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The map label for this gene is yhjC [C]

Identifier: 145301009

GI number: 145301009

Start: 4456955

End: 4457842

Strand: Direct

Name: yhjC [C]

Synonym: ASA_4163

Alternate gene names: 145301009

Gene position: 4456955-4457842 (Clockwise)

Preceding gene: 145301007

Following gene: 145301011

Centisome position: 94.78

GC content: 62.5

Gene sequence:

>888_bases
GTGGACCGTCTGACCGCCATCGAGATCTTCGTCGAGGTCGCCCGCGCGGGCAGCTTCAGTGCCGTCGCGGAGAGATTCGA
GATGACGCCGGCCATGATAGGCAAGTACATCAAGTGGCTGGAGGCCAGGGTCGGATCCCGTCTGCTCAATCGCAACACCC
GCCGCCAGAGCCTGACCGAGGCGGGCAGAGAGTACCTCGGCGGTTGCCAGAACCTGTTGCAGCACTATCGGGAACTGGAG
CAGAACACCCGGGCCCACACAGGTCAGGCTGCGGGCAAGATCCGCATCAATGCCCCCATCACCTTCGGCAGCTATCGGCT
GACCCCCTTGCTGTGCCGCTTCATGGCGCAGTATCCACAGATCCGCATCGAGCTGGATCTCTGCGATCGGCTGGTCGATG
TGATTGGCGACGGTTTTGACCTCATCTTTCGGGTCGGCACCCCCAAGGATGCCGCCTATATCGCTCGCCCACTGACCAGC
TCAACCTCTGTGTTCTGCGCCTCGCCGCGCTATTTGCAACGCCACGGCACCCCCATGGCACTGGCTGACCTGGCCCGCCA
TCAGTGCCTGGGTTTCACCCCCTGGCTGACACAATCGAGCCTGGCCGAGGATTTTCCCCTCGAACACCTGCACCTGTGGG
ACAGCCAGTTCATCAGCAACCATGGCAGCGCCCTCAAGGTAGCCGCGATCAACCATGCGGGCATAGTGCTGCAACCCAGG
GCCCTGCTGACTCCGGAGCTGGAAAGCGGCGTCCTGCTGGAAATACTGCCGGATGCTCTGCCCGCCCCTCGCCCTGTCAA
TATGCTCTATCCCGCCCGCGAACCCATGCCGCTTCGGCTTCGACTGCTGATCGACTATCTCAGCGAGCAGCGCCATGAAC
TGGATTAG

Upstream 100 bases:

>100_bases
ACAGGGCATTCCATGGTCGGTGTAGTGCCGCCCAGTATATTGACAGCCGCTTCGCCAGCCAGACATAGTGGCGCTCGGCT
TTATAAACCAGGAGTTTAGA

Downstream 100 bases:

>100_bases
CCCGCTCAAGAGGGAGACCAGGCCGGCTACTCCCCGCGCTGCTTCACCTTGCGCAGATAGACATAACCCTCACCCGGGCT
GCCCCAGCGCTGATGGGCCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTEAGREYLGGCQNLLQHYRELE
QNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQIRIELDLCDRLVDVIGDGFDLIFRVGTPKDAAYIARPLTS
STSVFCASPRYLQRHGTPMALADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWDSQFISNHGSALKVAAINHAGIVLQPR
ALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQRHELD

Sequences:

>Translated_295_residues
MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTEAGREYLGGCQNLLQHYRELE
QNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQIRIELDLCDRLVDVIGDGFDLIFRVGTPKDAAYIARPLTS
STSVFCASPRYLQRHGTPMALADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWDSQFISNHGSALKVAAINHAGIVLQPR
ALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQRHELD
>Mature_295_residues
MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTEAGREYLGGCQNLLQHYRELE
QNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQIRIELDLCDRLVDVIGDGFDLIFRVGTPKDAAYIARPLTS
STSVFCASPRYLQRHGTPMALADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWDSQFISNHGSALKVAAINHAGIVLQPR
ALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQRHELD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=32.3024054982818, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1786401, Length=283, Percent_Identity=32.5088339222615, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=29.2929292929293, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=29.96632996633, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=29.0540540540541, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=28.0405405405405, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=26.3157894736842, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788481, Length=276, Percent_Identity=26.0869565217391, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790011, Length=307, Percent_Identity=24.1042345276873, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=25.9842519685039, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=25.6809338521401, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=171, Percent_Identity=26.3157894736842, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33242; Mature: 33242

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AGREYLGGCQNLLQHYRELEQNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHCCC
IRIELDLCDRLVDVIGDGFDLIFRVGTPKDAAYIARPLTSSTSVFCASPRYLQRHGTPMA
EEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCEEECCCHHHHHCCCCHH
LADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWDSQFISNHGSALKVAAINHAGIVLQPR
HHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCH
ALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQRHELD
HHCCCCCCCCEEHEECHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDRLTAIEIFVEVARAGSFSAVAERFEMTPAMIGKYIKWLEARVGSRLLNRNTRRQSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AGREYLGGCQNLLQHYRELEQNTRAHTGQAAGKIRINAPITFGSYRLTPLLCRFMAQYPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEECCCHHHHHHHHHHHHCCC
IRIELDLCDRLVDVIGDGFDLIFRVGTPKDAAYIARPLTSSTSVFCASPRYLQRHGTPMA
EEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCEEECCCHHHHHCCCCHH
LADLARHQCLGFTPWLTQSSLAEDFPLEHLHLWDSQFISNHGSALKVAAINHAGIVLQPR
HHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCH
ALLTPELESGVLLEILPDALPAPRPVNMLYPAREPMPLRLRLLIDYLSEQRHELD
HHCCCCCCCCEEHEECHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]