Click here to switch to the map view.

The map label for this gene is exoD [H]

Identifier: 145300751

GI number: 145300751

Start: 4176644

End: 4177282

Strand: Direct

Name: exoD [H]

Synonym: ASA_3890

Alternate gene names: 145300751

Gene position: 4176644-4177282 (Clockwise)

Preceding gene: 145300749

Following gene: 145300753

Centisome position: 88.82

GC content: 63.54

Gene sequence:

>639_bases
ATGGTTGCCGCGCAACTCAAGGACCCACAACACAAGCTCTCCGACACACTGCGGGCAACCGCCCACGCCATAGAGGAGAG
CCATATCAGCCTGCGCCAGATGCTGGCCCTGGTGGGTGAGCAGGGCATGCTGCTGTTTTGCGTACTGCTCACTGTGCCCT
TCCTGCTGCCTGTTTCCATCCCTGGCGTCAGCACCCCGTTTGGCCTGCTGATCCTGTTTATCGGTATCGGCATCACCCTC
AACCGTGTGCCCTGGCTGCCCGCCATCCTGATGGAACGCCGCTTCGCCGCCGATCAGCTAAAGCCGACCCTGCACAAGGG
CGCTGACTTGCTGGCCCGCATCGATCGCTTCATTCGCCCACGCTTCTTGCTGCTGACCGGCAGCAGTGCCATCAACCGCT
GCAACGGCCTCTTGCTCATGCTGGCCGCCCTGTTGCTGATGCTGCCGCTGGGGGCCATCCCCTTCACCAACGCCATGCCC
GCCTGGGCCATTCTGCTGCTGGCCATCGGCATGCTGCAGCGAGACGGCCTGTTCGTCGCCAGCGGTTACCTGCTGGTCAG
TGCCACCCTGGTCTGGTTCAGCGCCCTGGCCATAGGGTTGTTGATGGCGGGGCAGAGCGTCTCGACCCTGCTGGGTTGA

Upstream 100 bases:

>100_bases
GCCGCCGCCGTTATTCATCGGGGATTAACCCCTGCCACGTATGCTGGCGTGCAACCGGGTCATGCTGACCCGATTCCACT
CATCAGAAGGAAACTCGGGA

Downstream 100 bases:

>100_bases
CCCTGACACGCAGACGAAAAAGGGGCGACCAGGTGGTCGCCCCTTTTGTTTCATGCGGCATGCAGGCCGTCAGATCAGGT
CATAGATCAGCGCGGAGATG

Product: exopolysaccharide synthesis protein ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MVAAQLKDPQHKLSDTLRATAHAIEESHISLRQMLALVGEQGMLLFCVLLTVPFLLPVSIPGVSTPFGLLILFIGIGITL
NRVPWLPAILMERRFAADQLKPTLHKGADLLARIDRFIRPRFLLLTGSSAINRCNGLLLMLAALLLMLPLGAIPFTNAMP
AWAILLLAIGMLQRDGLFVASGYLLVSATLVWFSALAIGLLMAGQSVSTLLG

Sequences:

>Translated_212_residues
MVAAQLKDPQHKLSDTLRATAHAIEESHISLRQMLALVGEQGMLLFCVLLTVPFLLPVSIPGVSTPFGLLILFIGIGITL
NRVPWLPAILMERRFAADQLKPTLHKGADLLARIDRFIRPRFLLLTGSSAINRCNGLLLMLAALLLMLPLGAIPFTNAMP
AWAILLLAIGMLQRDGLFVASGYLLVSATLVWFSALAIGLLMAGQSVSTLLG
>Mature_212_residues
MVAAQLKDPQHKLSDTLRATAHAIEESHISLRQMLALVGEQGMLLFCVLLTVPFLLPVSIPGVSTPFGLLILFIGIGITL
NRVPWLPAILMERRFAADQLKPTLHKGADLLARIDRFIRPRFLLLTGSSAINRCNGLLLMLAALLLMLPLGAIPFTNAMP
AWAILLLAIGMLQRDGLFVASGYLLVSATLVWFSALAIGLLMAGQSVSTLLG

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22885; Mature: 22885

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAAQLKDPQHKLSDTLRATAHAIEESHISLRQMLALVGEQGMLLFCVLLTVPFLLPVSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PGVSTPFGLLILFIGIGITLNRVPWLPAILMERRFAADQLKPTLHKGADLLARIDRFIRP
CCCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RFLLLTGSSAINRCNGLLLMLAALLLMLPLGAIPFTNAMPAWAILLLAIGMLQRDGLFVA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
SGYLLVSATLVWFSALAIGLLMAGQSVSTLLG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MVAAQLKDPQHKLSDTLRATAHAIEESHISLRQMLALVGEQGMLLFCVLLTVPFLLPVSI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PGVSTPFGLLILFIGIGITLNRVPWLPAILMERRFAADQLKPTLHKGADLLARIDRFIRP
CCCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RFLLLTGSSAINRCNGLLLMLAALLLMLPLGAIPFTNAMPAWAILLLAIGMLQRDGLFVA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
SGYLLVSATLVWFSALAIGLLMAGQSVSTLLG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]