| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is 145300871
Identifier: 145300871
GI number: 145300871
Start: 4311405
End: 4312037
Strand: Direct
Name: 145300871
Synonym: ASA_4016
Alternate gene names: NA
Gene position: 4311405-4312037 (Clockwise)
Preceding gene: 145300870
Following gene: 145300873
Centisome position: 91.69
GC content: 56.56
Gene sequence:
>633_bases ATGAATACCTTCAATAAAGCGCTCGTTTTCTCCCTGCTCGGTCTGGGTATCAGCACTGCCGCTTGTGCAGAAGGCTGGTA TGCAGGGCTGGATCTGATCACCTCCAAGGCAGATCTGGATGGCATGGCGCAGCAAGCGTATGACGCCAAATTGATGGACG ATCGTCTCGATGGCGGTAGTCTGATCGTGGGTTACAGCTTCAAACCCTGGCTGGCCATCGAAGGTGGCCTGCATGCCCAG CAGATGAGCCAGCTGATGTGGATCACCAGCTCGGTGGCCACCGGCTTTGTTGATACCACCATAGACACCCGCAGCATCAG CTTGGCCGCCAAGTTCAGTCAGCCGCTGGCATATGGCTTCTCTGCCTACGCCAAACCCGGCCTCGCCTATACCCGCACCG AAGTCGAAGTGATTGGCAACGGCAGCATACCCGCGCTGGGAGTGAACGAGCAGGGTCGTATCGACGAAGCGAAAGGCCGG GTTCACCCCAACCTGGAAGTCGGTTTCGACTATGCCTTCAACAGCAGCATCTCTGCCGGTATCGGCTATGAGCGTCAATT CAGCGCCCTGACACTGGGTGACGATCACCACTCAATGGATACGTTCAAGCTGGGTCTTCGTTACCACTTCTAA
Upstream 100 bases:
>100_bases GCGGCCCCCCAGCAATGGCGGATAAAGGGAATATAAATAAACTTCATGGATAGAGGTATTTCAACCACGCAGAGTTCACG CATACAGGAATAATTTATCC
Downstream 100 bases:
>100_bases GTTATCTTGTTCCTCAGGGGGAGATCTCCCCCTGCTTTTCCCGCCAATGGATCTTCTCTCCCGGTTTCCATCCGCCAGAA TATAAGTCAAATCCGCCATT
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MNTFNKALVFSLLGLGISTAACAEGWYAGLDLITSKADLDGMAQQAYDAKLMDDRLDGGSLIVGYSFKPWLAIEGGLHAQ QMSQLMWITSSVATGFVDTTIDTRSISLAAKFSQPLAYGFSAYAKPGLAYTRTEVEVIGNGSIPALGVNEQGRIDEAKGR VHPNLEVGFDYAFNSSISAGIGYERQFSALTLGDDHHSMDTFKLGLRYHF
Sequences:
>Translated_210_residues MNTFNKALVFSLLGLGISTAACAEGWYAGLDLITSKADLDGMAQQAYDAKLMDDRLDGGSLIVGYSFKPWLAIEGGLHAQ QMSQLMWITSSVATGFVDTTIDTRSISLAAKFSQPLAYGFSAYAKPGLAYTRTEVEVIGNGSIPALGVNEQGRIDEAKGR VHPNLEVGFDYAFNSSISAGIGYERQFSALTLGDDHHSMDTFKLGLRYHF >Mature_210_residues MNTFNKALVFSLLGLGISTAACAEGWYAGLDLITSKADLDGMAQQAYDAKLMDDRLDGGSLIVGYSFKPWLAIEGGLHAQ QMSQLMWITSSVATGFVDTTIDTRSISLAAKFSQPLAYGFSAYAKPGLAYTRTEVEVIGNGSIPALGVNEQGRIDEAKGR VHPNLEVGFDYAFNSSISAGIGYERQFSALTLGDDHHSMDTFKLGLRYHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22666; Mature: 22666
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTFNKALVFSLLGLGISTAACAEGWYAGLDLITSKADLDGMAQQAYDAKLMDDRLDGGS CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCC LIVGYSFKPWLAIEGGLHAQQMSQLMWITSSVATGFVDTTIDTRSISLAAKFSQPLAYGF EEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEECEECCCEEEEEEHHCCCHHHCH SAYAKPGLAYTRTEVEVIGNGSIPALGVNEQGRIDEAKGRVHPNLEVGFDYAFNSSISAG HHHCCCCCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC IGYERQFSALTLGDDHHSMDTFKLGLRYHF CCCCCCEEEEEECCCCCCCCEEEEEEEECC >Mature Secondary Structure MNTFNKALVFSLLGLGISTAACAEGWYAGLDLITSKADLDGMAQQAYDAKLMDDRLDGGS CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCC LIVGYSFKPWLAIEGGLHAQQMSQLMWITSSVATGFVDTTIDTRSISLAAKFSQPLAYGF EEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEECEECCCEEEEEEHHCCCHHHCH SAYAKPGLAYTRTEVEVIGNGSIPALGVNEQGRIDEAKGRVHPNLEVGFDYAFNSSISAG HHHCCCCCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC IGYERQFSALTLGDDHHSMDTFKLGLRYHF CCCCCCEEEEEECCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA