFSHAPASGWTALIAIPRNDLLASVLAPLGTVVLGILVVLALAVVLAIAVGRTITRPLAQ LDDAASALARGEVFDPPSTGMDETDRTAQVMAQASVTIHRSSREMAHRVKEAVAQAERSHQALLQGQKLEALGNLTAGIS HEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPN RVTLTLELPEGAWPTVLDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCGMSPE VQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPRMEQAVCAIPEDQDASVRAGRPARVL VVDDDAEVREAMVAMLDELGYQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRLDGVGLAEEVQRLYPTIPIILASG YTTRIATEPAVRVLAKPFSHQALAETLSEILDSNTPAPPAAP >Mature_762_residues MLRHAQRSKRCASIRNPCAVSIRSRLVWLVIAVIAPAFAFALYGTYAVYRAQSAQVDQGMKEVSRAVALAVDRELSRYAT IVSTLAASPTIVKGDVRTFHERLQQTEHAVGASVVIYDPQGTPLADTDHPFGAPLPSLPDFRTFITTTQADVSPAFRDPV TGAQSIAIRHPVIRGGEVVYYLTMDFPVAGIGALLEQQALPEKWLGVILDQNQTVVARTRDPDKHIGKRASPDFVSQLQA AAGVDGKVQSITRDDVPVTTFFSHAPASGWTALIAIPRNDLLASVLAPLGTVVLGILVVLALAVVLAIAVGRTITRPLAQ LDDAASALARGEVFDPPSTGMDETDRTAQVMAQASVTIHRSSREMAHRVKEAVAQAERSHQALLQGQKLEALGNLTAGIS HEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPN RVTLTLELPEGAWPTVLDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCGMSPE VQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPRMEQAVCAIPEDQDASVRAGRPARVL VVDDDAEVREAMVAMLDELGYQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRLDGVGLAEEVQRLYPTIPIILASG YTTRIATEPAVRVLAKPFSHQALAETLSEILDSNTPAPPAAP
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=273, Percent_Identity=28.9377289377289, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI87081816, Length=496, Percent_Identity=26.2096774193548, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1790436, Length=234, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1788713, Length=222, Percent_Identity=26.5765765765766, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 81752; Mature: 81752
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS50885 HAMP ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRHAQRSKRCASIRNPCAVSIRSRLVWLVIAVIAPAFAFALYGTYAVYRAQSAQVDQGM CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KEVSRAVALAVDRELSRYATIVSTLAASPTIVKGDVRTFHERLQQTEHAVGASVVIYDPQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCEEEEECCC GTPLADTDHPFGAPLPSLPDFRTFITTTQADVSPAFRDPVTGAQSIAIRHPVIRGGEVVY CCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCHHCCCCCCCHHEEECCCCCCCCCEEE YLTMDFPVAGIGALLEQQALPEKWLGVILDQNQTVVARTRDPDKHIGKRASPDFVSQLQA EEEECCCHHHHHHHHHHHCCCHHHHHEEECCCCEEEEECCCCHHHCCCCCCHHHHHHHHH AAGVDGKVQSITRDDVPVTTFFSHAPASGWTALIAIPRNDLLASVLAPLGTVVLGILVVL HHCCCCHHHHCCCCCCCCEEHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH ALAVVLAIAVGRTITRPLAQLDDAASALARGEVFDPPSTGMDETDRTAQVMAQASVTIHR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEH SSREMAHRVKEAVAQAERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEML HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSHPRARRAIEGCQRSARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPN HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEEEHHHHHHCCCCC RVTLTLELPEGAWPTVLDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGL CEEEEEECCCCCCCCCCCCHHHHEEEEEEEEEHHHCCCCCCCEEEEEEEEEEEECCCCCE AAGPYLCVDVEDSGCGMSPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQ ECCCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEH SELGKGTRVSLLLPRMEQAVCAIPEDQDASVRAGRPARVLVVDDDAEVREAMVAMLDELG HHCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC YQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRLDGVGLAEEVQRLYPTIPIILASG CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECC YTTRIATEPAVRVLAKPFSHQALAETLSEILDSNTPAPPAAP CCEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MLRHAQRSKRCASIRNPCAVSIRSRLVWLVIAVIAPAFAFALYGTYAVYRAQSAQVDQGM CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH KEVSRAVALAVDRELSRYATIVSTLAASPTIVKGDVRTFHERLQQTEHAVGASVVIYDPQ HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCEEEEECCC GTPLADTDHPFGAPLPSLPDFRTFITTTQADVSPAFRDPVTGAQSIAIRHPVIRGGEVVY CCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCHHCCCCCCCHHEEECCCCCCCCCEEE YLTMDFPVAGIGALLEQQALPEKWLGVILDQNQTVVARTRDPDKHIGKRASPDFVSQLQA EEEECCCHHHHHHHHHHHCCCHHHHHEEECCCCEEEEECCCCHHHCCCCCCHHHHHHHHH AAGVDGKVQSITRDDVPVTTFFSHAPASGWTALIAIPRNDLLASVLAPLGTVVLGILVVL HHCCCCHHHHCCCCCCCCEEHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH ALAVVLAIAVGRTITRPLAQLDDAASALARGEVFDPPSTGMDETDRTAQVMAQASVTIHR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEH SSREMAHRVKEAVAQAERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEML HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TSHPRARRAIEGCQRSARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPN HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEEEHHHHHHCCCCC RVTLTLELPEGAWPTVLDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGL CEEEEEECCCCCCCCCCCCHHHHEEEEEEEEEHHHCCCCCCCEEEEEEEEEEEECCCCCE AAGPYLCVDVEDSGCGMSPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQ ECCCEEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEH SELGKGTRVSLLLPRMEQAVCAIPEDQDASVRAGRPARVLVVDDDAEVREAMVAMLDELG HHCCCCCEEEEECHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC YQVDEAPSADDALARLADRRQPAIDILLSDVVMPGRLDGVGLAEEVQRLYPTIPIILASG CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECC YTTRIATEPAVRVLAKPFSHQALAETLSEILDSNTPAPPAAP CCEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA