| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is ybjJ [C]
Identifier: 146282578
GI number: 146282578
Start: 2434201
End: 2435241
Strand: Direct
Name: ybjJ [C]
Synonym: PST_2230
Alternate gene names: 146282578
Gene position: 2434201-2435241 (Clockwise)
Preceding gene: 146282575
Following gene: 146282579
Centisome position: 53.29
GC content: 66.95
Gene sequence:
>1041_bases GTGCCTTACGTCCGTGAACGCATCGAGATGACCGATGCGGTGTTCGGTCTGTTGCTGCTGTGCATTGGGATCGGCTCGCT GACCTGGATGCCCATTTCCGGCGTCCTGGTGGCCCGCTGGGGCATTCGCCCGGTGCAGCTGTGCAGTGTCGCGCTGCTGG CCCTGGCGCTGGCCGGCATGGCGCTGACCGATTCGATCGGGTGGCTGGGCCTGGCGCTGTTCTGTTTCGGCGGCAGCCTG GGCGTCATCGACGTCATCATGAACATTCAGGCGGTGCTGGTGGAAACCGCTGTCGGCCGCCGGCTGATGTCCAATTTTCA CGGCATGTACAGCCTCGGCGCCATCAGTGGTGCGCTGGTGCTGACCGGCCTGCTGAGCCTGGGTCTGGCACCGGAGGTCG GTAGCTTCATGATGATCGGCGTGATCGTGGCGGCGAACCTGGCCCTTGCGCGCGGCTATCTGCCGAATCGCGCGCCCGGT GGTGGCCTCGCCTTCGTCCGCCCGACCGGGCTGGTGATGCTGGTCGGCCTGATGTGCTTCGTCGTCTACCTCGCCGAAGG CGCCGTGCTGGACTGGAGCGCGCTCTATCTGACCGGCGAGAAAGGCCTGGAAGTCGCCAGAGGCGGGCTCGGCTATGCGG CCTTCGCGCTGATGGTCACCATCGCCCGTTTCGCTGGCGCTCCGCTGGTGAACAGCCTAGGCACGGCGCGGGTCATCGCC TTCGGCGGCATGCTGGCGGCATTCGGCATCGGTCTGAGCCTGACCGCCGAGCACTGGGCGCTGGCATTGGTCGGCTATGG GCTGTGCGGCCTGGGGTGCGCCAACGTTTCGCCCGTGCTGATTTCCTCGTTGAGCCGGCAGGACGGCATGCCGGTACAGC TGGCCGTCACCGTCGCCACTACCATTGGCTTTGCCGGCGTGCTCGCCGGCCCGGCGATGATGGGCATGGTCGCCCATTTC AGCTCGCTGGGCATGGCCTTCGCACTGCTCGCCGTCCTGCTGCTCGGTATCGTGCCGTTCTGCCGTCGCTTCGCGGCGTG A
Upstream 100 bases:
>100_bases GGTTCGTAACACCGTTCAGATTGATGCCCCCATCGTGCGCAACGCGACCCGTTGCGGTTTCTTCATGGCCGGCTTCGGCC TTTCCGTCTGGGCGCCGCTG
Downstream 100 bases:
>100_bases GCCCGGCTAGAATGCGCGCCCTATGCGCATCCCCGACTTCCAGCAACGCCTCGCCGACATCGGCGCCAAGCCCCGTCATA TCGGACGGATGACCCGCGCC
Product: transporter, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MPYVRERIEMTDAVFGLLLLCIGIGSLTWMPISGVLVARWGIRPVQLCSVALLALALAGMALTDSIGWLGLALFCFGGSL GVIDVIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALVLTGLLSLGLAPEVGSFMMIGVIVAANLALARGYLPNRAPG GGLAFVRPTGLVMLVGLMCFVVYLAEGAVLDWSALYLTGEKGLEVARGGLGYAAFALMVTIARFAGAPLVNSLGTARVIA FGGMLAAFGIGLSLTAEHWALALVGYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVATTIGFAGVLAGPAMMGMVAHF SSLGMAFALLAVLLLGIVPFCRRFAA
Sequences:
>Translated_346_residues MPYVRERIEMTDAVFGLLLLCIGIGSLTWMPISGVLVARWGIRPVQLCSVALLALALAGMALTDSIGWLGLALFCFGGSL GVIDVIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALVLTGLLSLGLAPEVGSFMMIGVIVAANLALARGYLPNRAPG GGLAFVRPTGLVMLVGLMCFVVYLAEGAVLDWSALYLTGEKGLEVARGGLGYAAFALMVTIARFAGAPLVNSLGTARVIA FGGMLAAFGIGLSLTAEHWALALVGYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVATTIGFAGVLAGPAMMGMVAHF SSLGMAFALLAVLLLGIVPFCRRFAA >Mature_345_residues PYVRERIEMTDAVFGLLLLCIGIGSLTWMPISGVLVARWGIRPVQLCSVALLALALAGMALTDSIGWLGLALFCFGGSLG VIDVIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALVLTGLLSLGLAPEVGSFMMIGVIVAANLALARGYLPNRAPGG GLAFVRPTGLVMLVGLMCFVVYLAEGAVLDWSALYLTGEKGLEVARGGLGYAAFALMVTIARFAGAPLVNSLGTARVIAF GGMLAAFGIGLSLTAEHWALALVGYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVATTIGFAGVLAGPAMMGMVAHFS SLGMAFALLAVLLLGIVPFCRRFAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787068, Length=350, Percent_Identity=30.2857142857143, Blast_Score=105, Evalue=6e-24,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 35572; Mature: 35441
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYVRERIEMTDAVFGLLLLCIGIGSLTWMPISGVLVARWGIRPVQLCSVALLALALAGM CCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHH ALTDSIGWLGLALFCFGGSLGVIDVIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LTGLLSLGLAPEVGSFMMIGVIVAANLALARGYLPNRAPGGGLAFVRPTGLVMLVGLMCF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHH VVYLAEGAVLDWSALYLTGEKGLEVARGGLGYAAFALMVTIARFAGAPLVNSLGTARVIA HHHHHCCCEEECCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH FGGMLAAFGIGLSLTAEHWALALVGYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVAT HHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHH TIGFAGVLAGPAMMGMVAHFSSLGMAFALLAVLLLGIVPFCRRFAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PYVRERIEMTDAVFGLLLLCIGIGSLTWMPISGVLVARWGIRPVQLCSVALLALALAGM CHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHH ALTDSIGWLGLALFCFGGSLGVIDVIMNIQAVLVETAVGRRLMSNFHGMYSLGAISGALV HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LTGLLSLGLAPEVGSFMMIGVIVAANLALARGYLPNRAPGGGLAFVRPTGLVMLVGLMCF HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHH VVYLAEGAVLDWSALYLTGEKGLEVARGGLGYAAFALMVTIARFAGAPLVNSLGTARVIA HHHHHCCCEEECCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHHHH FGGMLAAFGIGLSLTAEHWALALVGYGLCGLGCANVSPVLISSLSRQDGMPVQLAVTVAT HHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEHHHHHH TIGFAGVLAGPAMMGMVAHFSSLGMAFALLAVLLLGIVPFCRRFAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]