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The map label for this gene is yjdF [H]

Identifier: 146283350

GI number: 146283350

Start: 3252871

End: 3253533

Strand: Direct

Name: yjdF [H]

Synonym: PST_3020

Alternate gene names: 146283350

Gene position: 3252871-3253533 (Clockwise)

Preceding gene: 146283349

Following gene: 146283351

Centisome position: 71.22

GC content: 65.46

Gene sequence:

>663_bases
ATGCTGCCGGCTGGTTGGGCCATGCTGGCAACTTCGATGCAGGACAGAACGCTTCACCTGACGCTCGGCACTCTCGTGCT
GCTGGCGCTGATCGCCTCGGCCATCGCGCCATACGATCGCGCCACCTGGCTGCTGGAGGTCGCACCGGTACTGATCGCCG
CGCCGGTGCTGCTGCTCAGTCATCGGTCGTTTCCGCTGACCCGCCTGCTCTACGTCGTGATCGCCATTCACGCACTGATC
CTAATTCTCGGCGGGACCTATACCTATGCCAGGGTACCGCCGGGGTTCTGGGTGCAGGAATGGTTCGACCTCAGCCGCAA
CCCCTACGACAAGCTCGGGCATTTTATCCAGGGCGTGACGCCGGCCCTGCTCGCCAGGGAAATCCTGTTGCGCCTGCGCT
TCGTCGTGCCGGGGAAGATGCTGGGCTTTCTCGCGGTCTGCGTCGCGCTGGCATTCAGCGCCTTCTATGAGCTGATCGAG
TGGTGGGTGGCGCTGCTGGCGGGACAGGGCGCCGTGGACTTCCTCGGCACCCAGGGCGATCCCTGGGATACCCAGTCCGA
CATGCTCATGGCGCTGCTCGGTGCGCTACTGTCGGTCAGCCTGCTGGCCGGCAGGCAGGACCGGCAGATCGAGCATCTGC
AGCGTGCCGGCGCGGCGGACTGA

Upstream 100 bases:

>100_bases
GTCGATCTGCAGCGCTGTAACCGTGCGCTGTCCCATTCAGCGAAACGCACCGACGGCCAGGGTTAACCGGCGTCGGTTGC
ACGCCGCCCGGCGCCGCTGC

Downstream 100 bases:

>100_bases
CGCCATGCTCTATCGGATCGGTGCCGACGCCGTGCTGCTGTTGCACCTGAGCTTCATCCTTTTCGTGCTGTTCGGCGGTC
TGCTGGTGGCCTGGAGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLPAGWAMLATSMQDRTLHLTLGTLVLLALIASAIAPYDRATWLLEVAPVLIAAPVLLLSHRSFPLTRLLYVVIAIHALI
LILGGTYTYARVPPGFWVQEWFDLSRNPYDKLGHFIQGVTPALLAREILLRLRFVVPGKMLGFLAVCVALAFSAFYELIE
WWVALLAGQGAVDFLGTQGDPWDTQSDMLMALLGALLSVSLLAGRQDRQIEHLQRAGAAD

Sequences:

>Translated_220_residues
MLPAGWAMLATSMQDRTLHLTLGTLVLLALIASAIAPYDRATWLLEVAPVLIAAPVLLLSHRSFPLTRLLYVVIAIHALI
LILGGTYTYARVPPGFWVQEWFDLSRNPYDKLGHFIQGVTPALLAREILLRLRFVVPGKMLGFLAVCVALAFSAFYELIE
WWVALLAGQGAVDFLGTQGDPWDTQSDMLMALLGALLSVSLLAGRQDRQIEHLQRAGAAD
>Mature_220_residues
MLPAGWAMLATSMQDRTLHLTLGTLVLLALIASAIAPYDRATWLLEVAPVLIAAPVLLLSHRSFPLTRLLYVVIAIHALI
LILGGTYTYARVPPGFWVQEWFDLSRNPYDKLGHFIQGVTPALLAREILLRLRFVVPGKMLGFLAVCVALAFSAFYELIE
WWVALLAGQGAVDFLGTQGDPWDTQSDMLMALLGALLSVSLLAGRQDRQIEHLQRAGAAD

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=186, Percent_Identity=61.8279569892473, Blast_Score=230, Evalue=6e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 24160; Mature: 24160

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAGWAMLATSMQDRTLHLTLGTLVLLALIASAIAPYDRATWLLEVAPVLIAAPVLLLS
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
HRSFPLTRLLYVVIAIHALILILGGTYTYARVPPGFWVQEWFDLSRNPYDKLGHFIQGVT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCC
PALLAREILLRLRFVVPGKMLGFLAVCVALAFSAFYELIEWWVALLAGQGAVDFLGTQGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
PWDTQSDMLMALLGALLSVSLLAGRQDRQIEHLQRAGAAD
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MLPAGWAMLATSMQDRTLHLTLGTLVLLALIASAIAPYDRATWLLEVAPVLIAAPVLLLS
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
HRSFPLTRLLYVVIAIHALILILGGTYTYARVPPGFWVQEWFDLSRNPYDKLGHFIQGVT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHCCC
PALLAREILLRLRFVVPGKMLGFLAVCVALAFSAFYELIEWWVALLAGQGAVDFLGTQGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
PWDTQSDMLMALLGALLSVSLLAGRQDRQIEHLQRAGAAD
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]