| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is nasD [H]
Identifier: 146282750
GI number: 146282750
Start: 2631627
End: 2634092
Strand: Direct
Name: nasD [H]
Synonym: PST_2409
Alternate gene names: 146282750
Gene position: 2631627-2634092 (Clockwise)
Preceding gene: 146282748
Following gene: 146282751
Centisome position: 57.62
GC content: 63.79
Gene sequence:
>2466_bases ATGAAGAAACTCAAACTGGTGATGATCGGCAACGGCATGGCCGGCGTGCGAACCCTCGAAGAGCTGCTCAAGCTGACCGA CGAGCTCTACGACATCACGGTGTTCGGCGCCGAGCCGCATCCCAACTACAACCGCATCCTGCTCTCCCCCGTGCTGGCCG GCGAGCAGCAGTTCGAAGAGATCGTGCTCAACGACCTGGACTGGTACGCCGAGAACGGCATTCGCCTGATGCTCAAGCGC AAGGTGGTGAAGATCGATCGCGCCCGTCGCCGGGTCATCGCCGACGACGGCAGCGAGGCCGAATATGACCGCCTCCTTAT CGCCACCGGCTCCAATCCGTTCATCCTGCCCATTCCCGGTAACGACCTTCAGGGAGTGATTGGTTACCGCGACATCGCCG ATACCCAGGTGATGATGGAAACCGCCAAGACCCACAAGCACGCGGTGGTCATTGGCGGCGGCCTGCTCGGCCTAGAGGCG GCCAATGGCCTCAAGCTGCGCGGGATGGATGTGACCGTGGTGCACATCGGTGACTGGCTGATGGAGCGCCAGCTGGACAA GACCGCTGGCACCCTGCTGCAGAGCGCCCTGGAGAGCCGCGGCCTGAAGTTCCTGCTGCCAAAGCAGACAGCCGAGCTGA TCGGCAACGGCGAAGGCCGCGTCAAGGCCGTACGCTTCGCTGATGGCGAGGTGATTCCCGCTGACCTGGTGGTGATGGCC GCCGGCATCCGCCCCAACAGCGAGCTGGCCGAGCAAGCAGGCCTGCCTTGCAACCGCGGCATCCTGGTCAACGACACCCT GCAGACCTACGATCCGCGCATCTACGCCGTCGGCGAATGTGCCAATCATCGCGGCACCGCCTATGGCCTGGTCGCTCCGC TGTTCGAACAGGCCAAGGTCTGCGCCAACCACCTCGCCATGCTCGGCTTTTCCCGCTATCTCGGCTCGGTGACTTCGACC AAGCTCAAGGTTACCGGCATCGACCTGTTCTCGGCCGGCGATTTCATCGGCGGCGAAGGCACAGAGACCATCACCCTCTC CGACCCCATCGGCGGCGTATACAAGAAACTGGTGATCAAGGATGACGTGCTGGTCGGTGCCTGCCTCTACGGCGACACCG CCGACGGCGGCTGGTACTTCCGCCAGGTGCGCGAGGGCCAGAACGTCGCGCAGATCCGCGACCATCTGATGTTTGGCGCG GCCGGCTTAGGCGAGGGCGCCATCGGCGATGCCGGCCATCAGGGCCAGAGCAAGACCATGTCCATGCCGGACGACATGGA AGTCTGCGGCTGCAACGGGGTGTGCAAGGGCACCATCGTCAAGGCGGTCCAGGAGCACGGGCTGTTCTCGGTGGACGAGG TGAAAAAGCACACCAAGGCCGCCAGTTCCTGTGGTTCCTGCACCGGGCTGGTCGAACAGATTCTGATCAACACCGTGGGC GGCGCGGCCGACGTCAAGCCGAAGAGCGAGAAGGCCATCTGCGGCTGCAGCGACCTCAACCATGGCCAGGTGCGCAAGGC CATTCGCGAGCACCACCTGATCAGCATCCCGGCGGCCATGGCCTTCATGGAATGGCGCACGCCGAACGGCTGCGCCACCT GCCGCCCGGCGCTGAACTACTACCTGATCTCCACCTGGCCGGGCGAGGCCAAGGACGATCCGCAGTCACGTTTCATCAAC GAGCGAGCCCACGCCAACATCCAGAAGGACGGCACCTACTCCGTGGTGCCGCGGATGTGGGGTGGCGTCACCAATGCCGC CGAGCTGCGACGCATCGCCGACGTGGCGGACAAGTACCAAGTGCCGATGGTCAAGGTCACTGGCGGCCAGCGCATCGACC TGCTGGGTATCCGCAAGGAAGACCTGCCGGGCGTCTGGAAAGACCTGGACATGCCTTCCGGCCACGCCTACGGCAAATCC ATCCGCACCGTGAAGACCTGCGTCGGCAGCGAGTTCTGCCGCTTCGGCACGCAGAACTCGACGCAGATGGGCATCGACCT GGAACACGCGCTGTTCAACATGTGGTCGCCGCACAAGGTCAAGCTGGCCGTCTCCGGCTGCCCGCGCAATTGCGCCGAAT CCGGCATCAAGGACGTGGGTATCATCGGTGTGGACTCCGGCTGGGAGCTGTACATCGGCGGCAACGGCGGCATCAAGACC GAGGCCGGCGAGTTCTTCGTCAAGGTGAAGAGCGCCGAGGAGGTCATGGAATACAGCCTGGCGTTCCTCCAGCTCTACCG CGAGGAAGCCTTCTACCTCGAACGCACCGTGCACTACCTGCAGCGCGTCGGCATGGATCACATCAAACAGGCCGTGCTGA ACGATGCCGAGCGGCGCAAGGCGCTGCACCAGCGGCTGCTGTTCTCGCTTTCCTTCGAGCAGGACCCGTGGCAGGAGCAG CTTTCCAAGCCGCAGCTGAAGAAGGAATTCGACCGCATCGCCGTCAAGCAGCTGGAAAACGCCTGA
Upstream 100 bases:
