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The map label for this gene is ymdF [H]

Identifier: 146283450

GI number: 146283450

Start: 3361887

End: 3362057

Strand: Direct

Name: ymdF [H]

Synonym: PST_3123

Alternate gene names: 146283450

Gene position: 3361887-3362057 (Clockwise)

Preceding gene: 146283449

Following gene: 146283451

Centisome position: 73.61

GC content: 62.57

Gene sequence:

>171_bases
ATGGCAAATAACAACCCTGGCAACTTCGCCAACGATCGAGAGAAAGCTTCCGAAGCCGGCCGCAAGGGCGGTCACAACAG
TGGCGGCAACTTTGCCAATGACCGCGAGAAGGCCTCCGAGGCCGGCCGCAAGGGTGGCCAGAACAGCCACGGCGGTGGCC
GCAGCAGCTAA

Upstream 100 bases:

>100_bases
AAACTCCTGTGGCGATACCCCCTCTGAGACAGTGAAGGCTGATTGATCTCTCTCTTTCAGCCGTTTGTGAAAGTGTCTAT
CCAATCGAGGAGAAAAACAC

Downstream 100 bases:

>100_bases
CTAACGCTACGGCAAAACAGAAAAGGCAGGCGCTTCGGCACCTGCCTTTTCTTATTTAACAGAGTCTCAAACCCGTCACC
GACAGATATTATTATCTTTT

Product: general stress protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 55

Protein sequence:

>56_residues
MANNNPGNFANDREKASEAGRKGGHNSGGNFANDREKASEAGRKGGQNSHGGGRSS

Sequences:

>Translated_56_residues
MANNNPGNFANDREKASEAGRKGGHNSGGNFANDREKASEAGRKGGQNSHGGGRSS
>Mature_55_residues
ANNNPGNFANDREKASEAGRKGGHNSGGNFANDREKASEAGRKGGQNSHGGGRSS

Specific function: Unknown

COG id: COG3729

COG function: function code R; General stress protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the con-10 family [H]

Homologues:

Organism=Escherichia coli, GI87081817, Length=53, Percent_Identity=67.9245283018868, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019626 [H]

Pfam domain/function: PF10685 KGG [H]

EC number: NA

Molecular weight: Translated: 5715; Mature: 5584

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNNPGNFANDREKASEAGRKGGHNSGGNFANDREKASEAGRKGGQNSHGGGRSS
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ANNNPGNFANDREKASEAGRKGGHNSGGNFANDREKASEAGRKGGQNSHGGGRSS
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]