Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 146282806

GI number: 146282806

Start: 2690024

End: 2692231

Strand: Direct

Name: ylbK [H]

Synonym: PST_2465

Alternate gene names: 146282806

Gene position: 2690024-2692231 (Clockwise)

Preceding gene: 146282804

Following gene: 146282809

Centisome position: 58.9

GC content: 64.72

Gene sequence:

>2208_bases
GTGCATACCTCTGGTTCGACCATGTTTCGCCTGCTCGCTTTCCTGCTCCTCGTTGTCTGCCTGCCAGCTGCCTTTGCCGA
AACGGCCCAACCCAGGACCGGCCTGGTGCTGTCCGGCGGCGCCGCGCGCGGGCTGGCCCATGTCGGGGTGCTGAAAGCCC
TGGAGGAACAGGGCGTGCGCATCGACGCCATCGCCGGCACCAGCATGGGCGCAGTGGTCGGCGGGCTCTACGCGGCGGGC
TATAGCGTGGCCGAGCTGGAGCGACTGGCGCTCACCCTCGACTGGCAGCAGGTGCTGTCCGACGACCCGCCGCGCCAGGA
CATTCCCTACCGGCGCAAGCAGGACGACCGCGACTTTCTCATCAAGCAAAAGCTCAGCTTTCGCGACGACGGCAGCCTCG
GCCTGCCACTGGGCGTGATCCAAGGCCAGAACCTCGCACTGCTGCTCGAACGCCTGCTGGTGCATGCCAGCGACACCCGC
GATTTCGACCAGCTGCCGATTCCGTTCCGCGCCGTGGCCACCGACATCGCCAATGACGAAAAGGTGGTCTTCCGCCGCGG
CCACCTGCCCCAGGTGATCCGCGCGAGCATGTCGATCCCCGCGGTGTTCGCGCCGGTGGAGATCGATGACCGGCTGCTCG
TCGACGGCGGCATGGTGGACAACATCCCCATGGATGTGGCGCGTGACATGGGCGTCGACCGTTTGATCGTGGTGGATATC
GGTACTCCGCTCAAACCGCGCAAGGAGCTGGTGACCGTGGTCGATGTGCTCAACCAGACCACTACCATGATGACCCGGCG
TAATTCCGAAGCGCAGCTGGCCACGCTGCAGCCGCAGGACGTGCTGATCCAGCCGCCGCTGGCCGCCTATGGCTCTACCG
ACTTCGCCCGCGCCGAGCAGTTGGTCGATGCCGGCTATCGTGCGACGCTCGCGCTGCAAGGACGACTGGCCGAAATGCGC
ACGACGACTGGCGGTAATCCGGCATTGAGCCTCGCGCGCTCCGGCGACCCGCGCACACCGGTCATCACCGCGATCCGGGT
GGAAAACGACTCCAAGGTCGGCGATGCGGTGATCCGGCGGCATATCCGCCAGCCGCTGGGCGAGCCGTTGGACCTGGAGC
GCCTGCAAAAGGACATGGGCACGCTCTACGGCCTGGATTACTTCGAGCGGGTCGAATATCGCGTCCAGCGCGGAAAACTC
GGCAACACCCTGGTCATCAACGCACGCGAGAAGCGCAGCGGAACCGACTACCTGCGCCTGGGGCTGAGCCTTTCCGATGA
TTTTCAGGGCGACAGCGTGTTCAACCTGGGCGCCAGCTACCGTAAGAACGGCATCAACCAGCTCGGCGCCGAATGGCTGA
CCCGTCTGCAGCTGGGGGATCGCCAGGAGCTCTATAGCGAGTTCTACCAGCCGCTGGACGCCGGTTCGCGCTGGTTCGCC
GCACCGAACCTGTTCATCGAGGCGCAGAACGTCGAGGCCATTCTCGACAACGACCCGATCGCCGAATACCGCCTGCAGCG
CTACGGCTACGGTCTCAATCTCGGCCGGCAGATCGCCAATAACGGCGAGATCCGCTTCGGTATCGGCCAGGCCTGGGGGG
AAGCGGACGTGCGGATCGGCGAGCGCGATCTGCCGGACTTCAGCTTCACCGAAGGCTATTACGAGATGCAGTATTCGTTC
GATACGCTGGACAATATCGACTTTCCCCGCGAGGGCGAGGATATCCGTCTGACCTTGCGTCAATACGACCCGAGCCTCAG
CTCCGACCAGCGCTATCGACAGTGGAACATCAAGCTGGACAAGGCGCTCAGCCATGGTGCCAACACCTGGGTGCTGGGCG
GTCTCTACGGTCGCACCCTGGACGACGCCGAGGTGGTCACCTCGAGCTTCCTGCTCGGTGGCGCGCGCCAGCTATCGGGC
TTTCGTCAGGACGCGCTGTCGGGGCAGAACGTCAGTCTCGGGCGTGTGGTGTATTACCGCCGGGTGACGCCGCGCGCCTT
CCAGCCGCTGGACTTTCCGCTCTATCTCGGCGGATCGCTCGAGCGCGGCCGGGCCTGGAACAACGACAACGCCTTCGACA
GCGGCTACATCAACGCCGCGAGCATCTTCCTCGGCTACGACACGCCGTTGGGCCCACTGAACTTCGGTTACGGCATCAAC
GACGAGGACGAGCAGGCGCTTTACATGAATCTGGGACGCAGCTTCTAG

Upstream 100 bases:

>100_bases
TGGCACTGGGTGCAATAGGTGATGATAATTTCAGGCTTGGCAGGACTCATGCGCGGCGCCTCCGGCTGGTTGAGTGCCGC
CTATAATAGCCGCCTCTCCC

Downstream 100 bases:

>100_bases
CGCTTGTCCAGATTGGCGAGGATGCGCGCGTGCACCTGCTGGCACTTGCGCAGGTCCTCTTCGTCGATCCCGGCAAAGGC
CTCCTGGCGGACCTGCGTCG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MHTSGSTMFRLLAFLLLVVCLPAAFAETAQPRTGLVLSGGAARGLAHVGVLKALEEQGVRIDAIAGTSMGAVVGGLYAAG
YSVAELERLALTLDWQQVLSDDPPRQDIPYRRKQDDRDFLIKQKLSFRDDGSLGLPLGVIQGQNLALLLERLLVHASDTR
DFDQLPIPFRAVATDIANDEKVVFRRGHLPQVIRASMSIPAVFAPVEIDDRLLVDGGMVDNIPMDVARDMGVDRLIVVDI
GTPLKPRKELVTVVDVLNQTTTMMTRRNSEAQLATLQPQDVLIQPPLAAYGSTDFARAEQLVDAGYRATLALQGRLAEMR
TTTGGNPALSLARSGDPRTPVITAIRVENDSKVGDAVIRRHIRQPLGEPLDLERLQKDMGTLYGLDYFERVEYRVQRGKL
GNTLVINAREKRSGTDYLRLGLSLSDDFQGDSVFNLGASYRKNGINQLGAEWLTRLQLGDRQELYSEFYQPLDAGSRWFA
APNLFIEAQNVEAILDNDPIAEYRLQRYGYGLNLGRQIANNGEIRFGIGQAWGEADVRIGERDLPDFSFTEGYYEMQYSF
DTLDNIDFPREGEDIRLTLRQYDPSLSSDQRYRQWNIKLDKALSHGANTWVLGGLYGRTLDDAEVVTSSFLLGGARQLSG
FRQDALSGQNVSLGRVVYYRRVTPRAFQPLDFPLYLGGSLERGRAWNNDNAFDSGYINAASIFLGYDTPLGPLNFGYGIN
DEDEQALYMNLGRSF

Sequences:

>Translated_735_residues
MHTSGSTMFRLLAFLLLVVCLPAAFAETAQPRTGLVLSGGAARGLAHVGVLKALEEQGVRIDAIAGTSMGAVVGGLYAAG
YSVAELERLALTLDWQQVLSDDPPRQDIPYRRKQDDRDFLIKQKLSFRDDGSLGLPLGVIQGQNLALLLERLLVHASDTR
DFDQLPIPFRAVATDIANDEKVVFRRGHLPQVIRASMSIPAVFAPVEIDDRLLVDGGMVDNIPMDVARDMGVDRLIVVDI
GTPLKPRKELVTVVDVLNQTTTMMTRRNSEAQLATLQPQDVLIQPPLAAYGSTDFARAEQLVDAGYRATLALQGRLAEMR
TTTGGNPALSLARSGDPRTPVITAIRVENDSKVGDAVIRRHIRQPLGEPLDLERLQKDMGTLYGLDYFERVEYRVQRGKL
GNTLVINAREKRSGTDYLRLGLSLSDDFQGDSVFNLGASYRKNGINQLGAEWLTRLQLGDRQELYSEFYQPLDAGSRWFA
APNLFIEAQNVEAILDNDPIAEYRLQRYGYGLNLGRQIANNGEIRFGIGQAWGEADVRIGERDLPDFSFTEGYYEMQYSF
DTLDNIDFPREGEDIRLTLRQYDPSLSSDQRYRQWNIKLDKALSHGANTWVLGGLYGRTLDDAEVVTSSFLLGGARQLSG
FRQDALSGQNVSLGRVVYYRRVTPRAFQPLDFPLYLGGSLERGRAWNNDNAFDSGYINAASIFLGYDTPLGPLNFGYGIN
DEDEQALYMNLGRSF
>Mature_735_residues
MHTSGSTMFRLLAFLLLVVCLPAAFAETAQPRTGLVLSGGAARGLAHVGVLKALEEQGVRIDAIAGTSMGAVVGGLYAAG
YSVAELERLALTLDWQQVLSDDPPRQDIPYRRKQDDRDFLIKQKLSFRDDGSLGLPLGVIQGQNLALLLERLLVHASDTR
DFDQLPIPFRAVATDIANDEKVVFRRGHLPQVIRASMSIPAVFAPVEIDDRLLVDGGMVDNIPMDVARDMGVDRLIVVDI
GTPLKPRKELVTVVDVLNQTTTMMTRRNSEAQLATLQPQDVLIQPPLAAYGSTDFARAEQLVDAGYRATLALQGRLAEMR
TTTGGNPALSLARSGDPRTPVITAIRVENDSKVGDAVIRRHIRQPLGEPLDLERLQKDMGTLYGLDYFERVEYRVQRGKL
GNTLVINAREKRSGTDYLRLGLSLSDDFQGDSVFNLGASYRKNGINQLGAEWLTRLQLGDRQELYSEFYQPLDAGSRWFA
APNLFIEAQNVEAILDNDPIAEYRLQRYGYGLNLGRQIANNGEIRFGIGQAWGEADVRIGERDLPDFSFTEGYYEMQYSF
DTLDNIDFPREGEDIRLTLRQYDPSLSSDQRYRQWNIKLDKALSHGANTWVLGGLYGRTLDDAEVVTSSFLLGGARQLSG
FRQDALSGQNVSLGRVVYYRRVTPRAFQPLDFPLYLGGSLERGRAWNNDNAFDSGYINAASIFLGYDTPLGPLNFGYGIN
DEDEQALYMNLGRSF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=307, Percent_Identity=27.3615635179153, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI260656043, Length=307, Percent_Identity=27.3615635179153, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI260656041, Length=307, Percent_Identity=27.3615635179153, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI116256487, Length=307, Percent_Identity=27.3615635179153, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI260656037, Length=307, Percent_Identity=27.3615635179153, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI148727335, Length=311, Percent_Identity=29.2604501607717, Blast_Score=104, Evalue=3e-22,
Organism=Homo sapiens, GI148727290, Length=311, Percent_Identity=29.2604501607717, Blast_Score=104, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71997289, Length=201, Percent_Identity=28.3582089552239, Blast_Score=76, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71997299, Length=201, Percent_Identity=28.3582089552239, Blast_Score=76, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=53, Percent_Identity=56.6037735849057, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 81637; Mature: 81637

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTSGSTMFRLLAFLLLVVCLPAAFAETAQPRTGLVLSGGAARGLAHVGVLKALEEQGVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCE
IDAIAGTSMGAVVGGLYAAGYSVAELERLALTLDWQQVLSDDPPRQDIPYRRKQDDRDFL
EEEECCCCHHHHHHHHHHCCCCHHHHHHHHEEECHHHHHCCCCCCCCCCCCCCCCCHHHH
IKQKLSFRDDGSLGLPLGVIQGQNLALLLERLLVHASDTRDFDQLPIPFRAVATDIANDE
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
KVVFRRGHLPQVIRASMSIPAVFAPVEIDDRLLVDGGMVDNIPMDVARDMGVDRLIVVDI
EEEEECCCCHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEC
GTPLKPRKELVTVVDVLNQTTTMMTRRNSEAQLATLQPQDVLIQPPLAAYGSTDFARAEQ
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCHHHCCCCHHHHHHH
LVDAGYRATLALQGRLAEMRTTTGGNPALSLARSGDPRTPVITAIRVENDSKVGDAVIRR
HHHCCCEEEEEECCHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHH
HIRQPLGEPLDLERLQKDMGTLYGLDYFERVEYRVQRGKLGNTLVINAREKRSGTDYLRL
HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEE
GLSLSDDFQGDSVFNLGASYRKNGINQLGAEWLTRLQLGDRQELYSEFYQPLDAGSRWFA
ECCCCCCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
APNLFIEAQNVEAILDNDPIAEYRLQRYGYGLNLGRQIANNGEIRFGIGQAWGEADVRIG
CCCEEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCEEC
ERDLPDFSFTEGYYEMQYSFDTLDNIDFPREGEDIRLTLRQYDPSLSSDQRYRQWNIKLD
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEECCCHH
KALSHGANTWVLGGLYGRTLDDAEVVTSSFLLGGARQLSGFRQDALSGQNVSLGRVVYYR
HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECEEEEEE
RVTPRAFQPLDFPLYLGGSLERGRAWNNDNAFDSGYINAASIFLGYDTPLGPLNFGYGIN
ECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
DEDEQALYMNLGRSF
CCCCCCHHHHCCCCC
>Mature Secondary Structure
MHTSGSTMFRLLAFLLLVVCLPAAFAETAQPRTGLVLSGGAARGLAHVGVLKALEEQGVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCE
IDAIAGTSMGAVVGGLYAAGYSVAELERLALTLDWQQVLSDDPPRQDIPYRRKQDDRDFL
EEEECCCCHHHHHHHHHHCCCCHHHHHHHHEEECHHHHHCCCCCCCCCCCCCCCCCHHHH
IKQKLSFRDDGSLGLPLGVIQGQNLALLLERLLVHASDTRDFDQLPIPFRAVATDIANDE
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
KVVFRRGHLPQVIRASMSIPAVFAPVEIDDRLLVDGGMVDNIPMDVARDMGVDRLIVVDI
EEEEECCCCHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCHHHHHHCCCCEEEEEEC
GTPLKPRKELVTVVDVLNQTTTMMTRRNSEAQLATLQPQDVLIQPPLAAYGSTDFARAEQ
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCHHHCCCCHHHHHHH
LVDAGYRATLALQGRLAEMRTTTGGNPALSLARSGDPRTPVITAIRVENDSKVGDAVIRR
HHHCCCEEEEEECCHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHH
HIRQPLGEPLDLERLQKDMGTLYGLDYFERVEYRVQRGKLGNTLVINAREKRSGTDYLRL
HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCEEEE
GLSLSDDFQGDSVFNLGASYRKNGINQLGAEWLTRLQLGDRQELYSEFYQPLDAGSRWFA
ECCCCCCCCCCCEEECCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
APNLFIEAQNVEAILDNDPIAEYRLQRYGYGLNLGRQIANNGEIRFGIGQAWGEADVRIG
CCCEEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHCCCCCEEEECCCCCCCCCCEEC
ERDLPDFSFTEGYYEMQYSFDTLDNIDFPREGEDIRLTLRQYDPSLSSDQRYRQWNIKLD
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEECCCHH
KALSHGANTWVLGGLYGRTLDDAEVVTSSFLLGGARQLSGFRQDALSGQNVSLGRVVYYR
HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEECEEEEEE
RVTPRAFQPLDFPLYLGGSLERGRAWNNDNAFDSGYINAASIFLGYDTPLGPLNFGYGIN
ECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
DEDEQALYMNLGRSF
CCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]