>100_bases ACAAAGGCGTCCTCACCGGAGAACCGGTGGGACGCCTTTTTTGTTGCTGAAAAGAATTCGAGCAGGCCAGACGGCGAACC GGATGGCACGGAGAACGGGC
Downstream 100 bases:
>100_bases GCACCGACCTGGAGGGACACCGCATGAACTGGCTCGATATCTGCGCACTGGATGAGATCAACCCGCTCGGCTCGCGCATC GTCGCCAGCCCCAAGGGTGA
Product: assimilatory nitrite reductase large subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MKKLKLVMIGNGMAGVRTLEELLKLTDELYDITVFGAEPHPNYNRILLSPVLAGEQQFEEIVLNDLDWYAENGIRLMLKR KVVKIDRARRRVIADDGSEAEYDRLLIATGSNPFILPIPGNDLQGVIGYRDIADTQVMMETAKTHKHAVVIGGGLLGLEA ANGLKLRGMDVTVVHIGDWLMERQLDKTAGTLLQSALESRGLKFLLPKQTAELIGNGEGRVKAVRFADGEVIPADLVVMA AGIRPNSELAEQAGLPCNRGILVNDTLQTYDPRIYAVGECANHRGTAYGLVAPLFEQAKVCANHLAMLGFSRYLGSVTST KLKVTGIDLFSAGDFIGGEGTETITLSDPIGGVYKKLVIKDDVLVGACLYGDTADGGWYFRQVREGQNVAQIRDHLMFGA AGLGEGAIGDAGHQGQSKTMSMPDDMEVCGCNGVCKGTIVKAVQEHGLFSVDEVKKHTKAASSCGSCTGLVEQILINTVG GAADVKPKSEKAICGCSDLNHGQVRKAIREHHLISIPAAMAFMEWRTPNGCATCRPALNYYLISTWPGEAKDDPQSRFIN ERAHANIQKDGTYSVVPRMWGGVTNAAELRRIADVADKYQVPMVKVTGGQRIDLLGIRKEDLPGVWKDLDMPSGHAYGKS IRTVKTCVGSEFCRFGTQNSTQMGIDLEHALFNMWSPHKVKLAVSGCPRNCAESGIKDVGIIGVDSGWELYIGGNGGIKT EAGEFFVKVKSAEEVMEYSLAFLQLYREEAFYLERTVHYLQRVGMDHIKQAVLNDAERRKALHQRLLFSLSFEQDPWQEQ LSKPQLKKEFDRIAVKQLENA
Sequences:
>Translated_821_residues MKKLKLVMIGNGMAGVRTLEELLKLTDELYDITVFGAEPHPNYNRILLSPVLAGEQQFEEIVLNDLDWYAENGIRLMLKR KVVKIDRARRRVIADDGSEAEYDRLLIATGSNPFILPIPGNDLQGVIGYRDIADTQVMMETAKTHKHAVVIGGGLLGLEA ANGLKLRGMDVTVVHIGDWLMERQLDKTAGTLLQSALESRGLKFLLPKQTAELIGNGEGRVKAVRFADGEVIPADLVVMA AGIRPNSELAEQAGLPCNRGILVNDTLQTYDPRIYAVGECANHRGTAYGLVAPLFEQAKVCANHLAMLGFSRYLGSVTST KLKVTGIDLFSAGDFIGGEGTETITLSDPIGGVYKKLVIKDDVLVGACLYGDTADGGWYFRQVREGQNVAQIRDHLMFGA AGLGEGAIGDAGHQGQSKTMSMPDDMEVCGCNGVCKGTIVKAVQEHGLFSVDEVKKHTKAASSCGSCTGLVEQILINTVG GAADVKPKSEKAICGCSDLNHGQVRKAIREHHLISIPAAMAFMEWRTPNGCATCRPALNYYLISTWPGEAKDDPQSRFIN ERAHANIQKDGTYSVVPRMWGGVTNAAELRRIADVADKYQVPMVKVTGGQRIDLLGIRKEDLPGVWKDLDMPSGHAYGKS IRTVKTCVGSEFCRFGTQNSTQMGIDLEHALFNMWSPHKVKLAVSGCPRNCAESGIKDVGIIGVDSGWELYIGGNGGIKT EAGEFFVKVKSAEEVMEYSLAFLQLYREEAFYLERTVHYLQRVGMDHIKQAVLNDAERRKALHQRLLFSLSFEQDPWQEQ LSKPQLKKEFDRIAVKQLENA >Mature_821_residues MKKLKLVMIGNGMAGVRTLEELLKLTDELYDITVFGAEPHPNYNRILLSPVLAGEQQFEEIVLNDLDWYAENGIRLMLKR KVVKIDRARRRVIADDGSEAEYDRLLIATGSNPFILPIPGNDLQGVIGYRDIADTQVMMETAKTHKHAVVIGGGLLGLEA ANGLKLRGMDVTVVHIGDWLMERQLDKTAGTLLQSALESRGLKFLLPKQTAELIGNGEGRVKAVRFADGEVIPADLVVMA AGIRPNSELAEQAGLPCNRGILVNDTLQTYDPRIYAVGECANHRGTAYGLVAPLFEQAKVCANHLAMLGFSRYLGSVTST KLKVTGIDLFSAGDFIGGEGTETITLSDPIGGVYKKLVIKDDVLVGACLYGDTADGGWYFRQVREGQNVAQIRDHLMFGA AGLGEGAIGDAGHQGQSKTMSMPDDMEVCGCNGVCKGTIVKAVQEHGLFSVDEVKKHTKAASSCGSCTGLVEQILINTVG GAADVKPKSEKAICGCSDLNHGQVRKAIREHHLISIPAAMAFMEWRTPNGCATCRPALNYYLISTWPGEAKDDPQSRFIN ERAHANIQKDGTYSVVPRMWGGVTNAAELRRIADVADKYQVPMVKVTGGQRIDLLGIRKEDLPGVWKDLDMPSGHAYGKS IRTVKTCVGSEFCRFGTQNSTQMGIDLEHALFNMWSPHKVKLAVSGCPRNCAESGIKDVGIIGVDSGWELYIGGNGGIKT EAGEFFVKVKSAEEVMEYSLAFLQLYREEAFYLERTVHYLQRVGMDHIKQAVLNDAERRKALHQRLLFSLSFEQDPWQEQ LSKPQLKKEFDRIAVKQLENA
Specific function: Required for nitrite assimilation [H]
