| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
Click here to switch to the map view.
The map label for this gene is rof [C]
Identifier: 145301128
GI number: 145301128
Start: 4597630
End: 4597884
Strand: Direct
Name: rof [C]
Synonym: ASA_4297
Alternate gene names: 145301128
Gene position: 4597630-4597884 (Clockwise)
Preceding gene: 145301127
Following gene: 145301130
Centisome position: 97.77
GC content: 60.0
Gene sequence:
>255_bases ATGCCGGATTACCAACCCATCAGCTGCGATCTCTACGACTGGCTTGAAATTGCCGCCAGCTGGCAATTACCGGTGACCCT CGCCAGTCGCGATGGCCACCAGTGGGATGACAAGATCCGCACCATCGAAGCCAGCGAGGGTGTCGAGTATCTGCTGCTGC ACAGTGGCGAGCGACTCAGCCTGGGGGATCTGGCGACTCTGCGCCTGAGATGGCAAGGGGAAGAGAAGCTGATCCGCTTC GCCCCAACCAACTGA
Upstream 100 bases:
>100_bases CAGCGAATTGCGTCTCGAAGTGGAACGCCAGCAGAAGATGGGCTGGCCTACTCGCTTGCTGGAAGCCTGACACAGAAACT TGCTCGTTTGGGAGCCGATC
Downstream 100 bases:
>100_bases ATCCGGTACGAAAAAAGAGGGCCAACCTTGGGTTGGCCCTCTTTTTTTTCATCAGCGGCTCACACTGGCGGTTAACCCGC CGCCAGCGCAGCCATCACGT
Product: modulator of Rho-dependent transcription termination
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 84; Mature: 83
Protein sequence:
>84_residues MPDYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLGDLATLRLRWQGEEKLIRF APTN
Sequences:
>Translated_84_residues MPDYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLGDLATLRLRWQGEEKLIRF APTN >Mature_83_residues PDYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLSLGDLATLRLRWQGEEKLIRFA PTN
Specific function: Suppresses Temperature-Sensitive Mutations In Essential Genes By Modulating Rho-Dependent Transcription Termination. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9700; Mature: 9569
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLS CCCCCCCEECHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCC LGDLATLRLRWQGEEKLIRFAPTN CCCEEEEEEEECCCCCEEEEECCC >Mature Secondary Structure PDYQPISCDLYDWLEIAASWQLPVTLASRDGHQWDDKIRTIEASEGVEYLLLHSGERLS CCCCCCEECHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCC LGDLATLRLRWQGEEKLIRFAPTN CCCEEEEEEEECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA