| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is alaS [H]
Identifier: 145300678
GI number: 145300678
Start: 4102712
End: 4105336
Strand: Direct
Name: alaS [H]
Synonym: ASA_3811
Alternate gene names: 145300678
Gene position: 4102712-4105336 (Clockwise)
Preceding gene: 145300677
Following gene: 145300679
Centisome position: 87.25
GC content: 59.58
Gene sequence:
>2625_bases ATGTATATGTCCACGTCAGAGATACGCGCTGCGTTTCTCGAGTATTTCCGCTCCCAGGGGCACCAGGTTGTCTCTTCCAG CTCGCTGGTACCGCATAACGACCCGACCCTGTTGTTTACCAACGCAGGCATGAACCAGTTCAAGGATGTGTTCCTTGGTG CAGACAAGCGTGCCTACAATCGGGCAACCACTTCCCAGCGTTGTGTCCGTGCCGGTGGTAAACACAATGACCTGGAAAAC GTCGGCTATACCGCTCGTCACCACACCTTCTTCGAAATGCTGGGCAACTTCAGCTTCGGTGACTACTTCAAGCAGGACGC CATCCGTTTTGCCTGGGAATTCCTGACCGGGACCCTAAAGCTGCCCAAAGAGCGCTTGCTGGTAACCGTGTATGAAACGG ACGATGAAGCCTTCAATATCTGGGCAAATGAAGTGGGTGTGCCGGTCGAGCGCATAGTGCGCATCGGTGACAACAAGGGG GCAGCCTTTGCTTCCGATAACTTCTGGCAGATGAGTGATACAGGTCCGTGTGGCCCCTGCACCGAGATCTTCTATGACCA CGGCGATCACATCTGGGGTGGCCCTCCCGGCTCACCGGAAGAAGATGGCGACCGTTTCATCGAGATCTGGAACGTGGTGT TCATGCAGTTCAACCGTCAGGCTGACGGCACCATGGAACCGCTGCCCCGTCCGTCCGTGGATACCGGCATGGGTCTGGAG CGTATCTCCGCCATCATGCAGGGCGTGCACTCCAACTACGAGATCGACATCTTCCAGGCGCTGATCAAGAAAGCGGCCGA GATCGTCGGCACTACCGATCTTAGCAATCAGTCCCTGCGCGTCATCGCCGACCACATCCGCTCCTGCGCCTTCCTGATCG CTGACGGCGTCATGCCGTCCAACGAAGGTCGTGGCTATGTGCTGCGCCGCATTATCCGTCGCGCCGTGCGTCACGGTCGC AAGCTGGGTGCCACCGACGTCTTCTTCTACAAGCTGGCTGCCGAACTGGCGGTGCAGATGAAAGACGTGGGCGCCGAGCT GATCGCCCAGCTGCCGCTGGTCAAGCGCGTGTTGCGCATTGAGGAAGAGCAGTTCGTCCGTACGCTGGATCGCGGCCTGC TGCTGCTGGAAGACGTGCTGGCCAATCTGGGTGATGCCAAGGTCATACCTGGCGAGGTGGTGTTCAAGCTGTATGACACC TACGGCTTCCCGGCTGACCTGACCGCCGACGTGGTGCGCGAGCGCGAGATCGGCATCGACGAAGAGGGCTTCAATGCCGA GATGGAGAAGCAGCGTGCCCGCGCGAAAGAGGCCTCCAGCTTCGGTGTGAACTACAACGAGGTGCTCAAGCTCGACTTCG AGACCCCGTTTACCGGTTACAAGCAGCTGAGCCAGAAAACCAGCGTCGTCGGCATCTACAAGGATGGCGTCGAAGTGAAT GGCCTCATCGCCGGTGAAGAAGCCGTAGTGGTACTGGCCGAGACTCCCTTCTACGCCGAGTCAGGTGGTCAGGTGGGTGA TTGCGGCGTGCTCAAGGTAGATGACGGCATCTTCGCCGTGACCGATACCCAGAAAGCGGGCAAGGCCATCATCCACAAGG GTTATCTGGAGCTGGGTACCCTGGAGAAAGGCGCCCTGGTCGAAGCCGTTGTCGATGGCGAGCGTCGTCAGGCTGTGGCC CTGAACCACTCTGTGACTCACCTGCTGCACGCAGCCCTGCGCCAGGCGCTGGGGGATCACGTGACTCAGAAAGGGTCTCT GGTGGGAGCCGAGCGCATGCGCTTCGATTTCTCCCACTTCGAAGGACTGACCATGGCGACCATTCGTCGGGTCGAGGAGC TGGTCAATGCCCAGATCCGTGCCAACCACGACATCGCTACCCAGGTAATGGATCTGGAAGCGGCCAAGTCGGCCGGTGCC ATGGCGCTGTTTGGTGAAAAATATGAAGACGACGTGCGCGTAGTGCGCATGGGCGACTACTCCACCGAGCTGTGCGGCGG TACTCACGCCAAGCGTACCGGTGACATCGGCTTCTTCAAGATCATCGCCGAGAGCGGCATTGCCGCCGGTGTGCGTCGCA TCGAAGCCGTGACCGGCAAGGGCGCCATCGATTTCATGCACCAGATGGGTGAGCAGATCGAAGAGGCAGCGGCTCTGGTG AAGGGGGATCAGTTCTCCATCGCCGATAAAGTGCGCCAGATACTGGACAAGTCCAAGATGATGGAGCGCGAGCTGGAGCA GCTCAAGGCCAAGCTGGCCGCCCAGGCTGGTAGCGACCTGTTGAGCCAGGTGATCGAGATCAACGGTCAGAAGGTGCTGA TAGCGGCGCTGGAAGGGGCGGATCCCAAGTCACTGCGTGGCATGCTGGATGAGCTGAAAAACCGGATGAAGTCCGGTGTC GTGCTGTTGGCAACCAGCAGCGATGACAAGGTCAACCTGATCGCCGGTGTGACCAGTGATTTGACCGGCAAGGTCAAGGC CGGTGAGCTGGTCAATCTGGTGGCCCAGCAGGTGGGTGGCAAGGGTGGTGGTCGTCCTGACATGGCTCAGGCGGGTGGCA CTCAGCCAGAAGCTGTGCCTGCGGCACTGCAATCCGTTCACTCCTGGCTGGAAGAGCGCCTGTAA
Upstream 100 bases:
>100_bases ACTTTTTCACCCGTGACCGGCCGGCACGTTTTACTTTACCCCGCAGAAAACTTACATTAATGCGGTTAAAAGTCCGTATT CGAATCAAGCAGGATTTTCC
Downstream 100 bases:
>100_bases AAGGGCGAGGTGATCTGTGGCACTCTATGTACAGAAGTACGGCGGCACCTCGGTCGGCACGCTGGAGCGGATCGAGGCGG TGGCTGAGCGGGTTCAACTG