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=281, Percent_Identity=29.1814946619217, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI226437568, Length=278, Percent_Identity=29.4964028776978, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI65787454, Length=278, Percent_Identity=29.4964028776978, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI22202629, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=5e-13, Organism=Homo sapiens, GI4757732, Length=231, Percent_Identity=28.1385281385281, Blast_Score=74, Evalue=6e-13, Organism=Escherichia coli, GI1789765, Length=834, Percent_Identity=35.0119904076739, Blast_Score=435, Evalue=1e-123, Organism=Escherichia coli, GI1789065, Length=322, Percent_Identity=29.8136645962733, Blast_Score=119, Evalue=1e-27, Organism=Escherichia coli, GI1788892, Length=288, Percent_Identity=26.7361111111111, Blast_Score=99, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17559934, Length=404, Percent_Identity=25.7425742574257, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI281359715, Length=281, Percent_Identity=26.6903914590747, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI281359713, Length=281, Percent_Identity=26.6903914590747, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI24639250, Length=281, Percent_Identity=26.6903914590747, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI18543267, Length=281, Percent_Identity=26.6903914590747, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI24639252, Length=281, Percent_Identity=26.6903914590747, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI24639257, Length=281, Percent_Identity=26.6903914590747, Blast_Score=112, Evalue=8e-25, Organism=Drosophila melanogaster, GI24585130, Length=281, Percent_Identity=25.6227758007117, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI21358499, Length=241, Percent_Identity=28.6307053941909, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581020, Length=305, Percent_Identity=27.2131147540984, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573993, Length=305, Percent_Identity=27.2131147540984, Blast_Score=71, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR017121 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.7.1.4 [H]
Molecular weight: Translated: 89897; Mature: 89897
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLKLVMIGNGMAGVRTLEELLKLTDELYDITVFGAEPHPNYNRILLSPVLAGEQQFEE CCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEEEHHHCCHHHHHH IVLNDLDWYAENGIRLMLKRKVVKIDRARRRVIADDGSEAEYDRLLIATGSNPFILPIPG HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCC NDLQGVIGYRDIADTQVMMETAKTHKHAVVIGGGLLGLEAANGLKLRGMDVTVVHIGDWL CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCEEEECCEEEEEEHHHHH MERQLDKTAGTLLQSALESRGLKFLLPKQTAELIGNGEGRVKAVRFADGEVIPADLVVMA HHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEE AGIRPNSELAEQAGLPCNRGILVNDTLQTYDPRIYAVGECANHRGTAYGLVAPLFEQAKV CCCCCCHHHHHHCCCCCCCCEEEECCHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH CANHLAMLGFSRYLGSVTSTKLKVTGIDLFSAGDFIGGEGTETITLSDPIGGVYKKLVIK HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHEE DDVLVGACLYGDTADGGWYFRQVREGQNVAQIRDHLMFGAAGLGEGAIGDAGHQGQSKTM CCEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SMPDDMEVCGCNGVCKGTIVKAVQEHGLFSVDEVKKHTKAASSCGSCTGLVEQILINTVG CCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC GAADVKPKSEKAICGCSDLNHGQVRKAIREHHLISIPAAMAFMEWRTPNGCATCRPALNY CCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCEEECHHHHHHHHCCCCCCCCCCCCCCCE YLISTWPGEAKDDPQSRFINERAHANIQKDGTYSVVPRMWGGVTNAAELRRIADVADKYQ EEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCHHHHHHHHHHHHHHC VPMVKVTGGQRIDLLGIRKEDLPGVWKDLDMPSGHAYGKSIRTVKTCVGSEFCRFGTQNS CCEEEECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC TQMGIDLEHALFNMWSPHKVKLAVSGCPRNCAESGIKDVGIIGVDSGWELYIGGNGGIKT CEECCCHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCEEEECCCCCCCC EAGEFFVKVKSAEEVMEYSLAFLQLYREEAFYLERTVHYLQRVGMDHIKQAVLNDAERRK CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHH ALHQRLLFSLSFEQDPWQEQLSKPQLKKEFDRIAVKQLENA HHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKLKLVMIGNGMAGVRTLEELLKLTDELYDITVFGAEPHPNYNRILLSPVLAGEQQFEE CCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEEEHHHCCHHHHHH IVLNDLDWYAENGIRLMLKRKVVKIDRARRRVIADDGSEAEYDRLLIATGSNPFILPIPG HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCC NDLQGVIGYRDIADTQVMMETAKTHKHAVVIGGGLLGLEAANGLKLRGMDVTVVHIGDWL CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCEEEECCEEEEEEHHHHH MERQLDKTAGTLLQSALESRGLKFLLPKQTAELIGNGEGRVKAVRFADGEVIPADLVVMA HHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEE AGIRPNSELAEQAGLPCNRGILVNDTLQTYDPRIYAVGECANHRGTAYGLVAPLFEQAKV CCCCCCHHHHHHCCCCCCCCEEEECCHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH CANHLAMLGFSRYLGSVTSTKLKVTGIDLFSAGDFIGGEGTETITLSDPIGGVYKKLVIK HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHEE DDVLVGACLYGDTADGGWYFRQVREGQNVAQIRDHLMFGAAGLGEGAIGDAGHQGQSKTM CCEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SMPDDMEVCGCNGVCKGTIVKAVQEHGLFSVDEVKKHTKAASSCGSCTGLVEQILINTVG CCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC GAADVKPKSEKAICGCSDLNHGQVRKAIREHHLISIPAAMAFMEWRTPNGCATCRPALNY CCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCEEECHHHHHHHHCCCCCCCCCCCCCCCE YLISTWPGEAKDDPQSRFINERAHANIQKDGTYSVVPRMWGGVTNAAELRRIADVADKYQ EEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCEEECHHHHCCCCCHHHHHHHHHHHHHHC VPMVKVTGGQRIDLLGIRKEDLPGVWKDLDMPSGHAYGKSIRTVKTCVGSEFCRFGTQNS CCEEEECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC TQMGIDLEHALFNMWSPHKVKLAVSGCPRNCAESGIKDVGIIGVDSGWELYIGGNGGIKT CEECCCHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCEEEECCCCCCCC EAGEFFVKVKSAEEVMEYSLAFLQLYREEAFYLERTVHYLQRVGMDHIKQAVLNDAERRK CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHH ALHQRLLFSLSFEQDPWQEQLSKPQLKKEFDRIAVKQLENA HHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7868621; 8969502; 9384377 [H]