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MYMSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRATTSQRCVRAGGKHNDLEN VGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLPKERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKG AAFASDNFWQMSDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLE RISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLIADGVMPSNEGRGYVLRRIIRRAVRHGR KLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRIEEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDT YGFPADLTADVVREREIGIDEEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFETPFTGYKQLSQKTSVVGIYKDGVEVN GLIAGEEAVVVLAETPFYAESGGQVGDCGVLKVDDGIFAVTDTQKAGKAIIHKGYLELGTLEKGALVEAVVDGERRQAVA LNHSVTHLLHAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQVMDLEAAKSAGA MALFGEKYEDDVRVVRMGDYSTELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALV KGDQFSIADKVRQILDKSKMMERELEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGV VLLATSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQVGGKGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL
Sequences:
>Translated_874_residues MYMSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRATTSQRCVRAGGKHNDLEN VGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLPKERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKG AAFASDNFWQMSDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLE RISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLIADGVMPSNEGRGYVLRRIIRRAVRHGR KLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRIEEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDT YGFPADLTADVVREREIGIDEEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFETPFTGYKQLSQKTSVVGIYKDGVEVN GLIAGEEAVVVLAETPFYAESGGQVGDCGVLKVDDGIFAVTDTQKAGKAIIHKGYLELGTLEKGALVEAVVDGERRQAVA LNHSVTHLLHAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQVMDLEAAKSAGA MALFGEKYEDDVRVVRMGDYSTELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALV KGDQFSIADKVRQILDKSKMMERELEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGV VLLATSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQVGGKGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL >Mature_874_residues MYMSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRATTSQRCVRAGGKHNDLEN VGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLPKERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKG AAFASDNFWQMSDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLE RISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLIADGVMPSNEGRGYVLRRIIRRAVRHGR KLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRIEEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDT YGFPADLTADVVREREIGIDEEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFETPFTGYKQLSQKTSVVGIYKDGVEVN GLIAGEEAVVVLAETPFYAESGGQVGDCGVLKVDDGIFAVTDTQKAGKAIIHKGYLELGTLEKGALVEAVVDGERRQAVA LNHSVTHLLHAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQVMDLEAAKSAGA MALFGEKYEDDVRVVRMGDYSTELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALV KGDQFSIADKVRQILDKSKMMERELEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGV VLLATSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQVGGKGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=978, Percent_Identity=36.40081799591, Blast_Score=533, Evalue=1e-151, Organism=Homo sapiens, GI38569417, Length=906, Percent_Identity=33.3333333333333, Blast_Score=425, Evalue=1e-118, Organism=Escherichia coli, GI1789048, Length=876, Percent_Identity=66.7808219178082, Blast_Score=1202, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=36.7451381780962, Blast_Score=542, Evalue=1e-154, Organism=Caenorhabditis elegans, GI17536681, Length=742, Percent_Identity=34.366576819407, Blast_Score=391, Evalue=1e-109, Organism=Saccharomyces cerevisiae, GI6324911, Length=971, Percent_Identity=37.2811534500515, Blast_Score=572, Evalue=1e-163, Organism=Drosophila melanogaster, GI24582809, Length=987, Percent_Identity=35.8662613981763, Blast_Score=527, Evalue=1e-149, Organism=Drosophila melanogaster, GI45552267, Length=987, Percent_Identity=35.8662613981763, Blast_Score=527, Evalue=1e-149, Organism=Drosophila melanogaster, GI24658214, Length=858, Percent_Identity=29.8368298368298, Blast_Score=334, Evalue=1e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 95780; Mature: 95780
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYMSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYN CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHH RATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLK HHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC LPKERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPC CCCCCEEEEEEECCCCCEEEEHHHCCCCHHHHHEECCCCCCEECCCCCEECCCCCCCCCH TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLE HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH RISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLIADGVMPS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRI CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREIGID HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC EEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFETPFTGYKQLSQKTSVVGIYKDGVEVN CCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHCCCCEEEEEECCCEEE GLIAGEEAVVVLAETPFYAESGGQVGDCGVLKVDDGIFAVTDTQKAGKAIIHKGYLELGT EEEECCCEEEEEECCCCEECCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHCCHHCCC LEKGALVEAVVDGERRQAVALNHSVTHLLHAALRQALGDHVTQKGSLVGAERMRFDFSHF CCCCHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EGLTMATIRRVEELVNAQIRANHDIATQVMDLEAAKSAGAMALFGEKYEDDVRVVRMGDY CCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCC STELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALV CHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KGDQFSIADKVRQILDKSKMMERELEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCC DPKSLRGMLDELKNRMKSGVVLLATSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQVGG CHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC KGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYMSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYN CCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCHHHHH RATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLK HHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC LPKERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPC CCCCCEEEEEEECCCCCEEEEHHHCCCCHHHHHEECCCCCCEECCCCCEECCCCCCCCCH TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLE HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH RISAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSLRVIADHIRSCAFLIADGVMPS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRI CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREIGID HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC EEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFETPFTGYKQLSQKTSVVGIYKDGVEVN CCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHCCCCEEEEEECCCEEE GLIAGEEAVVVLAETPFYAESGGQVGDCGVLKVDDGIFAVTDTQKAGKAIIHKGYLELGT EEEECCCEEEEEECCCCEECCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHCCHHCCC LEKGALVEAVVDGERRQAVALNHSVTHLLHAALRQALGDHVTQKGSLVGAERMRFDFSHF CCCCHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EGLTMATIRRVEELVNAQIRANHDIATQVMDLEAAKSAGAMALFGEKYEDDVRVVRMGDY CCHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCC STELCGGTHAKRTGDIGFFKIIAESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALV CHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KGDQFSIADKVRQILDKSKMMERELEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCC DPKSLRGMLDELKNRMKSGVVLLATSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQVGG CHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC KGGGRPDMAQAGGTQPEAVPAALQSVHSWLEERL CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA